BAC Information

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BAC

Clone NameB6Ng01-192M20
Chromosome17 (Build37)1 (Build37)
Map Location 22,835,846 - 22,836,95024,936,960 - 24,937,051
singlet/doubletsingletsinglet
Overlap geneENSMUSG00000046088
Upstream geneZfp760, BC043476, 4930515G13Rik, 2610036F08Rik, LOC624960, 3110048L19Rik, 4930432O21Rik, LOC665820, LOC665825, LOC674332, LOC631010, EG665844, EG210853, LOC671007, EG240038, EG631624, 6330416L07Rik, Zfp758, 1300003B13Rik, EG210876, LOC100042656, EG628185
Downstream geneEG383218, EG433078, LOC100042679, A630033E08Rik, LOC671128, LOC665961, EG434701, LOC665976, LOC100042225, LOC100042234, EG665988, LOC100042248, Zfp40, LOC100042257, LOC100042261, Vmn2r-ps133, EG666002, EG638102, EG619697, EG619775, EG619788, Olfr752-ps1, EG666030, EG381070, Zfp213, Zfp13, Zscan10, LOC666062, Mmp25, LOC665757, BC038613, Thoc6, Hcfc1r1, Tnfrsf12a, Cldn6, Cldn9, EG666080
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-192M20.bB6Ng01-192M20.g
ACCGA015943GA015944
length1,091952
definitionB6Ng01-192M20.b B6Ng01-192M20.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(22,835,846 - 22,836,950)(24,936,960 - 24,937,051)
sequence
gaattccatcctcagtccagtccttagacactgttagaggaaacttcctt
ctttagtctcagcacttgcttgatgaacattttagttttataatgtagga
agttggttacttttgccaactgaaaaaagtttctttgatccagaatagag
gcagcaacatgctcctatgagtgtgaattgacccatttgaacatatagga
aatgtcagtagcggataccttccttatcattggcttttttccaagttcca
tgtataacctgtttgtttttggttttcccccagagaggttggtctcagat
tgaaccagaaagccttctcttacccacaaatcatcttgccactgtgaaac
cagtgagtatgccttgcctggctgattgtgattgtggattatgatccact
tttattaggaactcatctttttttttccaattctaatttattcatgtata
acattctctccacagcactgcatagtgtaaggctgatgtcattgtcaaac
attgcagtgtccccttttagctctacttctaatacatggaaagccactct
ttcagtataaagtaggtgaacaatgctttgtcagtactttttttttcaca
ttcatatatacaattatttattatatactcatatatacatatacttaaaa
ggaacatacaaaacaatgagtgttaattatataacctttaaggagctagt
ctctgtcttctctatcacaattggctatgatttttaaaaatcgaccttaa
attgctcttacacatctcttttaagtgatgaaaaattgaagtaacagaat
aaattagagttggaacaaaggatattagattagtaagaccaagaggtttc
cctaactcaactccttactttaaaatcccttgtaatttatccttgtaaaa
tatttgcttcttatttttttccattttttattaggtatttagctcattac
attttccaatgctataacccaagtcccccatatcacccactcccactccc
ttgccaccactccccccttttgccctgtgtccctgtactggggcataaag
gttgcaagtccaatggactctcatcaatgaatgccgactag
gaattcattctttttaatagctgagtagtactccattgtaagaatctctg
gtggaatcaccatgcctgacctaaagctgtactacagaacaattgtcata
aaaaaacttcatggtagtggtatagagacagtcaagtagaccaatggaat
agaattgaagacccagaaatgaacacacacacctatggccacttgatctt
tgacaaaggagctaaccatccagtggaaaaaagacagcattttcaacaat
tggtgctggcacaactggaagttatcatgtagaagaatgcgaattgatcc
attcctatcgccttgtactagggtcaaatctaagtggatcaaggagctcc
acataaaccacagacagttaagcttatagaggagaaagtgggaaaaagtc
ttgaagatatgggcacaagggaaaaattcctgaatagaacagcaatggct
tgtgctgtaaggtcaagaatcgacaaatgggacctcataaaattacaaag
cttctacaaggcaaaagacaccgtcaataagacaaaaaggccaccaacag
attgggaaaggatttttactaatcctaaatcagataggggactaatatcc
aatatatataaagaactcaagaaggtggactccagaaaatcaaataaccc
cattaaaaaatggggctcagagctgaacaaagaattctcaccttaggaat
accgaatggctgagaagcacctgaaaaaatgttcaacatccttaatcatc
agagaaatccaaatcaaaacaaccctgagattccacctcacaccatttca
gaatggctaagataaaaaattcatgtgacagcagatgctagcgaggatgt
ggagaaagagaaatactcctccactgttggtgggattgcaatcttgtaca
ccactctggaaatcagtctggtgtttcctcagaaaaattggacatagtac
tg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_22835846_22836950
seq2: B6Ng01-192M20.b_45_1135

seq1  GAATTCCATCCTCAGTCCAGTCCTTAGACACTGTTAGAGGAAACTTCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCCTCAGTCCAGTCCTTAGACACTGTTAGAGGAAACTTCCTT  50

seq1  CTTTAGTCTCAGCACTTGCTTGATGAACATTTTAGTTTTATAATGTAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGTCTCAGCACTTGCTTGATGAACATTTTAGTTTTATAATGTAGGA  100

seq1  AGTTGGTTACTTTTGCCAACTGAAAAAAGTTTCTTTGATCCAGAATAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGTTACTTTTGCCAACTGAAAAAAGTTTCTTTGATCCAGAATAGAG  150

seq1  GCAGCAACATGCTCCTATGAGTGTGAATTGACCCATTTGAACATATAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAACATGCTCCTATGAGTGTGAATTGACCCATTTGAACATATAGGA  200

seq1  AATGTCAGTAGCGGATACCTTCCTTATCATTGGCTTTTTTCCAAGTTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCAGTAGCGGATACCTTCCTTATCATTGGCTTTTTTCCAAGTTCCA  250

seq1  TGTATAACCTGTTTGTTTTTGGTTTTCCCCCAGAGAGGTTGGTCTCAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAACCTGTTTGTTTTTGGTTTTCCCCCAGAGAGGTTGGTCTCAGAT  300

seq1  TGAACCAGAAAGCCTTCTCTTACCCACAAATCATCTTGCCACTGTGAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCAGAAAGCCTTCTCTTACCCACAAATCATCTTGCCACTGTGAAAC  350

seq1  CAGTGAGTATGCCTTGCCTGGCTGATTGTGATTGTGGATTATGATCCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAGTATGCCTTGCCTGGCTGATTGTGATTGTGGATTATGATCCACT  400

seq1  TTTATTAGGAACTCATCTTTTTTTTTCCAATTCTAATTTATTCATGTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTAGGAACTCATCTTTTTTTTTCCAATTCTAATTTATTCATGTATA  450

seq1  ACATTCTCTCCACAGCACTGCATAGTGTAAGGCTGATGTCATTGTCAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCTCTCCACAGCACTGCATAGTGTAAGGCTGATGTCATTGTCAAAC  500

seq1  ATTGCAGTGTCCCCTTTTAGCTCTACTTCTAATACATGGAAAGCCACTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAGTGTCCCCTTTTAGCTCTACTTCTAATACATGGAAAGCCACTCT  550

seq1  TTCAGTATAAAGTAGGTGAACAATGCTTTGTCAGTACTTTTTTTTTCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTATAAAGTAGGTGAACAATGCTTTGTCAGTACTTTTTTTTTCACA  600

seq1  TTCATATATACAATTATTTATTATATACTCATATATACATATACTTAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATATACAATTATTTATTATATACTCATATATACATATACTTAAAA  650

seq1  GGAACATACAAAACAATGAGTGTTAATTATATAACCTTTAAGGAGCTAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACATACAAAACAATGAGTGTTAATTATATAACCTTTAAGGAGCTAGT  700

seq1  CTCTGTCTTCTCTATCACAATTGGCTATGATTTTTAAAAATCGACCTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCTTCTCTATCACAATTGGCTATGATTTTTAAAAATCGACCTTAA  750

seq1  ATTGCTCTTACACATCTCTTTTAAGTGATGAAAAATTGAAGTAACAGAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTCTTACACATCTCTTTTAAGTGATGAAAAATTGAAGTAACAGAAT  800

seq1  AAATTAGAGTTGGAACAAAGGATATTAGATTAGTAAGACCAAGAGGTTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGAGTTGGAACAAAGGATATTAGATTAGTAAGACCAAGAGGTTTC  850

seq1  CCTAACTCAACTCCTTACTTTAAAATCCCTTGTAATTTATCCTTGTAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACTCAACTCCTTACTTTAAAATCCCTTGTAATTTATCCTTGTAAAA  900

seq1  TATTTGCTTCTTATTTTTTTTCCATTTTTTATTAGGTATTTAGCTCATTT  950
      ||||||||||||| ||||||||||||||||||||||||||||||||| ||
seq2  TATTTGCTTCTTA-TTTTTTTCCATTTTTTATTAGGTATTTAGCTCA-TT  948

seq1  ACA-TTTCCAATGCTATACCCAAAGTCCCCCATATCCACCCACCCCCACT  999
      ||| |||||||||||||| || ||||||||||||| ||||||| ||||||
seq2  ACATTTTCCAATGCTATAACCCAAGTCCCCCATAT-CACCCACTCCCACT  997

seq1  CCCCTGCCCACCCACTCCCCCCTTTTTGGCCCTGGTGTTCCCCTGTACTG  1049
      ||| ||||   |||||||||||||||  ||||| ||||  ||||||||||
seq2  CCCTTGCC--ACCACTCCCCCCTTTT--GCCCT-GTGT--CCCTGTACTG  1040

seq1  GGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAATGATGGCC  1099
      ||||  |||||| ||||||||||||| || ||||| |  ||||||  |||
seq2  GGGC--ATAAAGGTTGCAAGTCCAAT-GGACTCTCAT--CAATGAATGCC  1085

seq1  GACTAG  1105
      ||||||
seq2  GACTAG  1091

seq1: chr1_24936960_24937051
seq2: B6Ng01-192M20.g_791_883

seq1  AAATGTTCAACATCCTTAGTCATTAGGGAAATGCAAATCAAAACAACCCT  50
      |||||||||||||||||| |||| || ||||| |||||||||||||||||
seq2  AAATGTTCAACATCCTTAATCATCAGAGAAATCCAAATCAAAACAACCCT  50

seq1  GAGATACCACCTCACACCA-GTCAGAATGGCTAAGATAAAAAA  92
      ||||| |||||||||||||  ||||||||||||||||||||||
seq2  GAGATTCCACCTCACACCATTTCAGAATGGCTAAGATAAAAAA  93