BAC Information

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BAC

Clone NameB6Ng01-192N06
Chromosome1 (Build37)
Map Location 101,974,182 - 102,119,147
singlet/doubletdoublet
Overlap geneC230078M14Rik
Upstream geneLOC633295
Downstream geneEG666200
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-192N06.bB6Ng01-192N06.g
ACCGA015963GA015964
length1,0221,147
definitionB6Ng01-192N06.b B6Ng01-192N06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,974,182 - 101,975,205)(102,117,995 - 102,119,147)
sequence
gaattctaccagaccttccaagaagacctaataatgatactcttcaaaca
attgaacaaaatagaaacagaaggaacactacccaattcattcaatgaag
ccacaattatgctgataacaaaaccacacaaagacccaacaacaaaagag
aacttcagaccattttcccttatgaatattgatgcaaaaatactcaataa
aattctcgcaaaccgaatccaaaaacacatcaaaacgatcatccatcatg
atcaagtaggcttcaaacattaacaatagcatcaatttgacacacagaca
gttctatttgtaaatacttggtgtgtgtgtgtgtgtgtctgtgtgtgtgt
ctctgtgtgtgtctgtgtctgtgtcttctgtgtctgtgtctgtgtctctg
tttgtgtctctgtctatgtgaaatcaaagttcaggacagtgagtggcaac
atataagaagaagctagataatgtagaagaggctcaatggttaagtgcac
atattccttatacagaggaattgggtgtagttccaagcttacatatggtg
tcactcacaactgtcattgtctccttctccatgagacctgactcctgcct
cttgcttcttgggatactagcactcacatgtacatatcacactttcacaa
atacacataactattaaaaaatttaaataaaaatgataaattaaatctaa
ctgatgaagaatagataaaccttttgtaaggaacttaaattatgttgaat
aatgaacatataattactatttgcaggacagctgacaatattaaatattt
gtttcaagggccaggccaattacaactactaaaaatatattgagtagaac
tcacttaggctcatctggactaaatcagaaatctgggaaagggatctgat
ctatgcccagaaatccttcaagcgacttctgataccactccctcacacac
tggctgaggcctcgacttgggatctctctctatatatatatttctctctc
tccaattgctctctctcatttc

gaattcaattgttagcagaaagaaaatactcatttcctcttccagccata
atgacagaggtatcactgagtcaggagcaagggaataattgccagggtct
caatcattgcattagatgccagcaggaaatcttcactgctgcaaactgac
tttgacagccactcaactgacagtataataaactcagtttcatgtcctgc
tacagcaatggatactgttctttcttttttatgttgtctgcacatattta
gttttttacatgtcctatttatactaggtctcttaaaattggattcacct
acagctatatcaactgaaggatggtttacaaggccctttgagaattcatg
ggacttaatgtcaaaagatttaagaaatattcattgaaagaaaagctaga
gcctcagtcctttcactacttaaaagtgagaaatttctccataagtgatg
atggaaagaaaaacatgggttatgtgatattgtctttagttccatcaggg
tagagctttcagaaagaaatgccaacaagaaagtttaccactctactttc
tcagtatttttgtttttgttttttccacaaacagatttctaaacctagta
ctagttttaggaaacacaattaaagccaatgcttctgacgccaaagacca
agaaaaagacgaagaatttacttatggcaaccaggtgtacatgtagtcta
agagaagaatgttgaattaaataacaaattacctgaaaaacacaaagtta
gatctggcaggaagtggccaagttgaaataaagccaacagacaggaagag
ggagaagttcttactatgaacaagtgaagacaagtggctcagagctgctc
taaagaagatcacagaagtcaagggcttgaattctctactcccagaaact
gaccacagagcttatatgtgttaaggatagggaagaaggaataggaagct
gagttatttgggtgaagcataatggtctgattttggtgcccagagcccaa
cacaacaaaaaagtgtgcctggttgttgcccttggaaagttcctagtatg
ggtggcagacatggtggagcactaggttctgcagtagcaatgtattgaca
ttttctgtccaagagattcggaagagattctaaggtatggaccttag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_101974182_101975205
seq2: B6Ng01-192N06.b_41_1062

seq1  GAATTCTACCAGACCTTCCAAGAAGACCTAATAATGATACTCTTCAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACCAGACCTTCCAAGAAGACCTAATAATGATACTCTTCAAACA  50

seq1  ATTGAACAAAATAGAAACAGAAGGAACACTACCCAATTCATTCAATGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAACAAAATAGAAACAGAAGGAACACTACCCAATTCATTCAATGAAG  100

seq1  CCACAATTATGCTGATAACAAAACCACACAAAGACCCAACAACAAAAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAATTATGCTGATAACAAAACCACACAAAGACCCAACAACAAAAGAG  150

seq1  AACTTCAGACCATTTTCCCTTATGAATATTGATGCAAAAATACTCAATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCAGACCATTTTCCCTTATGAATATTGATGCAAAAATACTCAATAA  200

seq1  AATTCTCGCAAACCGAATCCAAAAACACATCAAAACGATCATCCATCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTCGCAAACCGAATCCAAAAACACATCAAAACGATCATCCATCATG  250

seq1  ATCAAGTAGGCTTCAAACATTAACAATAGCATCAATTTGACACACAGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGTAGGCTTCAAACATTAACAATAGCATCAATTTGACACACAGACA  300

seq1  GTTCTATTTGTAAATACTTGGTGTGTGTGTGTGTGTGTCTGTGTGTGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTATTTGTAAATACTTGGTGTGTGTGTGTGTGTGTCTGTGTGTGTGT  350

seq1  CTCTGTGTGTGTCTGTGTCTGTGTCTTCTGTGTCTGTGTCTGTGTCTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGTGTGTCTGTGTCTGTGTCTTCTGTGTCTGTGTCTGTGTCTCTG  400

seq1  TTTGTGTCTCTGTCTATGTGAAATCAAAGTTCAGGACAGTGAGTGGCAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTCTCTGTCTATGTGAAATCAAAGTTCAGGACAGTGAGTGGCAAC  450

seq1  ATATAAGAAGAAGCTAGATAATGTAGAAGAGGCTCAATGGTTAAGTGCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAGAAGAAGCTAGATAATGTAGAAGAGGCTCAATGGTTAAGTGCAC  500

seq1  ATATTCCTTATACAGAGGAATTGGGTGTAGTTCCAAGCTTACATATGGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCCTTATACAGAGGAATTGGGTGTAGTTCCAAGCTTACATATGGTG  550

seq1  TCACTCACAACTGTCATTGTCTCCTTCTCCATGAGACCTGACTCCTGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCACAACTGTCATTGTCTCCTTCTCCATGAGACCTGACTCCTGCCT  600

seq1  CTTGCTTCTTGGGATACTAGCACTCACATGTACATATCACACTTTCACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTCTTGGGATACTAGCACTCACATGTACATATCACACTTTCACAA  650

seq1  ATACACATAACTATTAAAAAATTTAAATAAAAATGATAAATTAAATCTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACATAACTATTAAAAAATTTAAATAAAAATGATAAATTAAATCTAA  700

seq1  CTGATGAAGAATAGATAAACCTTTTGTAAGGAACTTAAATTATGTTGAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGAAGAATAGATAAACCTTTTGTAAGGAACTTAAATTATGTTGAAT  750

seq1  AATGAACATATAATTACTATTTGCAGGACAGCTGACAATATTAAATATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAACATATAATTACTATTTGCAGGACAGCTGACAATATTAAATATTT  800

seq1  GTTTCAAGGGCCAGGCCAATTACAACTACTAAAAATATATTGAGTAGAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAAGGGCCAGGCCAATTACAACTACTAAAAATATATTGAGTAGAAC  850

seq1  TCACTTAGGCTTCATCTGGACTAAATCAGAAATCTGGGAAAGGGATCTGA  900
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TCACTTAGGC-TCATCTGGACTAAATCAGAAATCTGGGAAAGGGATCTGA  899

seq1  TCTATGCCCAGAAATCCTTCAGGCGACTTCTGATACCACTCCCTCACACA  950
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TCTATGCCCAGAAATCCTTCAAGCGACTTCTGATACCACTCCCTCACACA  949

seq1  CTGGCTGAAGGCCTCGACCTTGGATCTCTCTCTATATATATATTTCTCTC  1000
      ||||||| |||||||||| | |||||||||||||||||||||||||||||
seq2  CTGGCTG-AGGCCTCGACTTGGGATCTCTCTCTATATATATATTTCTCTC  998

seq1  TCTCC-ATTTCTCTCTCTCTATTTC  1024
      ||||| ||| ||||||||| |||||
seq2  TCTCCAATTGCTCTCTCTC-ATTTC  1022


seq1: chr1_102117995_102119147
seq2: B6Ng01-192N06.g_63_1209 (reverse)

seq1  CTAAGGTCCCATTACTTAGAATCTCT--CGATCTTCTTTGTGACAGAAAA  48
      ||||||| ||||  ||||||||||||  |||   ||| |  |||||||||
seq2  CTAAGGT-CCATACCTTAGAATCTCTTCCGA--ATCTCTTGGACAGAAAA  47

seq1  TGGTCAATACATTGGTTTAACTGGGCAGGAACTTTAAGTGCTCCA-CATG  97
      | |||||||||||| |   |||  |||| | ||   ||||||||| ||||
seq2  T-GTCAATACATTGCT---ACT--GCAGAACCT---AGTGCTCCACCATG  88

seq1  TCTTGCTTCCCAATTACTAGG-ACTTT-CAAGGGCAACAACCAGGCACAC  145
      || |||  ||||  ||||||| ||||| ||||||||||||||||||||||
seq2  TC-TGCCACCCA--TACTAGGAACTTTCCAAGGGCAACAACCAGGCACAC  135

seq1  CTTTTTG-TGTG-TGGGCTCTGGGCACCAAAATCAGACCATTATGCTTCA  193
       |||||| |||| |||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGTTGTGTTGGGCTCTGGGCACCAAAATCAGACCATTATGCTTCA  185

seq1  -CCAAATAACTCAGCTTCCTATTCCTTCTTCCTTAT-CTTAACACATATA  241
       ||||||||||||||||||||||||||||||| ||| |||||||||||||
seq2  CCCAAATAACTCAGCTTCCTATTCCTTCTTCCCTATCCTTAACACATATA  235

seq1  AGCTCTGTGGTCAGTTTCTGGGAGTAGAGAATTTCAAGCCC-TGACTTCT  290
      ||||||||||||||||||||||||||||||| ||||||||| ||||||||
seq2  AGCTCTGTGGTCAGTTTCTGGGAGTAGAGAA-TTCAAGCCCTTGACTTCT  284

seq1  GTGATCTTCTTTAGAGCAGCTCTGAGCCACTTGTCTTCACTTGTTCATAG  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCTTCTTTAGAGCAGCTCTGAGCCACTTGTCTTCACTTGTTCATAG  334

seq1  TAAGAACTTCTCCCTCTTCCTGTCTGTTGGCTTTATTTCAACTTGGCCAC  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAACTTCTCCCTCTTCCTGTCTGTTGGCTTTATTTCAACTTGGCCAC  384

seq1  TTCCTGCCAGATCTAACTTTGTGTTTTTCAGGTAATTTGTTATTTAATTC  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGCCAGATCTAACTTTGTGTTTTTCAGGTAATTTGTTATTTAATTC  434

seq1  AACATTCTTCTCTTAGACTACATGTACACCTGGTTGCCATAAGTAAATTC  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTCTTCTCTTAGACTACATGTACACCTGGTTGCCATAAGTAAATTC  484

seq1  TTCGTCTTTTTCTTGGTCTTTGGCGTCAGAAGCATTGGCTTTAATTGTGT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTCTTTTTCTTGGTCTTTGGCGTCAGAAGCATTGGCTTTAATTGTGT  534

seq1  TTCCTAAAACTAGTACTAGGTTTAGAAATCTGTTTGTGGAAAAAACAAAA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAAAACTAGTACTAGGTTTAGAAATCTGTTTGTGGAAAAAACAAAA  584

seq1  ACAAAAATACTGAGAAAGTAGAGTGGTAAACTTTCTTGTTGGCATTTCTT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAATACTGAGAAAGTAGAGTGGTAAACTTTCTTGTTGGCATTTCTT  634

seq1  TCTGAAAGCTCTACCCTGATGGAACTAAAGACAATATCACATAACCCATG  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAAGCTCTACCCTGATGGAACTAAAGACAATATCACATAACCCATG  684

seq1  TTTTTCTTTCCATCATCACTTATGGAGAAATTTCTCACTTTTAAGTAGTG  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTTCCATCATCACTTATGGAGAAATTTCTCACTTTTAAGTAGTG  734

seq1  AAAGGACTGAGGCTCTAGCTTTTCTTTCAATGAATATTTCTTAAATCTTT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGACTGAGGCTCTAGCTTTTCTTTCAATGAATATTTCTTAAATCTTT  784

seq1  TGACATTAAGTCCCATGAATTCTCAAAGGGCCTTGTAAACCATCCTTCAG  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATTAAGTCCCATGAATTCTCAAAGGGCCTTGTAAACCATCCTTCAG  834

seq1  TTGATATAGCTGTAGGTGAATCCAATTTTAAGAGACCTAGTATAAATAGG  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATATAGCTGTAGGTGAATCCAATTTTAAGAGACCTAGTATAAATAGG  884

seq1  ACATGTAAAAAACTAAATATGTGCAGACAACATAAAAAAGAAAGAACAGT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTAAAAAACTAAATATGTGCAGACAACATAAAAAAGAAAGAACAGT  934

seq1  ATCCATTGCTGTAGCAGGACATGAAACTGAGTTTATTATACTGTCAGTTG  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATTGCTGTAGCAGGACATGAAACTGAGTTTATTATACTGTCAGTTG  984

seq1  AGTGGCTGTCAAAGTCAGTTTGCAGCAGTGAAGATTTCCTGCTGGCATCT  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCTGTCAAAGTCAGTTTGCAGCAGTGAAGATTTCCTGCTGGCATCT  1034

seq1  AATGCAATGATTGAGACCCTGGCAATTATTCCCTTGCTCCTGACTCAGTG  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAATGATTGAGACCCTGGCAATTATTCCCTTGCTCCTGACTCAGTG  1084

seq1  ATACCTCTGTCATTATGGCTGGAAGAGGAAATGAGTATTTTCTTTCTGCT  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTCTGTCATTATGGCTGGAAGAGGAAATGAGTATTTTCTTTCTGCT  1134

seq1  AACAATTGAATTC  1153
      |||||||||||||
seq2  AACAATTGAATTC  1147


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