BAC Information

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BAC

Clone NameB6Ng01-193A07
Chromosome1 (Build37)
Map Location 164,224,011 - 164,378,554
singlet/doubletdoublet
Overlap geneDnm3
Upstream geneTnfsf4, Tnfsf18, EG435650, LOC100039623, LOC269134, Fasl, AI848100, EG665109, Pigc, LOC100039703, Dnm3os
Downstream gene5630401D24Rik, Vamp4, LOC435651, Myoc, Bat2d, Fmo4, Fmo1, Fmo2, Fmo6, Fmo3, 4921528O07Rik, Prrx1, LOC100039597, Scyl1bp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-193A07.bB6Ng01-193A07.g
ACCGA016105GA016106
length1,093619
definitionB6Ng01-193A07.b B6Ng01-193A07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(164,224,011 - 164,225,107)(164,377,938 - 164,378,554)
sequence
gaattctgcactgatagactgtgacctggaactgcaagccaaaagaagtc
ctttctcccccaaggggcttttcaactggctgattttatcagagcaaagg
aaatgaaactggaacaggctctcatgtagcccagcctggccttgaactgg
ctgcataacagagaatgaacttgaatttctaattctcctgcctctactcc
ctaagtgctgcaatttcaggcatgtgcattagattttatagaactaggtt
ttattggcccattacatgggaagagggaacctttagcttgggactatatg
tctggtccctggcttcgtttcactggctcatgagttaatgctggctaagt
tacaataactctattctctgctttgggctgctatccaagattgtaaaagc
tggaaaacaagtggaaattataaatagcgggcagttaatattcaaagcac
actgataaaaagtagtcacaatgatccctgagcttaagcaggaaaatggt
ttccaccagggtcccttgcaaatgtcacagcctgccatgcttctgacact
gtcccctcacttccatcaccacccacacatctgcactgactctatgggag
cgtgtgtgtctctctcctgtggtttctactctctcgatatatttttttcc
tctgcttttttttttcttcttcctctacccatctgaccatcacaaaattc
ttggaacactgacttactgaggcactcagagaccatatagaatggcatcc
cagttctgcccaggggggggggggacacaaacaacagttctaagaggtgg
ttttcacaagaacatgctgttatttgggagagaacacatggcctaagtcc
agtgttccctccacacgatgcttgcagctgtgtcgcggaagagcatttga
aagtcagtatttcccactatcgtgtttgaatagtaactaagaataaaagc
catttttgacataagaatttggttatcttttctcaagtaagtatcctccc
taaaaataatctttcaagtcagagaactaggtttcaagatgctttcaagg
cacaagattgcctctgacgttaaagattcattctcaatatttt
gaattcagactcccaaaccgtgaattgcctcattcatatctgcagggttc
agactgcacttgagttttaggtggggtgtctgactataaacagactagag
gggagggtgggtgttctgcgaacgtactgaccactgctgtcttaattact
cactgagagtttccggcactcagcgcaaggatgttcaggccagccctcgt
gacagatcatactgcctctggttggctcatatggttgggagagaatatgg
atgataaagtgacattttcatcttcgaacatggcatggaggagaatgggg
aagtgatcactaacgataagatgctcaacaagctcccaaagcaaggacca
gtgaccctcggtgaagcttgcatgacattcttttcaatacaaacggaaag
acaatagtgagctgttttctcctttcaatcatattccttaggaacaacag
cctcatttcctattttgtatttctccatggtaaataatgaaggcatctcc
acaaatggaataatccagaaagattaattttaaaaatctttaattaataa
attaatttattttttttgggctggggacaaactcaatcagttgaaaaact
ttcttacatcttggttaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_164224011_164225107
seq2: B6Ng01-193A07.b_48_1140

seq1  GAATTCTGCACTGATAGACTGTGACCTGGAACTGCAAGCCAAAAGAAGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCACTGATAGACTGTGACCTGGAACTGCAAGCCAAAAGAAGTC  50

seq1  CTTTCTCCCCCAAGGGGCTTTTCAACTGGCTGATTTTATCAGAGCAAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCCCCCAAGGGGCTTTTCAACTGGCTGATTTTATCAGAGCAAAGG  100

seq1  AAATGAAACTGGAACAGGCTCTCATGTAGCCCAGCCTGGCCTTGAACTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAACTGGAACAGGCTCTCATGTAGCCCAGCCTGGCCTTGAACTGG  150

seq1  CTGCATAACAGAGAATGAACTTGAATTTCTAATTCTCCTGCCTCTACTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATAACAGAGAATGAACTTGAATTTCTAATTCTCCTGCCTCTACTCC  200

seq1  CTAAGTGCTGCAATTTCAGGCATGTGCATTAGATTTTATAGAACTAGGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTGCTGCAATTTCAGGCATGTGCATTAGATTTTATAGAACTAGGTT  250

seq1  TTATTGGCCCATTACATGGGAAGAGGGAACCTTTAGCTTGGGACTATATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGGCCCATTACATGGGAAGAGGGAACCTTTAGCTTGGGACTATATG  300

seq1  TCTGGTCCCTGGCTTCGTTTCACTGGCTCATGAGTTAATGCTGGCTAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTCCCTGGCTTCGTTTCACTGGCTCATGAGTTAATGCTGGCTAAGT  350

seq1  TACAATAACTCTATTCTCTGCTTTGGGCTGCTATCCAAGATTGTAAAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATAACTCTATTCTCTGCTTTGGGCTGCTATCCAAGATTGTAAAAGC  400

seq1  TGGAAAACAAGTGGAAATTATAAATAGCGGGCAGTTAATATTCAAAGCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAACAAGTGGAAATTATAAATAGCGGGCAGTTAATATTCAAAGCAC  450

seq1  ACTGATAAAAAGTAGTCACAATGATCCCTGAGCTTAAGCAGGAAAATGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATAAAAAGTAGTCACAATGATCCCTGAGCTTAAGCAGGAAAATGGT  500

seq1  TTCCACCAGGGTCCCTTGCAAATGTCACAGCCTGCCATGCTTCTGACACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACCAGGGTCCCTTGCAAATGTCACAGCCTGCCATGCTTCTGACACT  550

seq1  GTCCCCTCACTTCCATCACCACCCACACATCTGCACTGACTCTATGGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCTCACTTCCATCACCACCCACACATCTGCACTGACTCTATGGGAG  600

seq1  CGTGTGTGTCTCTCTCCTGTGGTTTCTACTCTCTCGATATATTTTTTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTGTGTCTCTCTCCTGTGGTTTCTACTCTCTCGATATATTTTTTTCC  650

seq1  TCTGCTTTTTTTTTTCTTCTTCCTCTACCCATCTGACCATCACAAAATTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTTTTTTTTTCTTCTTCCTCTACCCATCTGACCATCACAAAATTC  700

seq1  TTGGAACACTGACTTACTGAGGCACTCAGAGACCATATAGAATGGCATCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAACACTGACTTACTGAGGCACTCAGAGACCATATAGAATGGCATCC  750

seq1  CAGTTCTGCCCAGGGGGGGGGGGGACACAAACAACAGTTCTAAGAGGTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCTGCCCAGGGGGGGGGGGGACACAAACAACAGTTCTAAGAGGTGG  800

seq1  TTTTCACAAGAACATGCTGTTATTTGGGAGAGAACACATGGCCTAAGTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACAAGAACATGCTGTTATTTGGGAGAGAACACATGGCCTAAGTCC  850

seq1  AGTGTTCCCTCCACACGATGCTTGCAGCTGTGTCGCGGAAGAGCATTTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTCCCTCCACACGATGCTTGCAGCTGTGTCGCGGAAGAGCATTTGA  900

seq1  AAGTCAGTATTTCCCACTATCGTG-TTGATAAGTAACTAAGAAT-AAAGC  948
      |||||||||||||||||||||||| ||||  ||||||||||||| |||||
seq2  AAGTCAGTATTTCCCACTATCGTGTTTGAATAGTAACTAAGAATAAAAGC  950

seq1  CA-TTTTGACATAAGAATTTGTTATTCTTTTCTCAAGTAAGTATCCTCCC  997
      || |||||||||||||||||| |  |||||||||||||||||||||||||
seq2  CATTTTTGACATAAGAATTTGGTTATCTTTTCTCAAGTAAGTATCCTCCC  1000

seq1  TTAAAAATAATCTTTCCAAGTCAGAGAACTAGGGTTCAAAGATGCTTTCA  1047
       |||||||||||||| ||||||||||||||||| ||| ||||||||||||
seq2  -TAAAAATAATCTTT-CAAGTCAGAGAACTAGGTTTC-AAGATGCTTTCA  1047

seq1  AGGCCACAAGA-TGGCTCTGAACGTTTAAAAGATTCATTCCTCAATATTT  1096
      ||| ||||||| || ||||| |||||  ||||||||||| ||||||||||
seq2  AGG-CACAAGATTGCCTCTG-ACGTT--AAAGATTCATT-CTCAATATTT  1092

seq1  T  1097
      |
seq2  T  1093

seq1: chr1_164377938_164378554
seq2: B6Ng01-193A07.g_62_680 (reverse)

seq1  TCTAACCAAGATGTAAGAAAGTTTCTCAACTGATTGAGTTTGTCCCCAGC  50
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TCTAACCAAGATGTAAGAAAGTTTTTCAACTGATTGAGTTTGTCCCCAGC  50

seq1  CC-AAAAAAATAAATTAATTTATTAATTAAAGATTTTT-AAATTAATCTT  98
      || ||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CCAAAAAAAATAAATTAATTTATTAATTAAAGATTTTTAAAATTAATCTT  100

seq1  TCTGGATTATTCCATTTGTGGAGATGCCTTCATTATTTACCATGGAGAAA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGATTATTCCATTTGTGGAGATGCCTTCATTATTTACCATGGAGAAA  150

seq1  TACAAAATAGGAAATGAGGCTGTTGTTCCTAAGGAATATGATTGAAAGGA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAATAGGAAATGAGGCTGTTGTTCCTAAGGAATATGATTGAAAGGA  200

seq1  GAAAACAGCTCACTATTGTCTTTCCGTTTGTATTGAAAAGAATGTCATGC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACAGCTCACTATTGTCTTTCCGTTTGTATTGAAAAGAATGTCATGC  250

seq1  AAGCTTCACCGAGGGTCACTGGTCCTTGCTTTGGGAGCTTGTTGAGCATC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTCACCGAGGGTCACTGGTCCTTGCTTTGGGAGCTTGTTGAGCATC  300

seq1  TTATCGTTAGTGATCACTTCCCCATTCTCCTCCATGCCATGTTCGAAGAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCGTTAGTGATCACTTCCCCATTCTCCTCCATGCCATGTTCGAAGAT  350

seq1  GAAAATGTCACTTTATCATCCATATTCTCTCCCAACCATATGAGCCAACC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGTCACTTTATCATCCATATTCTCTCCCAACCATATGAGCCAACC  400

seq1  AGAGGCAGTATGATCTGTCACGAGGGCTGGCCTGAACATCCTTGCGCTGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAGTATGATCTGTCACGAGGGCTGGCCTGAACATCCTTGCGCTGA  450

seq1  GTGCCGGAAACTCTCAGTGAGTAATTAAGACAGCAGTGGTCAGTACGTTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCGGAAACTCTCAGTGAGTAATTAAGACAGCAGTGGTCAGTACGTTC  500

seq1  GCAGAACACCCACCCTCCCCTCTAGTCTGTTTATAGTCAGACACCCCACC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAACACCCACCCTCCCCTCTAGTCTGTTTATAGTCAGACACCCCACC  550

seq1  TAAAACTCAAGTGCAGTCTGAACCCTGCAGATATGAATGAGGCAATTCAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTCAAGTGCAGTCTGAACCCTGCAGATATGAATGAGGCAATTCAC  600

seq1  GGTTTGGGAGTCTGAATTC  617
      |||||||||||||||||||
seq2  GGTTTGGGAGTCTGAATTC  619