BAC Information

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BAC

Clone NameB6Ng01-193G04
Chromosome1 (Build37)
Map Location 155,056,010 - 155,213,228
singlet/doubletdoublet
Overlap geneLamc1, EG667795, EG626058
Upstream gene5730449L18Rik, Glt25d2, Rgl1, EG639787, Apobec4, Arpc5, Ncf2, Smg7, EG668097, Nmnat2, Lamc2
Downstream gene1700012A16Rik, Dhx9, Npl, LOC626096, Rgs8, Rgs16, Rnasel, LOC100043347, Rgsl1, 5830403L16Rik, EG433365, Teddm1, LOC100043357, Glul, LOC100043359
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-193G04.bB6Ng01-193G04.g
ACCGA016372GA016373
length897988
definitionB6Ng01-193G04.b B6Ng01-193G04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(155,212,325 - 155,213,228)(155,056,010 - 155,056,976)
sequence
gaattctataagccttggggatggatggttcagagcaggaagattttcag
agtagcactggatcctgtcagttattctcaaagacacatggaagaaaggt
acagaatatcagaaacacacaaacacacacattaataataataataataa
agtaataaatcaatcctgctgatggtgtcacttgctcacgggcaagagca
gacaaagactacaggacattgaaacaggaaacacttcctgagtgaatatg
ggtaatggcctattgtggagcccaacactcatgatggacaacggccagag
ggaccaactctttcctacttctaatgatgcttaatgatttctattcattc
ttcccttggtcattgtcaaaggtcttttttatctcattggtgttttcttt
ctttctttcttcttctttttttttttttttttttttttttttaggttttt
ccaaacaggatttttctgtgtagccctggctgtcctggaactcactctgt
agaccaggctggccttgaactcagaaatctgcctgcctctgcctcccaag
tgctgggatcaaagcagtgcgttaccaccgcccaggttcattggtgtttt
caatcagacaattttttttcataactaagtttttttttctttttttaagt
gaggtatggtggcacaaacttcttgggaccagtatgatagagaggagctt
gtgtgctgccctgatgatctgaattcataccaggatctcacaaagtatca
gagagaaacactccagagagttgtcctctgacttctacatttgtattttg
acacatgtgtctttgtttgtagcaccaacacaacacacgcacacacacac
acactttaaaaaaaagaacctagggtaaataataaatatgtttgtgt
gaattcacctcccgctgctaattttaataataagcagggctgcaggcttt
tcctggcaaagaacaaccataaccatggctacaccaatatgccacccaca
gtttggtaagtgctttttgtcgcagccttgcaaggtctctgtgagcactt
ctttagagtctcaaatgagtagtaaaaacttccaatctcccagccttgcc
ctgttaccatcggcctcgtgagacgacagcaccgtacagtgaggggagca
acagatgatcaacacctggaggatggagagagcaggggagtggaggctgc
tgggagtagacgccttgggagtagacgatgccatgaggtgaactgaacaa
ggagcagggctgcaaggactggtcgctgtgagcgcaggctcccgtccacc
ttcagtcttcagaaaggaaggagtcggaggaaaccctggctgactttctc
agctgcacttaacacaacccctgtccagtatttttgtacctggatcagtg
ttccccagcccagtctctagaccagtggttctcagccttcctaatgctgt
gaccctaaagggttcctcatgttgtcatgactcccccatccataaaatta
gtttcattgccactttgtaactgtaatctttgctactgttataaattgta
acgtaaatatttgtgttttcttgattgtcttaggtgactactatgaaaag
gtcatttgacatcccccaccaatgaagcctcaacccaatggttgagaacc
actgctgtaggatcagttacagctaacaacactcctttttcatacagata
caatctgtcctttaacaggcaatcatataaattagtatctgaagcatttg
ctttaacagatattctgtattgtatgtgttacattataccacattacaca
tcaccttacccacattacatatccctcctttgattaccatacccccacca
tacatacatgcccacataactacacacattacatatac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_155212325_155213228
seq2: B6Ng01-193G04.b_44_940 (reverse)

seq1  ACACAAACACTATTTATTATATACCCTAGGTTCTTTTTTTTTAAGTGTGT  50
      ||||||||| |||||||||| |||||||||||||||||||| ||||||||
seq2  ACACAAACA-TATTTATTATTTACCCTAGGTTCTTTTTTTTAAAGTGTGT  49

seq1  GTGTGTGTGCGTGTGTTTGTGTTTGGTGCTTACAAACAAAGACACATGTG  100
      ||||||||||||||| ||||| ||||||| ||||||||||||||||||||
seq2  GTGTGTGTGCGTGTG-TTGTG-TTGGTGC-TACAAACAAAGACACATGTG  96

seq1  TCAAAATACAAATGTAGAAGTCAGAGGACAACTCTCTGGAGTTGTTTCTC  150
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TCAAAATACAAATGTAGAAGTCAGAGGACAACTCTCTGGAG-TGTTTCTC  145

seq1  TCCTGATACTTTGTGAGATCCTGGTATTGAATTCAGATCATCAGGGCAGC  200
      | |||||||||||||||||||||||| |||||||||||||||||||||||
seq2  T-CTGATACTTTGTGAGATCCTGGTA-TGAATTCAGATCATCAGGGCAGC  193

seq1  ACACAAGCTCCTCTCTATCATACTGGTCCCAAGAAGTTTGTGCCACCATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAGCTCCTCTCTATCATACTGGTCCCAAGAAGTTTGTGCCACCATA  243

seq1  CCTCACTTAAAAAAAGAAAAAAAAACTTAGTTATGAAAAAAAATTGTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACTTAAAAAAAGAAAAAAAAACTTAGTTATGAAAAAAAATTGTCTG  293

seq1  ATTGAAAACACCAATGAACCTGGGCGGTGGTAACGCACTGCTTTGATCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAAACACCAATGAACCTGGGCGGTGGTAACGCACTGCTTTGATCCC  343

seq1  AGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCAAGGCCAGCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCAAGGCCAGCCTG  393

seq1  GTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAAAAATCCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAAAAATCCTGT  443

seq1  TTGGAAAAACCTAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAGAAGAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAAAACCTAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAGAAGAAAG  493

seq1  AAAGAAAGAAAACACCAATGAGATAAAAAAGACCTTTGACAATGACCAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGAAAACACCAATGAGATAAAAAAGACCTTTGACAATGACCAAG  543

seq1  GGAAGAATGAATAGAAATCATTAAGCATCATTAGAAGTAGGAAAGAGTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAATGAATAGAAATCATTAAGCATCATTAGAAGTAGGAAAGAGTTG  593

seq1  GTCCCTCTGGCCGTTGTCCATCATGAGTGTTGGGCTCCACAATAGGCCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTCTGGCCGTTGTCCATCATGAGTGTTGGGCTCCACAATAGGCCAT  643

seq1  TACCCATATTCACTCAGGAAGTGTTTCCTGTTTCAATGTCCTGTAGTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCATATTCACTCAGGAAGTGTTTCCTGTTTCAATGTCCTGTAGTCTT  693

seq1  TGTCTGCTCTTGCCCGTGAGCAAGTGACACCATCAGCAGGATTGATTTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGCTCTTGCCCGTGAGCAAGTGACACCATCAGCAGGATTGATTTAT  743

seq1  TACTTTATTATTATTATTATTAATGTGTGTGTTTGTGTGTTTCTGATATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTATTATTATTATTATTAATGTGTGTGTTTGTGTGTTTCTGATATT  793

seq1  CTGTACCTTTCTTCCATGTGTCTTTGAGAATAACTGACAGGATCCAGTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACCTTTCTTCCATGTGTCTTTGAGAATAACTGACAGGATCCAGTGC  843

seq1  TACTCTGAAAATCTTCCTGCTCTGAACCATCCATCCCCAAGGCTTATAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTGAAAATCTTCCTGCTCTGAACCATCCATCCCCAAGGCTTATAGA  893

seq1  ATTC  904
      ||||
seq2  ATTC  897

seq1: chr1_155056010_155056976
seq2: B6Ng01-193G04.g_67_1054

seq1  GAATTCACCTCCCGCTGCTAATTTTAATAATAAGCAGGGCTGCAGGCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTCCCGCTGCTAATTTTAATAATAAGCAGGGCTGCAGGCTTT  50

seq1  TCCTGGCAAAGAACAACCATAACCATGGCTACACCAATATGCCACCCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGCAAAGAACAACCATAACCATGGCTACACCAATATGCCACCCACA  100

seq1  GTTTGGTAAGTGCTTTTTGTCGCAGCCTTGCAAGGTCTCTGTGAGCACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGTAAGTGCTTTTTGTCGCAGCCTTGCAAGGTCTCTGTGAGCACTT  150

seq1  CTTTAGAGTCTCAAATGAGTAGTAAAAACTTCCAATCTCCCAGCCTTGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGAGTCTCAAATGAGTAGTAAAAACTTCCAATCTCCCAGCCTTGCC  200

seq1  CTGTTACCATCGGCCTCGTGAGACGACAGCACCGTACAGTGAGGGGAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTACCATCGGCCTCGTGAGACGACAGCACCGTACAGTGAGGGGAGCA  250

seq1  ACAGATGATCAACACCTGGAGGATGGAGAGAGCAGGGGAGTGGAGGCTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATGATCAACACCTGGAGGATGGAGAGAGCAGGGGAGTGGAGGCTGC  300

seq1  TGGGAGTAGACGCCTTGGGAGTAGACGATGCCATGAGGTGAACTGAACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGTAGACGCCTTGGGAGTAGACGATGCCATGAGGTGAACTGAACAA  350

seq1  GGAGCAGGGCTGCAAGGACTGGTCGCTGTGAGCGCAGGCTCCCGTCCACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAGGGCTGCAAGGACTGGTCGCTGTGAGCGCAGGCTCCCGTCCACC  400

seq1  TTCAGTCTTCAGAAAGGAAGGAGTCGGAGGAAACCCTGGCTGACTTTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTCTTCAGAAAGGAAGGAGTCGGAGGAAACCCTGGCTGACTTTCTC  450

seq1  AGCTGCACTTAACACAACCCCTGTCCAGTATTTTTGTACCTGGATCAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCACTTAACACAACCCCTGTCCAGTATTTTTGTACCTGGATCAGTG  500

seq1  TTCCCCAGCCCAGTCTCTAGACCAGTGGTTCTCAGCCTTCCTAATGCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCAGCCCAGTCTCTAGACCAGTGGTTCTCAGCCTTCCTAATGCTGT  550

seq1  GACCCTAAAGGGTTCCTCATGTTGTCATGACTCCCCCATCCATAAAATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTAAAGGGTTCCTCATGTTGTCATGACTCCCCCATCCATAAAATTA  600

seq1  GTTTCATTGCCACTTTGTAACTGTAATC-TTGCTACTGTTATAAATTGTA  649
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GTTTCATTGCCACTTTGTAACTGTAATCTTTGCTACTGTTATAAATTGTA  650

seq1  ACGTAAATATTTGTGTTTTC-TGATTGTCTTAGGTGACTACTATGAAAAG  698
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ACGTAAATATTTGTGTTTTCTTGATTGTCTTAGGTGACTACTATGAAAAG  700

seq1  GTCATTTGACATCCCCCACCAATGAAGCCTCAACCCAATGGTTGAGAACC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTTGACATCCCCCACCAATGAAGCCTCAACCCAATGGTTGAGAACC  750

seq1  ACTGCTGTAGGATCAGTTACAGCTAACAACACTCC-TTTTCATACAGATA  797
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ACTGCTGTAGGATCAGTTACAGCTAACAACACTCCTTTTTCATACAGATA  800

seq1  CAATCTGTCCTTT-ACAGGC-ATCATAT-AATTAGTATCTG-AGCATTTG  843
      ||||||||||||| |||||| ||||||| |||||||||||| ||||||||
seq2  CAATCTGTCCTTTAACAGGCAATCATATAAATTAGTATCTGAAGCATTTG  850

seq1  CTTT-ACAGATA-TCTGTA-TGTATGTG-TACA-TATA-CACA-TACACA  886
      |||| ||||||| |||||| |||||||| |||| |||| |||| ||||||
seq2  CTTTAACAGATATTCTGTATTGTATGTGTTACATTATACCACATTACACA  900

seq1  -CA-CATACACACA-TACATATACACACAT--ATATACATACACACA-CA  930
       || | ||| |||| ||||||| |   | |  ||   ||||| | || ||
seq2  TCACCTTACCCACATTACATATCCCTCCTTTGATTACCATACCCCCACCA  950

seq1  TACATACATGCACACATAACTACACACA-TACATATAC  967
      ||||||||||| |||||||||||||||| |||||||||
seq2  TACATACATGCCCACATAACTACACACATTACATATAC  988