BAC Information

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BAC

Clone NameB6Ng01-193M21
Chromosome1 (Build37)
Map Location 74,722,462 - 74,879,175
singlet/doubletdoublet
Overlap geneTtll4, Cyp27a1, Prkag3, Wnt6, Wnt10a, LOC100042901
Upstream geneTns1, Rufy4, Il8rb, Il8ra, Arpc2, Gpbar1, Aamp, Pnkd, Tmbim1, 2410125D13Rik, Gm216, Slc11a1, Ctdsp1, Vil1, Usp37, Rqcd1, Plcd4, Zfp142, Bcs1l, Rnf25, Stk36
Downstream geneCdk5r2, Fev, Cryba2, Ccdc108, Ihh, Nhej1, Slc23a3, 1810031K17Rik, BC038286, Zfand2b, Abcb6, Atg9a, D1Ertd161e, Stk16, Tuba4a, A630095N17Rik, Dnajb10, Ptprn, Resp18, Dnpep, Des, Speg, Gmppa, Accn4, D1Bwg1363e, A230078I05Rik, AW822216, Inha, Stk11ip, Slc4a3, LOC100039069, LOC383531
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-193M21.bB6Ng01-193M21.g
ACCGA016672GA016673
length1,1531,073
definitionB6Ng01-193M21.b B6Ng01-193M21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,878,033 - 74,879,175)(74,722,462 - 74,723,525)
sequence
gaattcttgtcacataccataaggagtcttggaactcaagcagcccaggt
tctaaaacttcaactctgctcaggaccaagttctttctatcctcaattct
ctttcttttctttcttctttccttcctttctcccctccttccttctttaa
tctgttgtgtttacatttatatatttggggcagtgcggctcagatagaag
taagagaacaagttttgaagagttggttccttccttccaccttgtttttg
aggcagattctcattatttctgctactgtgccacatacacaagctttgga
tcaactctcctgtctctgcctcctatctccccataggagctcatttaaaa
cagtctccatctcttgttttcttctttaataatttattttggaaaagcaa
aacaagacaaaacaaaacagagtatccaggcgaggctgccttcagactct
ctgtaattcaggatgactttgaatttcttacccttctgcttccagaatgc
tggtactggaggcatgtgccaccacgcccagtttgtttggtcttggggct
gaagcccaggtttctggacatgctaagcacgcgctcttgcctctgaactc
catccctgcccctggaaaccagtcccaacacagaactatgttagtccttg
gggttttttctaagctgaataatattccatttatgagagatagtgcaatg
taaagctggttctcatgacgaacacgtgctgtccagtgttcacgaggatg
aacaaggatgtgatgggtatttgcacataaggcactccataagtgcatga
ggctagagataaatttctggaagtaaaattgctgggttttaattatgtgc
aatatgttttctatagaggttgtatcaatttacagccccattcctcaagt
gtgcttcacacttctttgatacctttaaacagaacatagaaaaggtggtg
ggtgtttcccagggtttcttgcatcaggaagcaaaaaatgaagtcttggt
aggatggcttcagcggtttaaaagcagacaacattgttgcaaaggattca
tgtcaggcagctgttcaactgctggcaacttcagtttccaagggattgat
ggtccttttctgggtccctaatggccatgaccctcaatgcacaactctcc
aca
gaattcagcctttttagtatgttagcttttgaaactattcaaactgattt
ggaaataaattgatttcctcaaattattaggatttagactgcctcaaact
ttttaagtttggcatcacattcctttgggcactgggcattccatgggaaa
atgtgagctgtagcagtggtggggatggaggatgcaggctgcttgaatat
caccactacatttctgcttcccaggacactgagttttagtttcattagga
atttctaatgaaaagagaagttgcttttagcaaatattatttgcttgttt
gagtcagaaactgcttgtgaactgaagccatatcaaggcacctctgcgat
actgttttggacttgtactatttactttgtgttcctggagtctacaaagt
atataacatggcaaataggtctttgcctgactcttcatgacaccagcatg
ttaaccaacccaggctatctcttatgagttgtggagctctttcatggtta
aagaaaccatctcaccaccctggctcttgcatacacttaaagatatataa
ccggggctagagagatggctcagcagttaagagcactgattgctcttcca
gaggtcttgagttcaattcccagcaaccacatggtggctcacagccatct
gtaaggatgcagtcttctggtgtgtctgaagacagctgcagtgtactcat
aattaaagataaacaaatctttaagatacataaccttccccatgttgtta
ccttacatacccttacgagtgaagagaaggaggagtggaaatgataatct
cagagacatgagtgctggtatcccatcagtttagaagagaactcacctcc
cttagtcaccccacatgggagctaatacagcttgccagctttgacaccat
ctgggaataaaactacccttagactttaaggggatgggattttaatcctt
aggctctttcttccttagttgcattaaaaagacagcccatctggcctgta
gtgtacatgcccttaatcctagatcttgggaggctaaaggcagaccgatg
tcctgagggctaagaggttgtcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_74878033_74879175
seq2: B6Ng01-193M21.b_49_1201 (reverse)

seq1  TGTGGAGATGTGTGCATTTGAGTGTCAT-GCCATTAGGGA-CCAGAAGAG  48
      ||||||||  |||||| ||||| ||||| ||||||||||| |||||| ||
seq2  TGTGGAGAGTTGTGCA-TTGAGGGTCATGGCCATTAGGGACCCAGAAAAG  49

seq1  GA-CATCAAATCCCTTGG-AACTGGAGTTGCAGGCAGTTG-ACAGCTGCC  95
      || |||| |||||||||| ||||| ||||||  ||||||| |||||||||
seq2  GACCATC-AATCCCTTGGAAACTGAAGTTGCCAGCAGTTGAACAGCTGCC  98

seq1  TGACATGAATCTTTTGCAACAATGTTGTCTGCTTTT-AACCGCTG-AGCC  143
      ||||||||||| |||||||||||||||||||||||| |||||||| ||||
seq2  TGACATGAATCCTTTGCAACAATGTTGTCTGCTTTTAAACCGCTGAAGCC  148

seq1  AT-CTACCAGACCTTCA-TCTTTGCTTCCTGATGC-AGAAACCCT-GGAA  189
      || ||||||   ||||| | ||||||||||||||| ||||||||| ||||
seq2  ATCCTACCAAGACTTCATTTTTTGCTTCCTGATGCAAGAAACCCTGGGAA  198

seq1  ACACCCACCACCTTTTCTATGTTCTGTTT-AAGGTATCAAAGAAGTGTGA  238
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ACACCCACCACCTTTTCTATGTTCTGTTTAAAGGTATCAAAGAAGTGTGA  248

seq1  AGCACACTTGAGGAATGGGGCTGTAAATTGATACAACCTCTATAGAAAAC  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACACTTGAGGAATGGGGCTGTAAATTGATACAACCTCTATAGAAAAC  298

seq1  ATATTGCACATAATTAAAACCCAGCAATTTTACTTCCAGAAATTTATCTC  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGCACATAATTAAAACCCAGCAATTTTACTTCCAGAAATTTATCTC  348

seq1  TAGCCTCATGCACTTATGGAGTGCCTTATGTGCAAATACCCATCACATCC  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTCATGCACTTATGGAGTGCCTTATGTGCAAATACCCATCACATCC  398

seq1  TTGTTCATCCTCGTGAACACTGGACAGCACGTGTTCGTCATGAGAACCAG  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCATCCTCGTGAACACTGGACAGCACGTGTTCGTCATGAGAACCAG  448

seq1  CTTTACATTGCACTATCTCTCATAAATGGAATATTATTCAGCTTAGAAAA  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACATTGCACTATCTCTCATAAATGGAATATTATTCAGCTTAGAAAA  498

seq1  AACCCCAAGGACTAACATAGTTCTGTGTTGGGACTGGTTTCCAGGGGCAG  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCAAGGACTAACATAGTTCTGTGTTGGGACTGGTTTCCAGGGGCAG  548

seq1  GGATGGAGTTCAGAGGCAAGAGCGCGTGCTTAGCATGTCCAGAAACCTGG  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGAGTTCAGAGGCAAGAGCGCGTGCTTAGCATGTCCAGAAACCTGG  598

seq1  GCTTCAGCCCCAAGACCAAACAAACTGGGCGTGGTGGCACATGCCTCCAG  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAGCCCCAAGACCAAACAAACTGGGCGTGGTGGCACATGCCTCCAG  648

seq1  TACCAGCATTCTGGAAGCAGAAGGGTAAGAAATTCAAAGTCATCCTGAAT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGCATTCTGGAAGCAGAAGGGTAAGAAATTCAAAGTCATCCTGAAT  698

seq1  TACAGAGAGTCTGAAGGCAGCCTCGCCTGGATACTCTGTTTTGTTTTGTC  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGAGTCTGAAGGCAGCCTCGCCTGGATACTCTGTTTTGTTTTGTC  748

seq1  TTGTTTTGCTTTTCCAAAATAAATTATTAAAGAAGAAAACAAGAGATGGA  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGCTTTTCCAAAATAAATTATTAAAGAAGAAAACAAGAGATGGA  798

seq1  GACTGTTTTAAATGAGCTCCTATGGGGAGATAGGAGGCAGAGACAGGAGA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTTTTAAATGAGCTCCTATGGGGAGATAGGAGGCAGAGACAGGAGA  848

seq1  GTTGATCCAAAGCTTGTGTATGTGGCACAGTAGCAGAAATAATGAGAATC  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATCCAAAGCTTGTGTATGTGGCACAGTAGCAGAAATAATGAGAATC  898

seq1  TGCCTCAAAAACAAGGTGGAAGGAAGGAACCAACTCTTCAAAACTTGTTC  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCAAAAACAAGGTGGAAGGAAGGAACCAACTCTTCAAAACTTGTTC  948

seq1  TCTTACTTCTATCTGAGCCGCACTGCCCCAAATATATAAATGTAAACACA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACTTCTATCTGAGCCGCACTGCCCCAAATATATAAATGTAAACACA  998

seq1  ACAGATTAAAGAAGGAAGGAGGGGAGAAAGGAAGGAAAGAAGAAAGAAAA  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATTAAAGAAGGAAGGAGGGGAGAAAGGAAGGAAAGAAGAAAGAAAA  1048

seq1  GAAAGAGAATTGAGGATAGAAAGAACTTGGTCCTGAGCAGAGTTGAAGTT  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGAATTGAGGATAGAAAGAACTTGGTCCTGAGCAGAGTTGAAGTT  1098

seq1  TTAGAACCTGGGCTGCTTGAGTTCCAAGACTCCTTATGGTATGTGACAAG  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAACCTGGGCTGCTTGAGTTCCAAGACTCCTTATGGTATGTGACAAG  1148

seq1  AATTC  1143
      |||||
seq2  AATTC  1153

seq1: chr1_74722462_74723525
seq2: B6Ng01-193M21.g_66_1138

seq1  GAATTCAGCCTTTTTAGTATGTTAGCTTTTGAAACTATTCAAACTGATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCCTTTTTAGTATGTTAGCTTTTGAAACTATTCAAACTGATTT  50

seq1  GGAAATAAATTGATTTCCTCAAATTATTAGGATTTAGACTGCCTCAAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATAAATTGATTTCCTCAAATTATTAGGATTTAGACTGCCTCAAACT  100

seq1  TTTTAAGTTTGGCATCACATTCCTTTGGGCACTGGGCATTCCATGGGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGTTTGGCATCACATTCCTTTGGGCACTGGGCATTCCATGGGAAA  150

seq1  ATGTGAGCTGTAGCAGTGGTGGGGATGGAGGATGCAGGCTGCTTGAATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAGCTGTAGCAGTGGTGGGGATGGAGGATGCAGGCTGCTTGAATAT  200

seq1  CACCACTACATTTCTGCTTCCCAGGACACTGAGTTTTAGTTTCATTAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACTACATTTCTGCTTCCCAGGACACTGAGTTTTAGTTTCATTAGGA  250

seq1  ATTTCTAATGAAAAGAGAAGTTGCTTTTAGCAAATATTATTTGCTTGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTAATGAAAAGAGAAGTTGCTTTTAGCAAATATTATTTGCTTGTTT  300

seq1  GAGTCAGAAACTGCTTGTGAACTGAAGCCATATCAAGGCACCTCTGCGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAGAAACTGCTTGTGAACTGAAGCCATATCAAGGCACCTCTGCGAT  350

seq1  ACTGTTTTGGACTTGTACTATTTACTTTGTGTTCCTGGAGTCTACAAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTTGGACTTGTACTATTTACTTTGTGTTCCTGGAGTCTACAAAGT  400

seq1  ATATAACATGGCAAATAGGTCTTTGCCTGACTCTTCATGACACCAGCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAACATGGCAAATAGGTCTTTGCCTGACTCTTCATGACACCAGCATG  450

seq1  TTAACCAACCCAGGCTATCTCTTATGAGTTGTGGAGCTCTTTCATGGTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCAACCCAGGCTATCTCTTATGAGTTGTGGAGCTCTTTCATGGTTA  500

seq1  AAGAAACCATCTCACCACCCTGGCTCTTGCATACACTTAAAGATATATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACCATCTCACCACCCTGGCTCTTGCATACACTTAAAGATATATAA  550

seq1  CCGGGGCTAGAGAGATGGCTCAGCAGTTAAGAGCACTGATTGCTCTTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGGCTAGAGAGATGGCTCAGCAGTTAAGAGCACTGATTGCTCTTCCA  600

seq1  GAGGTCTTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAGCCATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCTTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAGCCATCT  650

seq1  GTAAGGATGCAGTCTTCTGGTGTGTCTGAAGACAGCTGCAGTGTACTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGATGCAGTCTTCTGGTGTGTCTGAAGACAGCTGCAGTGTACTCAT  700

seq1  AATTAAAGATAAACAAATCTTTAAGATACATAACCTTCCCCATGTTGTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAGATAAACAAATCTTTAAGATACATAACCTTCCCCATGTTGTTA  750

seq1  CCTTACATACCCTTACGAGTGAAGAGAAGGAGGAGTGGAAATGATAATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACATACCCTTACGAGTGAAGAGAAGGAGGAGTGGAAATGATAATCT  800

seq1  CAGAGACATGAGTGCTGGTATCCCATCAG-TTAGAAGAGAACTCACCTCC  849
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CAGAGACATGAGTGCTGGTATCCCATCAGTTTAGAAGAGAACTCACCTCC  850

seq1  CTTAGTCA-CCCACATGGGAGCTAATACAGCTTGCCAGC-TTGACACCAT  897
      |||||||| |||||||||||||||||||||||||||||| ||||||||||
seq2  CTTAGTCACCCCACATGGGAGCTAATACAGCTTGCCAGCTTTGACACCAT  900

seq1  CTGGG-ATAAAACTACCCTTAGACTTTAAGGGGATGGGATTTT-ATCCTT  945
      ||||| ||||||||||||||||||||||||||||||||||||| ||||||
seq2  CTGGGAATAAAACTACCCTTAGACTTTAAGGGGATGGGATTTTAATCCTT  950

seq1  AGGCTCTTTCTTCCTTAGTTGCATT-AAAAGACAAGCCATCTGG-CTGTA  993
      ||||||||||||||||||||||||| ||||||||  |||||||| |||||
seq2  AGGCTCTTTCTTCCTTAGTTGCATTAAAAAGACAGCCCATCTGGCCTGTA  1000

seq1  GTGGTACATGCCTTTAATCCTAGATCTTGGGAAGCT-AAGGCAGACAGAT  1042
      || ||||||||| ||||||||||||||||||| ||| ||||||||| |||
seq2  GT-GTACATGCCCTTAATCCTAGATCTTGGGAGGCTAAAGGCAGACCGAT  1049

seq1  GT-CTGAGGGCT-AGAGGTTGTCC  1064
      || ||||||||| |||||||||||
seq2  GTCCTGAGGGCTAAGAGGTTGTCC  1073