BAC Information

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BAC

Clone NameB6Ng01-193O08
Chromosome1 (Build37)
Map Location 133,254,762 - 133,378,698
singlet/doubletdoublet
Overlap geneSrgap2, LOC100042826, LOC100042821
Upstream geneDaf2, Cd55, Zp3r, C4bp, C4bp-ps1, Pfkfb2, Yod1, AA986860, Fcamr, Pigr, Faim3, Il24, Il20, Il19, Il10, Mapkapk2, Dyrk3, Lgtn, Rassf5, Ikbke
Downstream gene2700049P18Rik, Avpr1b, LOC667238, Ctse, 5430435G22Rik, Slc26a9, 4732466D17Rik, Slc41a1, Rab7l1, Nucks1, Slc45a3, Elk4, Mfsd4, Pctk3, LOC100042221, Lemd1, EG638532, Klhdc8a, Nuak2, Tmcc2, Ripk5, Rbbp5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-193O08.bB6Ng01-193O08.g
ACCGA016736GA016737
length9641,089
definitionB6Ng01-193O08.b B6Ng01-193O08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(133,254,762 - 133,255,733)(133,377,595 - 133,378,698)
sequence
gaattcaaacttagatctatctaactccaaagtctacatcttatccacta
atggaccgtgactatcctctaaataggactgaagctggactacctgggag
gaaagataaaggacaggcaaggaaatcctaagaaagacgctgatctcatt
tagaaatgaaactgatcaaatgagagcagcatctcatttaggggctgttt
tagactccagataacaattggcaatgtctagaacttagaagttgctagta
ggtagagacagagagacatggagagtccataacaaaaacatgtctgtttt
agaatttcagtggtgctcaggctgggaaaacctggtaccttgtgggtacg
tggaggttcacctggagttggaagaggaatacagaggtacagtacagcct
caattatgtcacattttagattgagaaaaatttaaatattcacctcacag
tgaacctggcatcatttcctggaagcttcaccttccacgtaccctgtata
ccaacaatcaatggtattaacaaagcttttctaggacacctgaccagatc
attacttgtccaggttaagaagttagaaaggcacctgccctgctgcctga
agaagggcagacaaggggatctttttctcttttttcacttgaatgagaca
aaggaattcaagcattagagtaaagcattataaaacagtgaatttttatt
ttatgaagtacaggctaaagaggaaacatggcaaataaacatgggagatc
aaagcactcaaatgtagtaaaacagcaacttgcccttaaagaatacaagg
aagcctctcatgaaaagaaattaaaattttcatagttaggaaatgttgta
tatgcttcacttccaaatatgagtagcagtcaggggtggtggtgacacct
tatccagaactcagagacagagcaggtggatctctgagttcgaagccagc
ctgttctatagaga
gaattccattgaactttaaaagttaaaaggctggacttgaaatgcatgat
gcgtaactatagcaaaccacagtgagtagctagaaagtatagacaacttc
tggtcactcaatggctacagattaattgacttgaatatattaatgtctgt
taatggtctaatcatttggcttctctgtctgatgtgagatagagagtaat
ttgcccaggttgcatcctcctggaacccccccccccacacacacacctgt
cactgtcctcagatgatcattggtttaacttgatctagattaagtaagtt
aaatatatatcactacttattatttaatactaacaattacacaccatcag
ggtattaataaaaagatacatctttaatttgaacctgataaaagatgggt
gtcttcagagggcctgctatggcatttcctccaagtacattctctgaaaa
ggaccaggcctggatataaaaccattgcacttcctcattgctttatgtat
aaaaagacaatctcatttcccctttttttcttattctagataccacattt
atctggctactccaaaagatcatgaaagaacagaaattttttatcttaac
agtggtacagagaaacttggcatctctttcaccattgataaaaagttttg
agaaacaagtgtagggaaaatactgcctatagacttgaaaaccatttact
tagttaacagaatgctcttaattatgttaactatgtgctttgattattca
aggtctctatgctcttaatatttcagacaatgttctgttgatgctatgaa
ttagccagtaggtgtcttcatttgatgagaaagagggggaaggtaaaatg
agacatcaattgcccgcagatggagaatttacctagcatgtatagattct
gagttaatcacctgtacctcaatcagcacaacaaacttgtaagccagaaa
tccatgaagtcactatgagtagcctcctgtaggattcccatacctgagtt
tagggagtatatagacttcagcaaatatttcagtgtataagagcatactt
gcttagagtatgtcacactaaggtttctgggttacattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_133254762_133255733
seq2: B6Ng01-193O08.b_43_1006

seq1  GAATTCAAACTTAGATCTATCTAACTCCAAAGTCTACATCTTATCCACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACTTAGATCTATCTAACTCCAAAGTCTACATCTTATCCACTA  50

seq1  ATGGACCGTGACTATCCTCTAAATAGGACTGAAGCTGGACTACCTGGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACCGTGACTATCCTCTAAATAGGACTGAAGCTGGACTACCTGGGAG  100

seq1  GAAAGATAAAGGACAGGCAAGGAAATCCTAAGAAAGACGCTGATCTCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGATAAAGGACAGGCAAGGAAATCCTAAGAAAGACGCTGATCTCATT  150

seq1  TAGAAATGAAACTGATCAAATGAGAGCAGCATCTCATTTAGGGGCTGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATGAAACTGATCAAATGAGAGCAGCATCTCATTTAGGGGCTGTTT  200

seq1  TAGACTCCAGATAACAATTGGCAATGTCTAGAACTTAGAAGTTGCTAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTCCAGATAACAATTGGCAATGTCTAGAACTTAGAAGTTGCTAGTA  250

seq1  GGTAGAGACAGAGAGACATGGAGAGTCCATAACAAAAACATGTCTGTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAGACAGAGAGACATGGAGAGTCCATAACAAAAACATGTCTGTTTT  300

seq1  AGAATTTCAGTGGTGCTCAGGCTGGGAAAACCTGGTACCTTGTGGGTACG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTCAGTGGTGCTCAGGCTGGGAAAACCTGGTACCTTGTGGGTACG  350

seq1  TGGAGGTTCACCTGGAGTTGGAAGAGGAATACAGAGGTACAGTACAGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGTTCACCTGGAGTTGGAAGAGGAATACAGAGGTACAGTACAGCCT  400

seq1  CAATTATGTCACATTTTAGATTGAGAAAAATTTAAATATTCACCTCACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTATGTCACATTTTAGATTGAGAAAAATTTAAATATTCACCTCACAG  450

seq1  TGAACCTGGCATCATTTCCTGGAAGCTTCACCTTCCACGTACCCTGTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCTGGCATCATTTCCTGGAAGCTTCACCTTCCACGTACCCTGTATA  500

seq1  CCAACAATCAATGGTATTAACAAAGCTTTTCTAGGACACCTGACCAGATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAATCAATGGTATTAACAAAGCTTTTCTAGGACACCTGACCAGATC  550

seq1  ATTACTTGTCCAGGTTAAGAAGTTAGAAAGGCACCTGCCCTGCTGCCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTTGTCCAGGTTAAGAAGTTAGAAAGGCACCTGCCCTGCTGCCTGA  600

seq1  AGAAGGGCAGACAAGGGGATCTTTTTCTCTTTTTTCACTTGAATGAGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGGCAGACAAGGGGATCTTTTTCTCTTTTTTCACTTGAATGAGACA  650

seq1  AAGGAATTCAAGCATTAGAGTAAAGCATTATAAAACAGTGAATTTTTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAATTCAAGCATTAGAGTAAAGCATTATAAAACAGTGAATTTTTATT  700

seq1  TTATGAAGTACAGGCTAAAGAGGAAACATGGCAAATAAACATGGGAGATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAAGTACAGGCTAAAGAGGAAACATGGCAAATAAACATGGGAGATC  750

seq1  AAAGCACTCAAATGTAGTAAAACAGCAACTTGCCCTTAAAGAATACAAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCACTCAAATGTAGTAAAACAGCAACTTGCCCTTAAAGAATACAAGG  800

seq1  AAGCCTCTCATGAAAAGAAATTAAAATTTTCATAGTTAGGAAATGTTGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTCTCATGAAAAGAAATTAAAATTTTCATAGTTAGGAAATGTTGTA  850

seq1  TATGCTTCACTTCCAAAATATGAGTAAGCAGTCAGGGGTGGTGGTGGACA  900
      |||||||||||||| |||||||||| ||||||||||||||||||| ||||
seq2  TATGCTTCACTTCC-AAATATGAGT-AGCAGTCAGGGGTGGTGGT-GACA  897

seq1  CCTTTAATCCCAGAACTCAGGAGACAGAGGCAGGTGGATCTCTGAGTTTG  950
      ||||  || |||||||||| |||||||| ||||||||||||||||||| |
seq2  CCTT--AT-CCAGAACTCA-GAGACAGA-GCAGGTGGATCTCTGAGTTCG  942

seq1  AAGCCAGCCTGTTCTATAGAGA  972
      ||||||||||||||||||||||
seq2  AAGCCAGCCTGTTCTATAGAGA  964

seq1: chr1_133377595_133378698
seq2: B6Ng01-193O08.g_64_1152 (reverse)

seq1  CAATAGTAAACCAGAAAACCTAAGTGTGACATACTCTAAACCAAAGTATG  50
      |||| |||| |||| |||||| ||||||||||||||||| |  |||||||
seq2  CAAT-GTAACCCAG-AAACCTTAGTGTGACATACTCTAAGC--AAGTATG  46

seq1  CTCTTATAACCACCTGGAAATTATTTTGCCTGAGGTCTATATACTTCCCT  100
      ||||||||  || |||  || |||||   |||| |||||||||| |||||
seq2  CTCTTATA--CA-CTG--AAATATTT--GCTGAAGTCTATATAC-TCCCT  88

seq1  TAACTCAGGTATGGGAAT-CTACAGGA-GCTACTCATAGTGACTTTCATG  148
       ||||||||||||||||| |||||||| ||||||||||||||| ||||||
seq2  AAACTCAGGTATGGGAATCCTACAGGAGGCTACTCATAGTGAC-TTCATG  137

seq1  GATTTTCTGGCTTAC-AGTTTGTTGTTGCTGATTTGAGGTACAGGTGATT  197
      || |||||||||||| ||||||||| |||||| |||||||||||||||||
seq2  GA-TTTCTGGCTTACAAGTTTGTTG-TGCTGA-TTGAGGTACAGGTGATT  184

seq1  AACTCAGAATCTTATACATGCTAGGTAAATTCTCCATCTGCGGGCAATTG  247
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGAATC-TATACATGCTAGGTAAATTCTCCATCTGCGGGCAATTG  233

seq1  ATTGTCTTCATTTTACCTT-CCCCTCTTTCTCATCAAATGAAGACACCTA  296
      | |||| |||||||||||| ||||||||||||||||||||||||||||||
seq2  A-TGTC-TCATTTTACCTTCCCCCTCTTTCTCATCAAATGAAGACACCTA  281

seq1  CTGGCTAATTCATAGCATCAACAGAACATTGTCTGAAATATTAAGAGCAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTAATTCATAGCATCAACAGAACATTGTCTGAAATATTAAGAGCAT  331

seq1  AGAGACCTTGAATAATCAAAGCACATAGTTAACATAATTAAGAGCATTCT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACCTTGAATAATCAAAGCACATAGTTAACATAATTAAGAGCATTCT  381

seq1  GTTAACTAAGTAAATGGTTTTCAAGTCTATAGGCAGTATTTTCCCTACAC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACTAAGTAAATGGTTTTCAAGTCTATAGGCAGTATTTTCCCTACAC  431

seq1  TTGTTTCTCAAAACTTTTTATCAATGGTGAAAGAGATGCCAAGTTTCTCT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCTCAAAACTTTTTATCAATGGTGAAAGAGATGCCAAGTTTCTCT  481

seq1  GTACCACTGTTAAGATAAAAAATTTCTGTTCTTTCATGATCTTTTGGAGT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCACTGTTAAGATAAAAAATTTCTGTTCTTTCATGATCTTTTGGAGT  531

seq1  AGCCAGATAAATGTGGTATCTAGAATAAGAAAAAAAGGGGAAATGAGATT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGATAAATGTGGTATCTAGAATAAGAAAAAAAGGGGAAATGAGATT  581

seq1  GTCTTTTTATACATAAAGCAATGAGGAAGTGCAATGGTTTTATATCCAGG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTTTATACATAAAGCAATGAGGAAGTGCAATGGTTTTATATCCAGG  631

seq1  CCTGGTCCTTTTCAGAGAATGTACTTGGAGGAAATGCCATAGCAGGCCCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTCCTTTTCAGAGAATGTACTTGGAGGAAATGCCATAGCAGGCCCT  681

seq1  CTGAAGACACCCATCTTTTATCAGGTTCAAATTAAAGATGTATCTTTTTA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGACACCCATCTTTTATCAGGTTCAAATTAAAGATGTATCTTTTTA  731

seq1  TTAATACCCTGATGGTGTGTAATTGTTAGTATTAAATAATAAGTAGTGAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATACCCTGATGGTGTGTAATTGTTAGTATTAAATAATAAGTAGTGAT  781

seq1  ATATATTTAACTTACTTAATCTAGATCAAGTTAAACCAATGATCATCTGA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTTAACTTACTTAATCTAGATCAAGTTAAACCAATGATCATCTGA  831

seq1  GGACAGTGACAGGTGTGTGTGTGGGGGGGGGGGTTCCAGGAGGATGCAAC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGTGACAGGTGTGTGTGTGGGGGGGGGGGTTCCAGGAGGATGCAAC  881

seq1  CTGGGCAAATTACTCTCTATCTCACATCAGACAGAGAAGCCAAATGATTA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCAAATTACTCTCTATCTCACATCAGACAGAGAAGCCAAATGATTA  931

seq1  GACCATTAACAGACATTAATATATTCAAGTCAATTAATCTGTAGCCATTG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATTAACAGACATTAATATATTCAAGTCAATTAATCTGTAGCCATTG  981

seq1  AGTGACCAGAAGTTGTCTATACTTTCTAGCTACTCACTGTGGTTTGCTAT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACCAGAAGTTGTCTATACTTTCTAGCTACTCACTGTGGTTTGCTAT  1031

seq1  AGTTACGCATCATGCATTTCAAGTCCAGCCTTTTAACTTTTAAAGTTCAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACGCATCATGCATTTCAAGTCCAGCCTTTTAACTTTTAAAGTTCAA  1081

seq1  TGGAATTC  1104
      ||||||||
seq2  TGGAATTC  1089