BAC Information

Click to search

BAC

Clone NameB6Ng01-194B04
Chromosome1 (Build37)
Map Location 68,188,086 - 68,189,214
singlet/doubletsinglet
Overlap geneErbb4
Upstream geneCps1, Kif22-ps
Downstream geneLOC667842
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-194B04.bB6Ng01-194B04.g
ACCGA016867GA016868
length1,116901
definitionB6Ng01-194B04.b B6Ng01-194B04.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttaaaggcaccactttctttcacttaacgtctgagtcagtgta
ccaagtgactgatacttgaagtctagactaatgggcacatggcagtacca
cttgttctgaaaacaaagagcatctgttttcccagaaattctgactttta
gaatgaataattttaaatgtcaagtcactatgccaagggacatattttga
gtatttgtctactaaagccaatgtttccacacattttttttaaacttagt
tgaaaagttttgacatcaaagaaatgctataatggtattgtgattaatat
ttacatttatctttgttatcgaactaatttgatacatttgaatggtgtga
aattccccctattttaaaatataacagcaaagatataagaagtattcttg
tgtctgtgtaggcgtgtgaatttattcatagtctcaggccattcaggctg
gcctcaggacactcttgcctgtttcccaagtgctcagatgacaggtgtac
accacaatacctggttactcagaacaaaatgcaggactttgttcttggaa
gcaaacactttgccaatttatctaagtcctcaagtcctcatcaagtacag
tctacagaaaagataaattgattaccttaggaatgtgtttgctgatgtat
ttgttaggttctaaaaagaaaatgggagctacaatgacttatcaaccaaa
ggaggaagaacatataactttatttttgaaaatattttcttttaaatttc
acataccaattcacattaggtaggtgttttatttttaatctcaataaatg
tatctgtggctcagatgttaataccattccttttttaaataggagaaaaa
ctgatagttgagagatttatataacttccacagtgtcatatatagtgatc
ataaatagctgaaataaggttagacaacaaagtaaacctgagttccagac
atacacattacttttttcatatcaaagagaagcagtactaggagttaatc
tcattttctacttgaactggagtggcagatgataaacaaatgagtactat
gcacttctctgtgattttctttgagtcacaatgctatagaatgaagtacc
tggcaagtctttcaga

gaattcctgatctttccaagacttttatcatgaatgggtgttggattttg
tcatatgctttctcagcatctaatgagatgatcatgtagtttttgttttg
gagtttgtttatataatggattacattgatggatttctgtatttcaaccg
tccctgaatccctgggatgaaacctacttggtcaggatggaaaattgttt
tgatgtgttcttggataaggttagcgagaattttattgagtatttttgca
ttgatattcataagggaaattggtctgaagttctctatctttgttaggtc
tttccgtggtttaggtatcagagtaattgtggcttcatagaatgaattgg
gtagggtaccttctgcttctattttgtggaatagtttgtgaagaactgga
attagatcttctttgaaggtctgatagaactctgcactaaacccatctgg
tcctgggctttttttggttgggagactattaatgactgcttctatttctt
taggggatatagcactgtttagatcattaacctgatcctgatttaacttt
gatacctggtatctgtctagaaatttgtccatttcatccaggttttccag
ttttgttgagtatagccttttgtagaaggatctgatggtgtattggattt
cttcagggtttgtcattatgtctcccttttcatcctgattttgttaatta
ggatgctgtccctgtgccctctagtgagtctgggtaagggtttatctatc
ttgttgatttttctcaaagaaccagttcatcaattggttgattctttgaa
tagttcttcttgtttccacttggttgatttcgctcctgagtttgattatt
tcctgccttcttacttcctctttggggaatttgcttccctttgttctaga
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_68188086_68189214
seq2: B6Ng01-194B04.b_46_1161 (reverse)

seq1  TCTGAAAGACCTTGCAAGTACCTTCAATTCTATAGCCATGTTGACTCAAA  50
      ||||||||| ||||| ||   |||| ||||||||| |||  |||||||||
seq2  TCTGAAAGA-CTTGCCAGGTACTTC-ATTCTATAG-CATTGTGACTCAAA  47

seq1  GAAAATCACAAGAGAAGTGGCATTAGTAACTTCCATTTGTTTATCATCTG  100
      ||||||||| |||||||| ||| |||| |||  |||||||||||||||||
seq2  GAAAATCAC-AGAGAAGT-GCA-TAGT-ACT--CATTTGTTTATCATCTG  91

seq1  CCACTCCAGTTCAAGGTAGGAAAATGAGATTAACTTCCTAGTACTGCTTC  150
      |||||||||||||| ||| ||||||||||||||| |||||||||||||||
seq2  CCACTCCAGTTCAA-GTA-GAAAATGAGATTAAC-TCCTAGTACTGCTTC  138

seq1  TCTTTTGATATGAAAAAAGTAATGTGTATGTCTGGAACTCAGGTTTACTT  200
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TC-TTTGATATGAAAAAAGTAATGTGTATGTCTGGAACTCAGGTTTACTT  187

seq1  TGTTGTCTAACCTTATTTCAGCTATTTATGATCACTATATATGACACTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTCTAACCTTATTTCAGCTATTTATGATCACTATATATGACACTGT  237

seq1  GGAAGTTATATAAATCTCTCAACTATCAGTTTTTCTCCTATTTAAAAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTTATATAAATCTCTCAACTATCAGTTTTTCTCCTATTTAAAAAAG  287

seq1  GAATGGTATTAACATCTGAGCCACAGATACATTTATTGAGATTAAAAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGTATTAACATCTGAGCCACAGATACATTTATTGAGATTAAAAATA  337

seq1  AAACACCTACCTAATGTGAATTGGTATGTGAAATTTAAAAGAAAATATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACCTACCTAATGTGAATTGGTATGTGAAATTTAAAAGAAAATATTT  387

seq1  TCAAAAATAAAGTTATATGTTCTTCCTCCTTTGGTTGATAAGTCATTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAATAAAGTTATATGTTCTTCCTCCTTTGGTTGATAAGTCATTGTA  437

seq1  GCTCCCATTTTCTTTTTAGAACCTAACAAATACATCAGCAAACACATTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCATTTTCTTTTTAGAACCTAACAAATACATCAGCAAACACATTCC  487

seq1  TAAGGTAATCAATTTATCTTTTCTGTAGACTGTACTTGATGAGGACTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTAATCAATTTATCTTTTCTGTAGACTGTACTTGATGAGGACTTGA  537

seq1  GGACTTAGATAAATTGGCAAAGTGTTTGCTTCCAAGAACAAAGTCCTGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTAGATAAATTGGCAAAGTGTTTGCTTCCAAGAACAAAGTCCTGCA  587

seq1  TTTTGTTCTGAGTAACCAGGTATTGTGGTGTACACCTGTCATCTGAGCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTCTGAGTAACCAGGTATTGTGGTGTACACCTGTCATCTGAGCAC  637

seq1  TTGGGAAACAGGCAAGAGTGTCCTGAGGCCAGCCTGAATGGCCTGAGACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAAACAGGCAAGAGTGTCCTGAGGCCAGCCTGAATGGCCTGAGACT  687

seq1  ATGAATAAATTCACACGCCTACACAGACACAAGAATACTTCTTATATCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATAAATTCACACGCCTACACAGACACAAGAATACTTCTTATATCTT  737

seq1  TGCTGTTATATTTTAAAATAGGGGGAATTTCACACCATTCAAATGTATCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTTATATTTTAAAATAGGGGGAATTTCACACCATTCAAATGTATCA  787

seq1  AATTAGTTCGATAACAAAGATAAATGTAAATATTAATCACAATACCATTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGTTCGATAACAAAGATAAATGTAAATATTAATCACAATACCATTA  837

seq1  TAGCATTTCTTTGATGTCAAAACTTTTCAACTAAGTTTAAAAAAAATGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATTTCTTTGATGTCAAAACTTTTCAACTAAGTTTAAAAAAAATGTG  887

seq1  TGGAAACATTGGCTTTAGTAGACAAATACTCAAAATATGTCCCTTGGCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAACATTGGCTTTAGTAGACAAATACTCAAAATATGTCCCTTGGCAT  937

seq1  AGTGACTTGACATTTAAAATTATTCATTCTAAAAGTCAGAATTTCTGGGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACTTGACATTTAAAATTATTCATTCTAAAAGTCAGAATTTCTGGGA  987

seq1  AAACAGATGCTCTTTGTTTTCAGAACAAGTGGTACTGCCATGTGCCCATT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGATGCTCTTTGTTTTCAGAACAAGTGGTACTGCCATGTGCCCATT  1037

seq1  AGTCTAGACTTCAAGTATCAGTCACTTGGTACACTGACTCAGACGTTAAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAGACTTCAAGTATCAGTCACTTGGTACACTGACTCAGACGTTAAG  1087

seq1  TGAAAGAAAGTGGTGCCTTTAAAGAATTC  1129
      |||||||||||||||||||||||||||||
seq2  TGAAAGAAAGTGGTGCCTTTAAAGAATTC  1116


| Home | SequenceCutter | Blast | Download |