BAC Information

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BAC

Clone NameB6Ng01-195A19
Chromosome1 (Build37)
Map Location 52,153,904 - 52,246,283
singlet/doubletdoublet
Overlap geneStat4, Stat1, Gls
Upstream geneTmeff2, Sdpr, LOC383504, Obfc2a, Myo1b, EG667010, LOC667014, LOC100042634
Downstream geneLOC546735, Nab1, LOC546736, Gm553, LOC100042094, EG433305, 5330401P04Rik, 2210010L05Rik, Inpp1, Hibch, 1700019D03Rik, Gdf8, 1700019A02Rik, Pms1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-195A19.bB6Ng01-195A19.g
ACCGA017578GA017579
length1,1951,075
definitionB6Ng01-195A19.b B6Ng01-195A19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,153,904 - 52,155,087)(52,245,191 - 52,246,283)
sequence
gaattcaacatatgttgattggttgtctacatttttatttactgaatcag
gaatattcaacagaaagcataaagagaaatatctatccttgaactgtatc
atgtagtgatatattttctaaaatttaagtcatatctaaaaatctcctgg
agggtttctctgatgagatgaacaaaggatggtggtgagagtgttggcag
tgtgttgttttgaccaccttccaataacaccactgaactctaagaataaa
caagctgtggggttgaactgaatacattggttacaagcccgggcattgct
tgtgcatggttatctgttcacaattcctagctcatgctaaaggcccagta
aatgctgcaggaacaaatcagtgcatccattaacaagctccacttcaggc
aacctgagtaagattctactcaagagtgtattgtgttagactccaccttt
ccctttttatacagcattcaaaagtacgtaaaaacctccacttctttccc
ctaaacctcttcttccataagctgcacagtccttcagttcctgggtctgt
ccttggggatcttatgcctccaggagatttttggctacggcctcccaggc
tagtctgtgaaaggctgtttacttcatacgatagaaaactgcaacactga
cagtactgaatgttctgcagaaagagaccagacaactccaactctgacag
ctcacctctccagctttcacagtaaaaccctacttccagtgtggacttta
atcaggcactaggtcataatttaattagagtggttcattcccaaagcaaa
tttagatcaagatttatttatcttatgtatatgagtacactgttgctgtg
ttcaaacacattaaaagagggcatcagatcccattacacatggttgtgaa
ccaccatatggcagctgggaattgaactcaaaacctctggaagaacagta
agtggccttaaccactgagccacctctccagattctagataaagttcttt
agcatacttataagtcgataagtggcaaaagccactttggttgttatttt
tgagccaatgtgtgacatacgagaaattggtgtttttttcattgtttgag
gagcttatggaggtaactgcctgaattgcctagcatctagggtgccttga
aaggttcttgtttcctttccttaccgtactactgtacttcagcct
gaattcacttttgtcacgtaagcaaattttattagtgaggaaaaacgggg
tgggcatataagctaagctgtccctctcttaccctttttttttttttttt
ttatactttcctacctgtggactagttaaatgggtcgtattggaggtggt
cgtagaaaagcttcaaattgtctttataacaaaaacaggttccatttatt
ctttcagaaaattctgtttatgcttaatttatttaaaaatgtccttaatg
tgtgaatgttttgcctgcttatatatgtgtgctataactaaaatcctcgc
agaccagaagaaactgttgtattcctcacactggagttacagacagttgt
gagctgccatgtgggtactaggaatcaaattggggttctctgaaatagca
gtcagtgctcttaactgctgagtgttttactttcccagattataatttat
tttcagtcttcaaaaacttagcaatagaaattacaactaaatttctattc
ctgtcctgatgtcagtcctcttcctgtctctttggtctgttacactagtc
tgcaagtagttgctagaggtggtggtgaagctacacaggataaggcgtga
tctgttgaaatatgaataaaccagtgaatatctgatttcttacatgtatt
ctgtgtaactctttacaggatcttgtttctctgtgtaacttccataacta
tgataatttgagacactttgcaaaaaaacttgatcctcggagagaaggag
gtgatcaaagggtaagccagtccttccttagatccttctcagtgtcctct
aagatgagcaagcagccctcctgcttacgtaaacgtcagcttgttaacag
cctcaagtctttgccaattccaaataagttattttttattgtccgtcata
gatactaaaatcatttgtaatatttaaacaaaatgtagcttagcagtgct
ggttttaaagctaaagctgttttactcaaatatttgtcagtattgtcggg
ataaattagctcattgtctagttgtgcatgatatgtaatagatagtcata
ggactaatagaaaagccactggaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_52153904_52155087
seq2: B6Ng01-195A19.b_43_1237

seq1  GAATTCAACATATGTTGATTGGTTGTCTACATTTTTATTTACTGAATCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACATATGTTGATTGGTTGTCTACATTTTTATTTACTGAATCAG  50

seq1  GAATATTCAACAGAAAGCATAAAGAGAAATATCTATCCTTGAACTGTATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATTCAACAGAAAGCATAAAGAGAAATATCTATCCTTGAACTGTATC  100

seq1  ATGTAGTGATATATTTTCTAAAATTTAAGTCATATCTAAAAATCTCCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGTGATATATTTTCTAAAATTTAAGTCATATCTAAAAATCTCCTGG  150

seq1  AGGGTTTCTCTGATGAGATGAACAAAGGATGGTGGTGAGAGTGTTGGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTCTCTGATGAGATGAACAAAGGATGGTGGTGAGAGTGTTGGCAG  200

seq1  TGTGTTGTTTTGACCACCTTCCAATAACACCACTGAACTCTAAGAATAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTGTTTTGACCACCTTCCAATAACACCACTGAACTCTAAGAATAAA  250

seq1  CAAGCTGTGGGGTTGAACTGAATACATTGGTTACAAGCCCGGGCATTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTGTGGGGTTGAACTGAATACATTGGTTACAAGCCCGGGCATTGCT  300

seq1  TGTGCATGGTTATCTGTTCACAATTCCTAGCTCATGCTAAAGGCCCAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATGGTTATCTGTTCACAATTCCTAGCTCATGCTAAAGGCCCAGTA  350

seq1  AATGCTGCAGGAACAAATCAGTGCATCCATTAACAAGCTCCACTTCAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTGCAGGAACAAATCAGTGCATCCATTAACAAGCTCCACTTCAGGC  400

seq1  AACCTGAGTAAGATTCTACTCAAGAGTGTATTGTGTTAGACTCCACCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGAGTAAGATTCTACTCAAGAGTGTATTGTGTTAGACTCCACCTTT  450

seq1  CCCTTTTTATACAGCATTCAAAAGTACGTAAAAACCTCCACTTCTTTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTTTATACAGCATTCAAAAGTACGTAAAAACCTCCACTTCTTTCCC  500

seq1  CTAAACCTCTTCTTCCATAAGCTGCACAGTCCTTCAGTTCCTGGGTCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACCTCTTCTTCCATAAGCTGCACAGTCCTTCAGTTCCTGGGTCTGT  550

seq1  CCTTGGGGATCTTATGCCTCCAGGAGATTTTTGGCTACGGCCTCCCAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGGGATCTTATGCCTCCAGGAGATTTTTGGCTACGGCCTCCCAGGC  600

seq1  TAGTCTGTGAAAGGCTGTTTACTTCATACGATAGAAAACTGCAACACTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTGTGAAAGGCTGTTTACTTCATACGATAGAAAACTGCAACACTGA  650

seq1  CAGTACTGAATGTTCTGCAGAAAGAGACCAGACAACTCCAACTCTGACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACTGAATGTTCTGCAGAAAGAGACCAGACAACTCCAACTCTGACAG  700

seq1  CTCACCTCTCCAGCTTTCACAGTAAAACCCTACTTCCAGTGTGGACTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCTCTCCAGCTTTCACAGTAAAACCCTACTTCCAGTGTGGACTTTA  750

seq1  ATCAGGCACTAGGTCATAATTTAATTAGAGTGGTTCATTCCCAAAGCAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGCACTAGGTCATAATTTAATTAGAGTGGTTCATTCCCAAAGCAAA  800

seq1  TTTAGATCAAGATTTATTTATCTTATGTATATGAGTACACTGTTGCTGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGATCAAGATTTATTTATCTTATGTATATGAGTACACTGTTGCTGTG  850

seq1  TTCAAACACATTAAAAGAGGGCATCAGATCCCATTACACATGGTTGTGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAACACATTAAAAGAGGGCATCAGATCCCATTACACATGGTTGTGAA  900

seq1  CCACCATATGGCAGCTGGGAATTGAACTCAAAACCTCTGGAAGAACAGTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCATATGGCAGCTGGGAATTGAACTCAAAACCTCTGGAAGAACAGTA  950

seq1  AGTGGCCTTAACCACTGAGCCACCTCTCCAGATTCTAGATAAAGTTCTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCCTTAACCACTGAGCCACCTCTCCAGATTCTAGATAAAGTTCTTT  1000

seq1  AGCATAACTTATAAGTCGATAAGTGGCAAAAGCCACTTTGGTTG---TAT  1047
      ||||| ||||||||||||||||||||||||||||||||||||||   | |
seq2  AGCAT-ACTTATAAGTCGATAAGTGGCAAAAGCCACTTTGGTTGTTATTT  1049

seq1  TTGAGGCAATGTGTGACATACGGAGAAA----TGTGTTTTTCAGTG-TTG  1092
      ||||| ||||||||||||||| ||||||    ||| ||||||| || |||
seq2  TTGAGCCAATGTGTGACATAC-GAGAAATTGGTGTTTTTTTCATTGTTTG  1098

seq1  AGGAAGCTATGGAGGAAACTGCCTG-ATTG-CTAGCATC--AGGTGCCCT  1138
      ||||   |||||||| ||||||||| |||| ||||||||   |||||| |
seq2  AGGAGCTTATGGAGGTAACTGCCTGAATTGCCTAGCATCTAGGGTGCCTT  1148

seq1  GAAAGGGTTCTTG-TTCCTTTTCTTACTGTACTACTGTAC-TCAGCCT  1184
      |||| |||||||| ||||||| ||||| |||||||||||| |||||||
seq2  GAAA-GGTTCTTGTTTCCTTTCCTTACCGTACTACTGTACTTCAGCCT  1195

seq1: chr1_52245191_52246283
seq2: B6Ng01-195A19.g_61_1135 (reverse)

seq1  TCTCCAGTGGCCTTTTTCTTATTTAGTCTTATGAACCTATCTATTTACAT  50
      |||||||||||  ||||||   |||||| |||||  ||||||| ||||||
seq2  TCTCCAGTGGC--TTTTCT--ATTAGTCCTATGA--CTATCTA-TTACAT  43

seq1  ATCCATGCACAAACTAGACAATGAGCTAAATTTAATCCCGAACAATAACT  100
      || ||||||| ||||||||||||||||||  || |||||| ||||| |||
seq2  AT-CATGCAC-AACTAGACAATGAGCTAA--TTTATCCCG-ACAAT-ACT  87

seq1  GACAAATATTTGGAGTAAAAACAAGGCTTTAGCTTTAAAACCAGCACTGC  150
      ||||||||||| |||| ||||||  |||||||||||||||||||||||||
seq2  GACAAATATTT-GAGT-AAAACA--GCTTTAGCTTTAAAACCAGCACTGC  133

seq1  TAAGCTAACAATTTTGTTTAAATATTACAAATGATTTTAGTATCTATGAC  200
      |||||||   ||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTA--CATTTTGTTTAAATATTACAAATGATTTTAGTATCTATGAC  181

seq1  GGACAAT-AAAAATAACTTATTTGGAATTGGCAAAGACTTGAGGCTGTTA  249
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAATAAAAAATAACTTATTTGGAATTGGCAAAGACTTGAGGCTGTTA  231

seq1  ACAAGCTGACGTTTACGTAAGCAGGAGGGCTGCTTGCTCATCTTAGAGGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCTGACGTTTACGTAAGCAGGAGGGCTGCTTGCTCATCTTAGAGGA  281

seq1  CACTGAGAAGGATCTAAGGAAGGACTGGCTTACCCTTTGATCACCTCCTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGAAGGATCTAAGGAAGGACTGGCTTACCCTTTGATCACCTCCTT  331

seq1  CTCTCCGAGGATCAAGTTTTTTTGCAAAGTGTCTCAAATTATCATAGTTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCGAGGATCAAGTTTTTTTGCAAAGTGTCTCAAATTATCATAGTTA  381

seq1  TGGAAGTTACACAGAGAAACAAGATCCTGTAAAGAGTTACACAGAATACA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGTTACACAGAGAAACAAGATCCTGTAAAGAGTTACACAGAATACA  431

seq1  TGTAAGAAATCAGATATTCACTGGTTTATTCATATTTCAACAGATCACGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGAAATCAGATATTCACTGGTTTATTCATATTTCAACAGATCACGC  481

seq1  CTTATCCTGTGTAGCTTCACCACCACCTCTAGCAACTACTTGCAGACTAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCCTGTGTAGCTTCACCACCACCTCTAGCAACTACTTGCAGACTAG  531

seq1  TGTAACAGACCAAAGAGACAGGAAGAGGACTGACATCAGGACAGGAATAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACAGACCAAAGAGACAGGAAGAGGACTGACATCAGGACAGGAATAG  581

seq1  AAATTTAGTTGTAATTTCTATTGCTAAGTTTTTGAAGACTGAAAATAAAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAGTTGTAATTTCTATTGCTAAGTTTTTGAAGACTGAAAATAAAT  631

seq1  TATAATCTGGGAAAGTAAAACACTCAGCAGTTAAGAGCACTGACTGCTAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATCTGGGAAAGTAAAACACTCAGCAGTTAAGAGCACTGACTGCTAT  681

seq1  TTCAGAGAACCCCAATTTGATTCCTAGTACCCACATGGCAGCTCACAACT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGAACCCCAATTTGATTCCTAGTACCCACATGGCAGCTCACAACT  731

seq1  GTCTGTAACTCCAGTGTGAGGAATACAACAGTTTCTTCTGGTCTGCGAGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTAACTCCAGTGTGAGGAATACAACAGTTTCTTCTGGTCTGCGAGG  781

seq1  ATTTTAGTTATAGCACACATATATAAGCAGGCAAAACATTCACACATTAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGTTATAGCACACATATATAAGCAGGCAAAACATTCACACATTAA  831

seq1  GGACATTTTTAAATAAATTAAGCATAAACAGAATTTTCTGAAAGAATAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATTTTTAAATAAATTAAGCATAAACAGAATTTTCTGAAAGAATAAA  881

seq1  TGGAACCTGTTTTTGTTATAAAGACAATTTGAAGCTTTTCTACGACCACC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACCTGTTTTTGTTATAAAGACAATTTGAAGCTTTTCTACGACCACC  931

seq1  TCCAATACGACCCATTTAACTAGTCCACAGGTAGGAAAGTATAAAAAAAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATACGACCCATTTAACTAGTCCACAGGTAGGAAAGTATAAAAAAAA  981

seq1  AAAAAAAAAAGGGTAAGAGAGGGACAGCTTAGCTTATATGCCCACCCCGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAGGGTAAGAGAGGGACAGCTTAGCTTATATGCCCACCCCGT  1031

seq1  TTTTCCTCACTAATAAAATTTGCTTACGTGACAAAAGTGAATTC  1093
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTCACTAATAAAATTTGCTTACGTGACAAAAGTGAATTC  1075