BAC Information

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BAC

Clone NameB6Ng01-195I03
Chromosome1 (Build37)
Map Location 95,545,404 - 95,698,255
singlet/doubletdoublet
Overlap geneBok, Thap4, Atg4b, Dtymk
Upstream geneOtos, Gpc1, Ankmy1, Dusp28, LOC100040511, Rnpepl1, Capn10, Gpr35, Aqp12, Kif1a, Agxt, 2310007B03Rik, E030010N08Rik, Sned1, Mterfd2, LOC665966, Pask, Ppp1r7, Tmem16g, Hdlbp, Sept2, Farp2, Stk25
Downstream geneIng5, D2hgdh, Gal3st2, LOC100041596, EG666009, EG619597, Neu4, Pdcd1, LOC666012, LOC666025, LOC100040685
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-195I03.bB6Ng01-195I03.g
ACCGA017908GA017909
length4791,154
definitionB6Ng01-195I03.b B6Ng01-195I03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,545,404 - 95,545,888)(95,697,110 - 95,698,255)
sequence
tctgtgtagaccaggctggcctcgaactcagagatccacctgcctcctga
gtgcagagattagagccctgtaccgccaccacctggctgatcttccagtc
ttacctggaaaagcaaagagaagggaagtgggaccaagcgggaggcgtgg
agccagggaagcctcctggaggttttagtgccacagaatggctggagccc
ttcgttctgaaccaccaagaacataggtggccatgcaagctgtgcctccg
cctccgccacagccacagccgggcatgtcaaaggatgagagacacggcac
tgggatagtaagaatttctgagggttggaagggtcagaagaggactcatc
tgacagtgtgcttaccatgaagacctgagttcagatgccccgcacccaca
tgcaagtcaggaaaggcagagcagttctgtagtcctggtgctgggagaca
gagaccggcgggggtggggttggggttgg

gaattccctcactctctctttgggttgtagtcttagtatctttaaaagct
tttagaacatctatttatttattattgtgcatgcgtgtgctggctagtct
atgtcagtttgactcaagctacctcaattgagaaaactggccccaccaga
ttggccagcagacaagcctggaagacattttcttcattggtcattgattt
gggagggcccggctggtggagatggcttagttaataaaatacaggctgaa
atgagagcctgggtttagtttcccaggttaaaaaaaaaaaaaacctagta
cggttgcttatccaaccgctggagaggtgagacggactcgttcctgggac
ttgtgagccagccagttcagccaaaactgagcttcaggtagaagctcctc
tctgaaaacacaaggtggaaaagtactgaaaagggaacataaggttgact
tttggccttgcgccctgtacactggacaccaacccctgatcctacaaatt
aagtaggttgggaattggaacaaccactttgcaggatattttaattttca
aaccaaccagtcaaaagtcttacaagtacttttgaaatcaagacttgcac
gtacattacttccttttctcggggagacttctttggcttcagagatggtc
caaagctgtctggaggttgaaagttaggtgtaggtgcaaggagagaactt
aagtgcaaacccctgtagacttcaggtgaagagtctgacttcagtcgagt
gtatctttgtctttctagaaagatcaacggaaatcggcaagcttctgaat
tcctacttggaaaagaaaacggaactagaggatcactccgtgcacctgct
cttctctgcaaaccgctgggaacaagtgtaaagacctgcgtcgttgctcc
cggttgtaacatgcacacttttgtgtgtggcaaagggtgcgagcacctgt
gtgtggcattgtgttgcaacacccgcacgtcgagaccagagccagcttgg
gaggttcctctaccctaccattcgacggcgtatttgagataaaaaattcg
acgtattttggaagataaaaatcgtcgtaattggaaaataaaattcgtcc
ggtatttgaagaataaacattcgtcgattttgaccatccgtatttaaccc
acat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_95545404_95545888
seq2: B6Ng01-195I03.b_39_523

seq1  GAATTCTCTGTGTAGACCAGGCTGGCCTCGAACTCAGAGATCCACCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTGTAGACCAGGCTGGCCTCGAACTCAGAGATCCACCTGCC  50

seq1  TCCTGAGTGCAGAGATTAGAGCCCTGTACCGCCACCACCTGGCTGATCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGTGCAGAGATTAGAGCCCTGTACCGCCACCACCTGGCTGATCTT  100

seq1  CCAGTCTTACCTGGAAAAGCAAAGAGAAGGGAAGTGGGACCAAGCGGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCTTACCTGGAAAAGCAAAGAGAAGGGAAGTGGGACCAAGCGGGAG  150

seq1  GCGTGGAGCCAGGGAAGCCTCCTGGAGGTTTTAGTGCCACAGAATGGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGGAGCCAGGGAAGCCTCCTGGAGGTTTTAGTGCCACAGAATGGCTG  200

seq1  GAGCCCTTCGTTCTGAACCACCAAGAACATAGGTGGCCATGCAAGCTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCTTCGTTCTGAACCACCAAGAACATAGGTGGCCATGCAAGCTGTG  250

seq1  CCTCCGCCTCCGCCACAGCCACAGCCGGGCATGTCAAAGGATGAGAGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCGCCTCCGCCACAGCCACAGCCGGGCATGTCAAAGGATGAGAGACA  300

seq1  CGGCACTGGGATAGTAAGAATTTCTGAGGGTTGGAAGGGTCAGAAGAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCACTGGGATAGTAAGAATTTCTGAGGGTTGGAAGGGTCAGAAGAGGA  350

seq1  CTCATCTGACAGTGTGCTTACCATGAAGACCTGAGTTCAGATGCCCCGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCTGACAGTGTGCTTACCATGAAGACCTGAGTTCAGATGCCCCGCA  400

seq1  CCCACATGCAAGTCAGGAAAGGCAGAGCAGTTCTGTAGTCCTGGTGCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACATGCAAGTCAGGAAAGGCAGAGCAGTTCTGTAGTCCTGGTGCTGG  450

seq1  GAGACAGAGACCGGCGGGGGTGGGGTTGGGGTTGG  485
      |||||||||||||||||||||||||||||||||||
seq2  GAGACAGAGACCGGCGGGGGTGGGGTTGGGGTTGG  485


seq1: chr1_95697110_95698255
seq2: B6Ng01-195I03.g_65_1218 (reverse)

seq1  ATGT-GGTTAAATAC-GATGGTCAAATACGACG-ATGTTTTATC-TCAAA  46
      |||| |||||||||| ||||||||||  ||||| ||||||  || |||||
seq2  ATGTGGGTTAAATACGGATGGTCAAAATCGACGAATGTTTATTCTTCAAA  50

seq1  TAC--GGCG-ATTTTTTATCTCAAATACGACGATTTTTTATCT---CAAA  90
      |||  | || ||||| | |  ||| |||||||| |||||||||    |||
seq2  TACCGGACGAATTTTATTTTCCAATTACGACGA-TTTTTATCTTCCAAAA  99

seq1  TACGTCGATTTTTTTATCTCAAATACGGCGTCGAATGGTAGGGTAGAGGA  140
      |||||||| |||||||||||||||||| ||||||||||||||||||||| 
seq2  TACGTCGAATTTTTTATCTCAAATACGCCGTCGAATGGTAGGGTAGAGG-  148

seq1  AACCTCCCAAGCTGGCCTCTGGTCTCGACGTGCGGGTGTTTGCACAC-AT  189
      ||||||||||||||| ||||||||||||||||||||||||   |||| ||
seq2  AACCTCCCAAGCTGG-CTCTGGTCTCGACGTGCGGGTGTTGCAACACAAT  197

seq1  GCCACACACAGGTGCTCGCACCC-TTGCCACACACAAAAGTGTGCATGTT  238
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GCCACACACAGGTGCTCGCACCCTTTGCCACACACAAAAGTGTGCATGTT  247

seq1  ACAACCGGGGAGCAACGACGCAGGTCTTTACACTTGTTCCCAGCGGTTTG  288
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACC-GGGAGCAACGACGCAGGTCTTTACACTTGTTCCCAGCGGTTTG  296

seq1  CAGAGAAGAGCAGGTGCACGGAGTGATCCTCTAGTTCCGTTTTCTTTTCC  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAGAGCAGGTGCACGGAGTGATCCTCTAGTTCCGTTTTCTTTTCC  346

seq1  AAGTAGGAATTCAGAAGCTTGCCGATTTCCGTTGATCTTTCTAGAAAGAC  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGGAATTCAGAAGCTTGCCGATTTCCGTTGATCTTTCTAGAAAGAC  396

seq1  AAAGATACACTCGACTGAAGTCAGACTCTTCACCTGAAGTCTACAGGGGT  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATACACTCGACTGAAGTCAGACTCTTCACCTGAAGTCTACAGGGGT  446

seq1  TTGCACTTAAGTTCTCTCCTTGCACCTACACCTAACTTTCAACCTCCAGA  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACTTAAGTTCTCTCCTTGCACCTACACCTAACTTTCAACCTCCAGA  496

seq1  CAGCTTTGGACCATCTCTGAAGCCAAAGAAGTCTCCCCGAGAAAAGGAAG  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTTGGACCATCTCTGAAGCCAAAGAAGTCTCCCCGAGAAAAGGAAG  546

seq1  TAATGTACGTGCAAGTCTTGATTTCAAAAGTACTTGTAAGACTTTTGACT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTACGTGCAAGTCTTGATTTCAAAAGTACTTGTAAGACTTTTGACT  596

seq1  GGTTGGTTTGAAAATTAAAATATCCTGCAAAGTGGTTGTTCCAATTCCCA  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGTTTGAAAATTAAAATATCCTGCAAAGTGGTTGTTCCAATTCCCA  646

seq1  ACCTACTTAATTTGTAGGATCAGGGGTTGGTGTCCAGTGTACAGGGCGCA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACTTAATTTGTAGGATCAGGGGTTGGTGTCCAGTGTACAGGGCGCA  696

seq1  AGGCCAAAAGTCAACCTTATGTTCCCTTTTCAGTACTTTTCCACCTTGTG  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAAAAGTCAACCTTATGTTCCCTTTTCAGTACTTTTCCACCTTGTG  746

seq1  TTTTCAGAGAGGAGCTTCTACCTGAAGCTCAGTTTTGGCTGAACTGGCTG  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGAGAGGAGCTTCTACCTGAAGCTCAGTTTTGGCTGAACTGGCTG  796

seq1  GCTCACAAGTCCCAGGAACGAGTCCGTCTCACCTCTCCAGCGGTTGGATA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACAAGTCCCAGGAACGAGTCCGTCTCACCTCTCCAGCGGTTGGATA  846

seq1  AGCAACCGTACTAGGTTTTTTTTTTTTTTAACCTGGGAAACTAAACCCAG  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACCGTACTAGGTTTTTTTTTTTTTTAACCTGGGAAACTAAACCCAG  896

seq1  GCTCTCATTTCAGCCTGTATTTTATTAACTAAGCCATCTCCACCAGCCGG  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCATTTCAGCCTGTATTTTATTAACTAAGCCATCTCCACCAGCCGG  946

seq1  GCCCTCCCAAATCAATGACCAATGAAGAAAATGTCTTCCAGGCTTGTCTG  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCCCAAATCAATGACCAATGAAGAAAATGTCTTCCAGGCTTGTCTG  996

seq1  CTGGCCAATCTGGTGGGGCCAGTTTTCTCAATTGAGGTAGCTTGAGTCAA  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCAATCTGGTGGGGCCAGTTTTCTCAATTGAGGTAGCTTGAGTCAA  1046

seq1  ACTGACATAGACTAGCCAGCACACGCATGCACAATAATAAATAAATAGAT  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACATAGACTAGCCAGCACACGCATGCACAATAATAAATAAATAGAT  1096

seq1  GTTCTAAAAGCTTTTAAAGATACTAAGACTACAACCCAAAGAGAGAGTGA  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTAAAAGCTTTTAAAGATACTAAGACTACAACCCAAAGAGAGAGTGA  1146

seq1  GGGAATTC  1146
      ||||||||
seq2  GGGAATTC  1154


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