BAC Information

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BAC

Clone NameB6Ng01-195J10
Chromosome1 (Build37)6 (Build37)
Map Location 52,420,833 - 52,421,666138,505,763 - 138,505,909
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneObfc2a, Myo1b, EG667010, LOC667014, Stat4, LOC100042634, Stat1, Gls, LOC546735
Downstream geneNab1, LOC546736, Gm553, LOC100042094, EG433305, 5330401P04Rik, 2210010L05Rik, Inpp1, Hibch, 1700019D03Rik, Gdf8, 1700019A02Rik, Pms1, LOC671024, Ormdl1, Osgepl1, Asnsd1, EG627858, EG627866
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-195J10.bB6Ng01-195J10.g
ACCGA017968GA017969
length847951
definitionB6Ng01-195J10.b B6Ng01-195J10.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(52,420,833 - 52,421,666)(138,505,763 - 138,505,909)
sequence
gaattcagtaaaaactgatacacattgaagcagatggagatggcaaaaaa
accaagggtatatttactataaataaccccctggccatcacttctaagtt
aaactatctggaaattctcagtaagtccagagctaatcctatgtaccgga
gataagagagactccagttcaaggtcacacacacctgcctggtccagttc
aaggccacacacacctgcctggtccagttcaaggccacatacacctgcct
ggtccagttcaaggtcacacacctacctggtccagcacctaatctttttc
aaggggaagaagaaatgatgtgactattaaatgatgatgaggtaacattc
cttttcctgtgtttctttcacccagtgccatcaagtgtctgaaacacaag
atccccgtggaaggacaagagcaatatctctgggtaaacactgacaagat
tgacctatgagtgttcactttatgcccattttattttacttaattcagat
gtttgatgagtggctcatgtgacttactaatcagtaagctaattaggggc
agcatgttagccagcagattctgaagggaggccactgaaattaggccaac
tctgccagcaaataaggtagctgacaatctcggccaagcagttatctgga
ggtttatgagcagtagatgaaatgttgggggtgagagggttcataatgta
gtaataaaagcatttgagggctttttaggcccctcaagaaatcatttcaa
gggctactttgaattttgtcttcgccttgctagctaccctaaccttttgt
caataatttctgagaaaaaatatacatacctttaaggtctaaaagcc

gaattctcccaccacatccttcttagactgcgactccaataaacctttcc
ttaagttgcttctctcatgcatctttgatctgcaatcttccctgccttca
agatatgctagggcaatagtggaacaaagtttgtgggagtaaccaaccaa
taactgacttgactttaaggctactccacaaaatgaaaaccatatccaac
gttgctcggttgtccacaaactagaaacgagataagccagggagagacct
aagggaaaatgtagcactactgttttgctactagaatgtagacatacagt
gacatctatcttactcatagagcagtgccttcctcagctgccatcagagg
agtgtcctcctgcagcagatgggaacaaatacagagacccacatccagac
actatgcagagagtgagagaacttggaacactcatccctaaatggaatgt
cttgatcaagtatttctcttttttaaaaaatatttttaattaggtatttt
cctcaattacatttccaatgctgtcgcaaaagtcccaacaccctcaccct
cactctcctacccacccactcccactttttggccctggcgttcccctgta
ctggggcatataaagtttgcatgtccaataggcctctctttccagtgatg
gccgactaggccatcttttgatacatatgcagctagagtcaagagttccg
gggttctggttagttcataatgttgttccatctatagggttgcagaaccc
tttagttccttgggtgctttctctagctcctccattgggggccctgttgt
ccatccaatagctgactgtgagcatccacttctgtgtttgctaggccccg
gcatagtctcacaagagacagctataacaggtcctttcagcaaaatcttg
ctagtgtatgcaatggtgtcatcgtttggaggctgattatgggatggatc
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_52420833_52421666
seq2: B6Ng01-195J10.b_49_894

seq1  GAATTCAGTAAAAACTGATACACATTGAAGCAGATGGAGATGGCAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTAAAAACTGATACACATTGAAGCAGATGGAGATGGCAAAAAA  50

seq1  ACCAAGGGTATATTTACTATAAATAACCCCCTGGCCATCACTTCTAAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGGGTATATTTACTATAAATAACCCCCTGGCCATCACTTCTAAGTT  100

seq1  AAACTATCTGGAAATTCTCAGTAAGTCCAGAGCTAATCCTATGTACCGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTATCTGGAAATTCTCAGTAAGTCCAGAGCTAATCCTATGTACCGGA  150

seq1  GATAAGAGAGACTCCAGTTCAAGGTCACACACACCTGCCTGGTCCAGTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGAGAGACTCCAGTTCAAGGTCACACACACCTGCCTGGTCCAGTTC  200

seq1  AAGGCCACACACACCTGCCTGGTCCAGTTCAAGGCCACATACACCTGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCACACACACCTGCCTGGTCCAGTTCAAGGCCACATACACCTGCCT  250

seq1  GGTCCAGTTCAAGGTCACACACCTACCTGGTCCAGCACCTAATCTTTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCAGTTCAAGGTCACACACCTACCTGGTCCAGCACCTAATCTTTTTC  300

seq1  AAGGGGAAGAAGAAATGATGTGACTATTAAATGATGATGAGGTAACATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGAAGAAGAAATGATGTGACTATTAAATGATGATGAGGTAACATTC  350

seq1  CTTTTCCTGTGTTTCTTTCACCCAGTGCCATCAAGTGTCTGAAACACAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCTGTGTTTCTTTCACCCAGTGCCATCAAGTGTCTGAAACACAAG  400

seq1  ATCCCCGTGGAAGGACAAGAGCAATATCTCTGGGTAAACACTGACAAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCGTGGAAGGACAAGAGCAATATCTCTGGGTAAACACTGACAAGAT  450

seq1  TGACCTATGAGTGTTCACTTTATGCCCATTTTATTTTACTTAATTCAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTATGAGTGTTCACTTTATGCCCATTTTATTTTACTTAATTCAGAT  500

seq1  GTTTGATGAGTGGCTCATGTGACTTACTAATCAGTAAGCTAATTAGGGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGATGAGTGGCTCATGTGACTTACTAATCAGTAAGCTAATTAGGGGC  550

seq1  AGCATGTTAGCCAGCAGATTCTGAAGGGAGGCCACTGAAATTAGGCCAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGTTAGCCAGCAGATTCTGAAGGGAGGCCACTGAAATTAGGCCAAC  600

seq1  TCTGCCAGCAAATAAGGTAGCTGACAATCTCGGCCAAGCAGTTATCTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCAGCAAATAAGGTAGCTGACAATCTCGGCCAAGCAGTTATCTGGA  650

seq1  GGTTTATGAGCAGTAGATGAAATGTTGGGGGTGAGAGGGTTCATAATGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTATGAGCAGTAGATGAAATGTTGGGGGTGAGAGGGTTCATAATGTA  700

seq1  GTAAT-AAAGCATTTGAGGGCTTTTAAGG-CCCTCAAGAAAGCATTTCAA  748
      ||||| ||||||||||||||||||| ||| ||||||||||| ||||||||
seq2  GTAATAAAAGCATTTGAGGGCTTTTTAGGCCCCTCAAGAAATCATTTCAA  750

seq1  GGGCTAC-TTGAA-GTTGTCTTCGCCTTGCTAGCTA-CCTAACC-TTTGT  794
      ||||||| |||||  ||||||||||||||||||||| ||||||| |||||
seq2  GGGCTACTTTGAATTTTGTCTTCGCCTTGCTAGCTACCCTAACCTTTTGT  800

seq1  CAATA--TTCTGA-AAAAAACATACATAC--TTAAGG-CTAAAAGC  834
      |||||  |||||| |||||| ||||||||  |||||| ||||||||
seq2  CAATAATTTCTGAGAAAAAATATACATACCTTTAAGGTCTAAAAGC  846


seq1: chr6_138505763_138505909
seq2: B6Ng01-195J10.g_546_683 (reverse)

seq1  GCAAACTTTATATGCCCCAGTACAGGGGAATGCCTGGGCCAAAAAAAATG  50
      |||||||||||||||||||||||||||||| ||| |||||  ||||| ||
seq2  GCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCC--AAAAAGTG  48

seq1  GAAATGGGTGGGTAGGGAAGTGTGTGTGGGGGGGAGAGTATGGGGGACTT  100
      | | ||||||||||||  |||| | ||| ||| |         |||||||
seq2  GGAGTGGGTGGGTAGGAGAGTGAGGGTGAGGGTG-------TTGGGACTT  91

seq1  TGGGGATAGCATTGGAAATGTAATTGAGGAAAATACGTAATAAAAAA  147
      | | || ||||||||||||||||||||||||||||| |||| |||||
seq2  TTGCGACAGCATTGGAAATGTAATTGAGGAAAATACCTAATTAAAAA  138


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