BAC Information

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BAC

Clone NameB6Ng01-195L20
Chromosome1 (Build37)
Map Location 172,935,075 - 173,007,471
singlet/doubletdoublet
Overlap geneFcgr4, Fcgr3
Upstream geneDdr2, LOC100040571, Uap1, Uhmk1, Sh2d1b2, EG622708, Sh2d1b1, EG665574, 1700015E13Rik, Nos1ap, LOC100040002, LOC640532, Olfml2b, Atf6, Dusp12, Fcrlb, Fcrla, LOC100040778, Fcgr2b
Downstream gene1700009P17Rik, Sdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna, Cd244, Ly9, Slamf7, Cd48, LOC100041098, Slamf1, Cd84, Slamf6, Vangl2, LOC100040199, Nhlh1, Ncstn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-195L20.bB6Ng01-195L20.g
ACCGA018074GA018075
length1,093482
definitionB6Ng01-195L20.b B6Ng01-195L20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(173,006,658 - 173,007,471)(172,935,075 - 172,935,562)
sequence
gaattccagtatgctcctgacatctagaagaaaggtaacagcgaaatcat
tgtttttcacggtgtcttgggtagacaacagaagggagatttgttctcag
aaaggcctttgacttggaaacaatctttgcagaaaactgagatggtcttc
tctcatctaagcggttcttttggggaagaagccttacagccttggagcca
gttctgggtcacaagacagtcttggtgcacccagaatgccttgcatgatt
aaagaaagtaatccgattagtcacaaatgagtgtccacttcaagcatccg
tagtgatttctttcatttaacacagacacagacacagacacagacacaca
cacacacacacacacacacacacacacattaatcttttatgtatacccat
atatatgaacatataaccacacatgatatgtatacgtatgtatctatatc
tatctattaatacacatacatacagaaacacacacacacacacacacaaa
cacacatgggcgcgcactgatgactgtacccagtaaggacaaatgttgca
gggacctgctgttttccttcatgaactctacacacaaggctagggatttt
gtgaccaggaggaaagtgctttagcctcctctgccaaggaaaaagaagaa
atccaacgagttttgtgtagcgatcaagaaatatgctgttgtgtgggagg
gttaggttccagggagggttaggtcactgaggcacgacttctctgctgcc
tgcaaggcagcatattttggtatatccatcttggagtgaccctctttctc
tgctcagaacactgacagacctgagctgtgaggaaagcaggtgggagcaa
gcctgtagggagaagccctctgtttgctggtttctgcatcactttccttc
ctctgtgcttctttactggggattccctcctggagggactttttgagcca
agccttaatttaaaggtgaaatgaaacaagcactttccttgtcaaaggtt
gcttttggggtttatggtgttttgaccccccatgaacagaaaactctaag
cttcagacagaattggttaccaggaagtgggggttattgctgg
cacttttataacaatttttacatgttaaaggttttgtctgtccaacatcc
cctaaagaccttcatttggattttcaggaaggaaaaactaccactttcta
cagtgtcgtggggtagaaacagtatacccagctccctactatctcatcca
cagctccctgataaactcgattaatcttttagaaaccttgactcaggtca
gttgggtactcagtgctttggcctagacaagaatttcagggctagtcggt
gtgaagcagagccggagtctaataaaaaaaaaaaaaaagcatagatttca
gcacgagagttcagaggaagtggggagacatagaagcaacaagacacacc
taaaagcaagagtatgggttgtctgagagttttcccacactttcacaaca
ttcaaatacaccgttttggtggattttgaagttaccatctgaaaggtctg
ctaagggatgtaaacaaggggggagggggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_173006658_173007471
seq2: B6Ng01-195L20.b_303_1139 (reverse)

seq1  CCAGCAATA--CCCCAC-TCCTGGTACCAATTTCTGTCTG-AGC-TAGAG  45
      |||||||||  |||||| |||||||| | | ||||||||| ||| |||||
seq2  CCAGCAATAACCCCCACTTCCTGGTAACCAATTCTGTCTGAAGCTTAGAG  50

seq1  -TTTCTGTTC-TTGGGGGTC-AAACACCATAA---CCCAAAGCAACC-TT  88
       ||||||||| | ||||||| |||||||||||   || ||||||||| ||
seq2  TTTTCTGTTCATGGGGGGTCAAAACACCATAAACCCCAAAAGCAACCTTT  100

seq1  GACAAGG-AAGTGCTTGTTTCA-TTCACCTT--AATTAAGGC-TGGCTC-  132
      ||||||| |||||||||||||| ||||||||  ||||||||| |||||| 
seq2  GACAAGGAAAGTGCTTGTTTCATTTCACCTTTAAATTAAGGCTTGGCTCA  150

seq1  AGAAGTCCCTCCAGGAGGGAATCCCCAGT-AAGGAGCACAGAGGAAGG-A  180
      | ||||||||||||||||||||||||||| ||| |||||||||||||| |
seq2  AAAAGTCCCTCCAGGAGGGAATCCCCAGTAAAGAAGCACAGAGGAAGGAA  200

seq1  AGTGATGCAGAAACCAGC-AACAGAGGGCTTCTCCCTACAGGCTTGCT-C  228
      |||||||||||||||||| ||||||||||||||||||||||||||||| |
seq2  AGTGATGCAGAAACCAGCAAACAGAGGGCTTCTCCCTACAGGCTTGCTCC  250

seq1  CACCTGCTTTCCTCACAGCTCAGGTCTGTCAGTGTTCTGAGCAGAGAAAG  278
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGCTTTCCTCACAGCTCAGGTCTGTCAGTGTTCTGAGCAGAGAAAG  300

seq1  AGGGTCACTCCAAGATGGATATACC-AAATATGCTGCCTTGCAGGCAGCA  327
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AGGGTCACTCCAAGATGGATATACCAAAATATGCTGCCTTGCAGGCAGCA  350

seq1  GAGAAGTCGTGCCTCAGTGACCTAACCCTCCCTGGAACCTAACCCTCCCA  377
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGTCGTGCCTCAGTGACCTAACCCTCCCTGGAACCTAACCCTCCCA  400

seq1  CACAACAGCATATTTCTTGATCGCTACACAAAACTCGTTGGATTTCTTCT  427
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACAGCATATTTCTTGATCGCTACACAAAACTCGTTGGATTTCTTCT  450

seq1  TTTTCCTTGGCAGAGGAGGCTAAAGCACTTTCCTCCTGGTCACAAAATCC  477
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTTGGCAGAGGAGGCTAAAGCACTTTCCTCCTGGTCACAAAATCC  500

seq1  CTAGCCTTGTGTGTAGAGTTCATGAAGGAAAACAGCAGGTCCCTGCAACA  527
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCTTGTGTGTAGAGTTCATGAAGGAAAACAGCAGGTCCCTGCAACA  550

seq1  TTTGTCCTTACTGGGTACAGTCATCAGTGCGCGCCCATGTGTGTTTGTGT  577
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCCTTACTGGGTACAGTCATCAGTGCGCGCCCATGTGTGTTTGTGT  600

seq1  GTGTGTGTGTGTGTGTTTCTGTATGTATGTGTATTAATAGATAGATATAG  627
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTTTCTGTATGTATGTGTATTAATAGATAGATATAG  650

seq1  ATACATACGTATACATATCATGTGTGGTTATATGTTCATATATATGGGTA  677
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATACGTATACATATCATGTGTGGTTATATGTTCATATATATGGGTA  700

seq1  TACATAAAAGATTAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  727
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAAAAGATTAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  750

seq1  CTGTGTCTGTGTCTGTGTCTGTGTTAAATGAAAGAAATCACTACGGATGC  777
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTCTGTGTCTGTGTCTGTGTTAAATGAAAGAAATCACTACGGATGC  800

seq1  TTGAAGTGGACACTCATTTGTGACTAATCGGATTACT  814
      |||||||||||||||||||||||||||||||||||||
seq2  TTGAAGTGGACACTCATTTGTGACTAATCGGATTACT  837

seq1: chr1_172935075_172935562
seq2: B6Ng01-195L20.g_68_555

seq1  GAATTCCACTTTTATAACAATTTTTACATGTTAAAGGTTTTGTCTGTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTTTTATAACAATTTTTACATGTTAAAGGTTTTGTCTGTCCA  50

seq1  ACATCCCCTAAAGACCTTCATTTGGATTTTCAGGAAGGAAAAACTACCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCCCTAAAGACCTTCATTTGGATTTTCAGGAAGGAAAAACTACCAC  100

seq1  TTTCTACAGTGTCGTGGGGTAGAAACAGTATACCCAGCTCCCTACTATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTACAGTGTCGTGGGGTAGAAACAGTATACCCAGCTCCCTACTATCT  150

seq1  CATCCACAGCTCCCTGATAAACTCGATTAATCTTTTAGAAACCTTGACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCACAGCTCCCTGATAAACTCGATTAATCTTTTAGAAACCTTGACTC  200

seq1  AGGTCAGTTGGGTACTCAGTGCTTTGGCCTAGACAAGAATTTCAGGGCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAGTTGGGTACTCAGTGCTTTGGCCTAGACAAGAATTTCAGGGCTA  250

seq1  GTCGGTGTGAAGCAGAGCCGGAGTCTAATAAAAAAAAAAAAAAAGCATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGGTGTGAAGCAGAGCCGGAGTCTAATAAAAAAAAAAAAAAAGCATAG  300

seq1  ATTTCAGCACGAGAGTTCAGAGGAAGTGGGGAGACATAGAAGCAACAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGCACGAGAGTTCAGAGGAAGTGGGGAGACATAGAAGCAACAAGA  350

seq1  CACACCTAAAAGCAAGAGTATGGGTTGTCTGAGAGTTTTCCCACACTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCTAAAAGCAAGAGTATGGGTTGTCTGAGAGTTTTCCCACACTTTC  400

seq1  ACAACATTCAAATACACCGTTTTGGTGGATTTTGAAGTTACCATCTGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACATTCAAATACACCGTTTTGGTGGATTTTGAAGTTACCATCTGAAA  450

seq1  GGTCTGCTAAGGGATGTAAACAAGGGGGGAGGGGGAGG  488
      ||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGCTAAGGGATGTAAACAAGGGGGGAGGGGGAGG  488