BAC Information

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BAC

Clone NameB6Ng01-195O03
Chromosome1 (Build37)
Map Location 185,666,656 - 185,806,596
singlet/doubletdoublet
Overlap genenone
Upstream gene4922505E12Rik, Susd4, Tlr5, EG666649
Downstream gene1700056E22Rik, Dusp10, EG433387, EG629032, LOC666714, Hlx1, Mosc1, Mosc2, LOC100039079, C130074G19Rik, Mark1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-195O03.bB6Ng01-195O03.g
ACCGA018179GA018180
length1,0661,045
definitionB6Ng01-195O03.b B6Ng01-195O03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(185,666,656 - 185,667,676)(185,805,551 - 185,806,596)
sequence
gaattcttagtctttttaaatattatgataatgcatttataacacttaat
caccaatactatctcaatcaatgttatgtgataaataattagaagaaata
aaatataactatcttccctaatatatcaacatatgcacaaatacattctc
cacaaagtaggacagaagccaacatgtcaactataacactagtttctgca
actagttatgcggtcttagcaagtattcttagctaattttctctattatc
cattctgcaccttgtcctcctcagtccttccctcctttccttcttccctc
tcttcctttcttcctcccttctttcttttttccctctttctgtctgtgtg
cttgtgtatatgtgtttctgtgtgcttatatgtgtgtttgtttatgtgta
tgggtgtatgtacatttgtgtgtgtacacgtgcgccaaggcacagctcta
gaagactggatacttgctgaagtcgttcttttccttcaaccatgtgtgtt
ttctgggttgaaaccatgcaatcagtcttggcagggagccttcgcactgc
tcattttttgttcaaaaacatttattttcagcaccttattgatactagat
tctcatatgaaccaaaagtacaatagcgggtgagtcataaatttgttttg
agttaaagacatgatgggctttaggcagtatggagtaatgcagaaaatac
tgagttggggagtcaggcaataggcttactaatattagtcatggacaata
caagtgacctaaagatgcccctgggaagcttgagatacagataatatcag
gaaaactgggacttcagtgcatgtgggttgcttcatttggttttcctgtc
ctacgagcacatggtgcaaggacaactggcctaacgtggacgttgaaggt
ggttttgcttctctttatgaagcagactgttctgactctgcctttgggtt
tacagtgcaacttgtcttggaagtccggtacttatgacaagcatttcaat
tttctcaagggatctcaacagccaatatctagagacgtctttggcttatc
aaaattgtgaagaggg

gaattcattcccacttatccttccctttcaagattccgactctgtcaaca
tttcctgttagtgaagtcacccttcacgtcctcatctccttattgattta
caattttctaccctcattttcagaatatttcagaaggaagggacataaat
atttacactgaatgcaatacatttaacaggaagtcctgtggctatttata
tatctttctctattcatcagtatcattgggcacagatgtctcatcgaagg
gctttgagcacttggagaagttaacttggcgagggagacggccatgatgt
cgcttgtgtttacctgacctagccaggagctgggacacgtgactgctccc
tctcccctgattagcctcactgtgcaggaagatgcgaagagagcaagcgt
cgggcacaatatgccaatttctcgataatagaatgttctgcttgcatagg
aaggaaactgcagctgttcggtacagatggcgaatagctgactgcatcta
gcaggattcaatgaactgtggcaagtgaggaggcacgtggaaagagagga
gatgtgtaaactagttcctgcttccatgcaggaaaaaattccccggataa
ttaacatttatttagatgtttttaaaaaggaaaatgtctcctaagccact
cctcaaaagtcaattccctaaatactgtgtccccaaatgcactcggattt
gcctcagatgaattagatttttcaggattgattttgtaccacctgttcca
aagtttttcgcactgactgcagaaagcaataaggtcagaggtctgcgtgt
atttgtgtgtgtgtgttgacatgtgtgtgcatgatatttactattttgga
tgtgttcattttgtttccagatcttcaaaattagaagtttaacattgggg
acaatgatgttgttttaaaatttttctgttttctgcgtcacctttcctat
ctcccttctaaatgtacagtaaaacgttcataaaaacttactagcttaat
ggtgacctacttatcaaaaaggatttcctaaccctcaccccacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_185666656_185667676
seq2: B6Ng01-195O03.b_94_1109

seq1  CACCAATACTATCTCAATCAATGTTATGTGATAAATAATTAGAAGAAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAATACTATCTCAATCAATGTTATGTGATAAATAATTAGAAGAAATA  50

seq1  AAATATAACTATCTTCCCTAATATATCAACATATGCACAAATACATTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATAACTATCTTCCCTAATATATCAACATATGCACAAATACATTCTC  100

seq1  CACAAAGTAGGACAGAAGCCAACATGTCAACTATAACACTAGTTTCTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAGTAGGACAGAAGCCAACATGTCAACTATAACACTAGTTTCTGCA  150

seq1  ACTAGTTATGCGGTCTTAGCAAGTATTCTTAGCTAATTTTCTCTATTATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTTATGCGGTCTTAGCAAGTATTCTTAGCTAATTTTCTCTATTATC  200

seq1  CATTCTGCACCTTGTCCTCCTCAGTCCTTCCCTCCTTTCCTTCTTCCCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTGCACCTTGTCCTCCTCAGTCCTTCCCTCCTTTCCTTCTTCCCTC  250

seq1  TCTTCCTTTCTTCCTCCCTTCTTTCTTTTTTCCCTCTTTCTGTCTGTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTTTCTTCCTCCCTTCTTTCTTTTTTCCCTCTTTCTGTCTGTGTG  300

seq1  CTTGTGTATATGTGTTTCTGTGTGCTTATATGTGTGTTTGTTTATGTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGTATATGTGTTTCTGTGTGCTTATATGTGTGTTTGTTTATGTGTA  350

seq1  TGGGTGTATGTACATTTGTGTGTGTACACGTGCGCCAAGGCACAGCTCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGTATGTACATTTGTGTGTGTACACGTGCGCCAAGGCACAGCTCTA  400

seq1  GAAGACTGGATACTTGCTGAAGTCGTTCTTTTCCTTCAACCATGTGTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACTGGATACTTGCTGAAGTCGTTCTTTTCCTTCAACCATGTGTGTT  450

seq1  TTCTGGGTTGAAACCATGCAATCAGTCTTGGCAGGGAGCCTTCGCACTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGGTTGAAACCATGCAATCAGTCTTGGCAGGGAGCCTTCGCACTGC  500

seq1  TCATTTTTTGTTCAAAAACATTTATTTTCAGCACCTTATTGATACTAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTTTGTTCAAAAACATTTATTTTCAGCACCTTATTGATACTAGAT  550

seq1  TCTCATATGAACCAAAAGTACAATAGCGGGTGAGTCATAAATTTGTTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATATGAACCAAAAGTACAATAGCGGGTGAGTCATAAATTTGTTTTG  600

seq1  AGTTAAAGACATGATGGGCTTTAGGCAGTATGGAGTAATGCAGAAAATAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAAGACATGATGGGCTTTAGGCAGTATGGAGTAATGCAGAAAATAC  650

seq1  TGAGTTGGGGAGTCAGGCAATAGGCTTACTAATATTAGTCATGGACAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTGGGGAGTCAGGCAATAGGCTTACTAATATTAGTCATGGACAATA  700

seq1  CAAGTGACCTAAAGATGCCCCTGGGAAGCTTGAGATACAGATAATATCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGACCTAAAGATGCCCCTGGGAAGCTTGAGATACAGATAATATCAG  750

seq1  GAAAACTGGGACTTCAGTGCATGTGGGTTGCTTCATTTGGTTTTCCTGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACTGGGACTTCAGTGCATGTGGGTTGCTTCATTTGGTTTTCCTGTC  800

seq1  CTACGAGCACATGGTGCAAGGACAACTGGCCTAACGTGGACGTTGAAGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACGAGCACATGGTGCAAGGACAACTGGCCTAACGTGGACGTTGAAGGT  850

seq1  GG-TTTGCTTCTCTTTATGAAGCAGGACTGTTCTGACTCTGCCTTTGGGT  899
      || ||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GGTTTTGCTTCTCTTTATGAAGCA-GACTGTTCTGACTCTGCCTTTGGGT  899

seq1  TTACAGTGCAACTTGTCTTGGAAGTCCGTTACTTATGACAAGCATTTCAA  949
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTACAGTGCAACTTGTCTTGGAAGTCCGGTACTTATGACAAGCATTTCAA  949

seq1  TTTTCTCAAGGGATCTCAACAGCCAATATCTAGAGACGTCTTT-GCTTAT  998
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTTTCTCAAGGGATCTCAACAGCCAATATCTAGAGACGTCTTTGGCTTAT  999

seq1  CAAAATGGTGAGGGGGGAGAGGG  1021
      |||||| ||||      ||||||
seq2  CAAAATTGTGA------AGAGGG  1016


seq1: chr1_185805551_185806596
seq2: B6Ng01-195O03.g_64_1108 (reverse)

seq1  TGGTGGGGTGAGGGTTAGGAATTCCTTTTTGATAAGTTAGTTCACCATTA  50
      ||||||||||||||||||||| |||||||||||||| ||| |||||||||
seq2  TGGTGGGGTGAGGGTTAGGAAATCCTTTTTGATAAG-TAGGTCACCATTA  49

seq1  AGCTAGTAAGTTTTTATGAACGTTTTTACTGTACATTTAGAAGGGAGATA  100
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AGCTAGTAAGTTTTTATGAACG-TTTTACTGTACATTTAGAAGGGAGATA  98

seq1  GG-AAGGTGACGCAGAAAACAGAAAAATTTTAAAACAACATCATTGTCCC  149
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGTGACGCAGAAAACAGAAAAATTTTAAAACAACATCATTGTCCC  148

seq1  CAATGTTAAACTTCTAATTTTGAAGATCTGGAAACAAAATGAACACATCC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTTAAACTTCTAATTTTGAAGATCTGGAAACAAAATGAACACATCC  198

seq1  AAAATAGTAAATATCATGCACACACATGTCAACACACACACACAAATACA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGTAAATATCATGCACACACATGTCAACACACACACACAAATACA  248

seq1  CGCAGACCTCTGACCTTATTGCTTTCTGCAGTCAGTGCGAAAAACTTTGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGACCTCTGACCTTATTGCTTTCTGCAGTCAGTGCGAAAAACTTTGG  298

seq1  AACAGGTGGTACAAAATCAATCCTGAAAAATCTAATTCATCTGAGGCAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGTGGTACAAAATCAATCCTGAAAAATCTAATTCATCTGAGGCAAA  348

seq1  TCCGAGTGCATTTGGGGACACAGTATTTAGGGAATTGACTTTTGAGGAGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGAGTGCATTTGGGGACACAGTATTTAGGGAATTGACTTTTGAGGAGT  398

seq1  GGCTTAGGAGACATTTTCCTTTTTAAAAACATCTAAATAAATGTTAATTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTAGGAGACATTTTCCTTTTTAAAAACATCTAAATAAATGTTAATTA  448

seq1  TCCGGGGAATTTTTTCCTGCATGGAAGCAGGAACTAGTTTACACATCTCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGGGAATTTTTTCCTGCATGGAAGCAGGAACTAGTTTACACATCTCC  498

seq1  TCTCTTTCCACGTGCCTCCTCACTTGCCACAGTTCATTGAATCCTGCTAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTCCACGTGCCTCCTCACTTGCCACAGTTCATTGAATCCTGCTAG  548

seq1  ATGCAGTCAGCTATTCGCCATCTGTACCGAACAGCTGCAGTTTCCTTCCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGTCAGCTATTCGCCATCTGTACCGAACAGCTGCAGTTTCCTTCCT  598

seq1  ATGCAAGCAGAACATTCTATTATCGAGAAATTGGCATATTGTGCCCGACG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAGCAGAACATTCTATTATCGAGAAATTGGCATATTGTGCCCGACG  648

seq1  CTTGCTCTCTTCGCATCTTCCTGCACAGTGAGGCTAATCAGGGGAGAGGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTCTCTTCGCATCTTCCTGCACAGTGAGGCTAATCAGGGGAGAGGG  698

seq1  AGCAGTCACGTGTCCCAGCTCCTGGCTAGGTCAGGTAAACACAAGCGACA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTCACGTGTCCCAGCTCCTGGCTAGGTCAGGTAAACACAAGCGACA  748

seq1  TCATGGCCGTCTCCCTCGCCAAGTTAACTTCTCCAAGTGCTCAAAGCCCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGCCGTCTCCCTCGCCAAGTTAACTTCTCCAAGTGCTCAAAGCCCT  798

seq1  TCGATGAGACATCTGTGCCCAATGATACTGATGAATAGAGAAAGATATAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGATGAGACATCTGTGCCCAATGATACTGATGAATAGAGAAAGATATAT  848

seq1  AAATAGCCACAGGACTTCCTGTTAAATGTATTGCATTCAGTGTAAATATT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGCCACAGGACTTCCTGTTAAATGTATTGCATTCAGTGTAAATATT  898

seq1  TATGTCCCTTCCTTCTGAAATATTCTGAAAATGAGGGTAGAAAATTGTAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCCCTTCCTTCTGAAATATTCTGAAAATGAGGGTAGAAAATTGTAA  948

seq1  ATCAATAAGGAGATGAGGACGTGAAGGGTGACTTCACTAACAGGAAATGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATAAGGAGATGAGGACGTGAAGGGTGACTTCACTAACAGGAAATGT  998

seq1  TGACAGAGTCGGAATCTTGAAAGGGAAGGATAAGTGGGAATGAATTC  1046
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGAGTCGGAATCTTGAAAGGGAAGGATAAGTGGGAATGAATTC  1045


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