BAC Information

Click to search

BAC

Clone NameB6Ng01-196B21
Chromosome1 (Build37)
Map Location 110,269,159 - 110,398,974
singlet/doubletdoublet
Overlap geneLOC435640
Upstream geneSerpinb11, Serpinb7, Serpinb2, Serpinb10, Serpinb8
Downstream geneEG626474
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-196B21.bB6Ng01-196B21.g
ACCGA018344GA018345
length1,161490
definitionB6Ng01-196B21.b B6Ng01-196B21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,269,159 - 110,270,318)(110,398,482 - 110,398,974)
sequence
gaattctcatcagaggtcagatgtttttaatgactgcacaagacttcatg
tttgctttcacaaagccatgacttcttttgaacctttatattgttagaga
attttatacatacaagttttgataaaatctaccacttcatttatgtttgt
tcagcttttatcacaacctatccaccccaaatttatgtgctgtgttgttt
aaactcatcatgtcttttttgtgccatcagtatgtgcgtgaatgtaaagt
gatctgctatatcatgggtattttttgagtttctgcatctctgaagaaca
ttttataaattcttgtacttcttatggagatctgaaataaccaatgacaa
ggttacttctcctgtaactccggtaagaacaggtgacctttagtccttgt
ttcactagactacatcatctggagtcatcatcttaaaatagctctccagc
tggttgtgggatttggaagtcaatcatccattcatgtttggatactggct
aaattgaccttgcataggtcttgtgtgtcactccctctgtgagctcatgg
atgcaaggactttgccatgtctcaaaaatattgatttgctgtagtcattc
agtaccccagtatcttatgatatttaagaactctcataagagatgaacct
tgatccttgagaaggtgagtataatatagtagatctatttaaaaaggaac
ctcaaagtctctgatgttaggcatcataatatctctgtatcagtcacaac
ctattgcaaaaagaagctttttatgatgaaggttataactgtgagtgcat
aaataagtacatatgtggttatctgatattgtgtctatttagcagaataa
tagtaacatattcatctctagttcctataatatagagttctcattacatc
tttcataactccatcttcatcacttgaagtctgaaaaaattattttattt
tatattaatgtatacaattaaataaagccttatgttattgaggttagcag
aagttacaggatctagatcagaaaataaaagatagtttattgctgaaaac
ataatacaattattttgtctcataattgagctcagatgctagagcaaatg
tgatcagaattagagcattgttcttttcctactcacaccacagaaacggc
taaatagctgg

aacagtattttgtagatattttgtctcatattgttttgtttggatttttg
gaaggtcttattggtcccatggatatttattattgtttctgattttgcat
ttttatgtgttttgtttgtctcttagggcctgtatttagagctgtgtggg
tgaggaggaggatctgggtgaaattgagagaggaaaaagattgatcatca
tatattgtatagaagcatttccataaagggtgcacacaatttgtgtgcgt
gtgtgtttgtgtgtgtgtgaaaaccagagcattaaatatacaaagtaaac
aaaaattttcaaatagaatgtatgattacagatagccagtgcatatagag
ctattcttcgcagtattctggatgataatggagtctccagggatggttgc
ctaaagaatcaatattcatttctgcatgaaggattatcactcttacttga
aggatgggtattttcttttttcacatctctttgataccag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_110269159_110270318
seq2: B6Ng01-196B21.b_47_1207

seq1  GAATTCTCATCAGAGGTCAGATGTTTTTAATGACTGCACAAGACTTCATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATCAGAGGTCAGATGTTTTTAATGACTGCACAAGACTTCATG  50

seq1  TTTGCTTTCACAAAGCCATGACTTCTTTTGAACCTTTATATTGTTAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTTCACAAAGCCATGACTTCTTTTGAACCTTTATATTGTTAGAGA  100

seq1  ATTTTATACATACAAGTTTTGATAAAATCTACCACTTCATTTATGTTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATACATACAAGTTTTGATAAAATCTACCACTTCATTTATGTTTGT  150

seq1  TCAGCTTTTATCACAACCTATCCACCCCAAATTTATGTGCTGTGTTGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTTTTATCACAACCTATCCACCCCAAATTTATGTGCTGTGTTGTTT  200

seq1  AAACTCATCATGTCTTTTTTGTGCCATCAGTATGTGCGTGAATGTAAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCATCATGTCTTTTTTGTGCCATCAGTATGTGCGTGAATGTAAAGT  250

seq1  GATCTGCTATATCATGGGTATTTTTTGAGTTTCTGCATCTCTGAAGAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGCTATATCATGGGTATTTTTTGAGTTTCTGCATCTCTGAAGAACA  300

seq1  TTTTATAAATTCTTGTACTTCTTATGGAGATCTGAAATAACCAATGACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATAAATTCTTGTACTTCTTATGGAGATCTGAAATAACCAATGACAA  350

seq1  GGTTACTTCTCCTGTAACTCCGGTAAGAACAGGTGACCTTTAGTCCTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTACTTCTCCTGTAACTCCGGTAAGAACAGGTGACCTTTAGTCCTTGT  400

seq1  TTCACTAGACTACATCATCTGGAGTCATCATCTTAAAATAGCTCTCCAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTAGACTACATCATCTGGAGTCATCATCTTAAAATAGCTCTCCAGC  450

seq1  TGGTTGTGGGATTTGGAAGTCAATCATCCATTCATGTTTGGATACTGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGTGGGATTTGGAAGTCAATCATCCATTCATGTTTGGATACTGGCT  500

seq1  AAATTGACCTTGCATAGGTCTTGTGTGTCACTCCCTCTGTGAGCTCATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGACCTTGCATAGGTCTTGTGTGTCACTCCCTCTGTGAGCTCATGG  550

seq1  ATGCAAGGACTTTGCCATGTCTCAAAAATATTGATTTGCTGTAGTCATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAGGACTTTGCCATGTCTCAAAAATATTGATTTGCTGTAGTCATTC  600

seq1  AGTACCCCAGTATCTTATGATATTTAAGAACTCTCATAAGAGATGAACCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCCCAGTATCTTATGATATTTAAGAACTCTCATAAGAGATGAACCT  650

seq1  TGATCCTTGAGAAGGTGAGTATAATATAGTAGATCTATTTAAAAAGGAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCTTGAGAAGGTGAGTATAATATAGTAGATCTATTTAAAAAGGAAC  700

seq1  CTCAAAGTCTCTGATGTTAGGCATCATAATATCTCTGTATCAGTCACAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAGTCTCTGATGTTAGGCATCATAATATCTCTGTATCAGTCACAAC  750

seq1  CTATTGCAAAAAGAAGCTTTTTATGATGAAGGTTATAACTGTGAGTGCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGCAAAAAGAAGCTTTTTATGATGAAGGTTATAACTGTGAGTGCAT  800

seq1  AAATAAGTACATATGTGGTTATCTGATATTGTGTCTATTTAGCAGAATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGTACATATGTGGTTATCTGATATTGTGTCTATTTAGCAGAATAA  850

seq1  TAGTAACATATTCATCTCTAGTTCCTATAATATAGAGTTCTCATTACATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAACATATTCATCTCTAGTTCCTATAATATAGAGTTCTCATTACATC  900

seq1  TTTCATAACTCCATCTTCATCACTTGAAGTCTGAAAAAATTATTTTATTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATAACTCCATCTTCATCACTTGAAGTCTGAAAAAATTATTTTATTT  950

seq1  TATATTAATGTATACAATT-AATAAAGCCTTATGTTATTGAGGTTAGCAG  999
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TATATTAATGTATACAATTAAATAAAGCCTTATGTTATTGAGGTTAGCAG  1000

seq1  AAGTTACAGGATCTAGATCAGAAAATAAAAGATAGTTTATTGCTTGAAAA  1049
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AAGTTACAGGATCTAGATCAGAAAATAAAAGATAGTTTATTGC-TGAAAA  1049

seq1  CATAATACAAT--ATTTGTCTCCATAATTGAGGCTCAGATGCTAGAAGCA  1097
      |||||||||||   ||||||| ||||||||| ||||||||||||| ||||
seq2  CATAATACAATTATTTTGTCT-CATAATTGA-GCTCAGATGCTAG-AGCA  1096

seq1  AATGTGATCAAGAATAGAGCAT--GTCTTTCCTAACTCACACCACAG-AA  1144
      ||||||||||  | ||||||||   ||||| |  ||||||||||||| ||
seq2  AATGTGATCAGAATTAGAGCATTGTTCTTTTCCTACTCACACCACAGAAA  1146

seq1  CAGCTAAAATAGCTGG  1160
      | ||| ||||||||||
seq2  CGGCT-AAATAGCTGG  1161


seq1: chr1_110398482_110398974
seq2: B6Ng01-196B21.g_63_557 (reverse)

seq1  TGGTATCAAAGAGATGTG-AAAAAGAAACTACCCATCCTTCAAGTAAGAG  49
      |||||||||||||||||| ||||||||| |||||||||||||||||||||
seq2  TGGTATCAAAGAGATGTGAAAAAAGAAAATACCCATCCTTCAAGTAAGAG  50

seq1  TGATAATCCTTCATGCTGCTGTGAATATTGCTTCTCTAGGCAACCATCCC  99
      |||||||||||||||| |   ||||||||| |||| ||||||||||||||
seq2  TGATAATCCTTCATGCAGAAATGAATATTGATTCTTTAGGCAACCATCCC  100

seq1  TGGAGACTCCATTATCATCCAGAATACTGCGAAGAATAGCTCTATATGCA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGACTCCATTATCATCCAGAATACTGCGAAGAATAGCTCTATATGCA  150

seq1  CTGGCTATCTGTAATCATACATTCTATTTG-AAATTTTTGTTTACTTTGT  198
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CTGGCTATCTGTAATCATACATTCTATTTGAAAATTTTTGTTTACTTTGT  200

seq1  ATATTTAATGCTCTGGTTTTCACACACACACAAACACACACGCACACAAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTAATGCTCTGGTTTTCACACACACACAAACACACACGCACACAAA  250

seq1  TTGTGTGCACCCTTTATGGAAATGCTTCTATACAATATATGATGATCAAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGCACCCTTTATGGAAATGCTTCTATACAATATATGATGATCAAT  300

seq1  CTTTTTCCTCTCTCAATTTCACCCAGATCCTCCTCCTCACCCACACAGCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCCTCTCTCAATTTCACCCAGATCCTCCTCCTCACCCACACAGCT  350

seq1  CTAAATACAGGCCCTAAGAGACAAACAAAACACATAAAAATGCAAAATCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATACAGGCCCTAAGAGACAAACAAAACACATAAAAATGCAAAATCA  400

seq1  GAAACAATAATAAATATCCATGGGACCAATAAGACCTTCCAAAAATCCAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAATAATAAATATCCATGGGACCAATAAGACCTTCCAAAAATCCAA  450

seq1  ACAAAACAATATGAGACAAAATATCTACAAAATACTGTTGAATTC  493
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACAATATGAGACAAAATATCTACAAAATACTGTTGAATTC  495


| Home | SequenceCutter | Blast | Download |