BAC Information

Click to search

BAC

Clone NameB6Ng01-196B22
Chromosome1 (Build37)
Map Location 191,010,437 - 191,123,164
singlet/doubletdoublet
Overlap geneKcnk2, LOC100042424
Upstream geneEsrrg, Ush2a, Kctd3
Downstream geneLOC100039307, Cenpf, Ptpn14, LOC100042438, Smyd2, Prox1
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-196B22.bB6Ng01-196B22.g
ACCGA018346GA018347
length217413
definitionB6Ng01-196B22.b B6Ng01-196B22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(191,122,948 - 191,123,164)(191,010,437 - 191,010,855)
sequence
tctaaaagtgatcatataggcctgtgcggaatacagaacaataccccagg
tgtgtttccttgatgcaataaagatttaagctgtggccatgataggaatg
ttaggcttttatgggactgttctttttcctttttatagatcttctgtatt
ttaaatatgtgaatgtttgatttgtgtgggatgagagtctgtgtaagaga
gaggggagaagaggggg

cccaaagtgcccaactgtacacagtgccgccaggcacagagcaattgaaa
gtgtctagcacctcctttccccaggttcatactagtctcttggttggact
ctaatgcaaatgtagatatgagcagtaggttgagtgcagggtaagtctga
agtagcagggctcagcatgaagaagcctctgcagatctttggtggcatcc
accatagaaagtgtcaaaatggacctcagcctagaaccacggagaggcct
taaacagatctgagctgctgatgccacaccacgtgtgggactgtgatgtt
aaaagtctacggttcagataaattaataaaacatctatatgcagttagtg
aggcataaaaaggagagaagaaaaattcttattaccttactagcagctaa
acggggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_191122948_191123164
seq2: B6Ng01-196B22.b_51_267 (reverse)

seq1  CCCCCTCTTCTCCCCTCTCTCTTACACAGACTCTCATCCCACACAAATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTCTTCTCCCCTCTCTCTTACACAGACTCTCATCCCACACAAATCA  50

seq1  AACATTCACATATTTAAAATACAGAAGATCTATAAAAAGGAAAAAGAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTCACATATTTAAAATACAGAAGATCTATAAAAAGGAAAAAGAACA  100

seq1  GTCCCATAAAAGCCTAACATTCCTATCATGGCCACAGCTTAAATCTTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCATAAAAGCCTAACATTCCTATCATGGCCACAGCTTAAATCTTTAT  150

seq1  TGCATCAAGGAAACACACCTGGGGTATTGTTCTGTATTCCGCACAGGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCAAGGAAACACACCTGGGGTATTGTTCTGTATTCCGCACAGGCCT  200

seq1  ATATGATCACTTTTAGA  217
      |||||||||||||||||
seq2  ATATGATCACTTTTAGA  217


seq1: chr1_191010437_191010855
seq2: B6Ng01-196B22.g_65_483

seq1  GAATTCCCCAAAGTGCCCAACTGTACACAGTGCCGCCAGGCACAGAGCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCAAAGTGCCCAACTGTACACAGTGCCGCCAGGCACAGAGCAA  50

seq1  TTGAAAGTGTCTAGCACCTCCTTTCCCCAGGTTCATACTAGTCTCTTGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGTGTCTAGCACCTCCTTTCCCCAGGTTCATACTAGTCTCTTGGT  100

seq1  TGGACTCTAATGCAAATGTAGATATGAGCAGTAGGTTGAGTGCAGGGTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTCTAATGCAAATGTAGATATGAGCAGTAGGTTGAGTGCAGGGTAA  150

seq1  GTCTGAAGTAGCAGGGCTCAGCATGAAGAAGCCTCTGCAGATCTTTGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAAGTAGCAGGGCTCAGCATGAAGAAGCCTCTGCAGATCTTTGGTG  200

seq1  GCATCCACCATAGAAAGTGTCAAAATGGACCTCAGCCTAGAACCACGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCACCATAGAAAGTGTCAAAATGGACCTCAGCCTAGAACCACGGAG  250

seq1  AGGCCTTAAACAGATCTGAGCTGCTGATGCCACACCACGTGTGGGACTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTTAAACAGATCTGAGCTGCTGATGCCACACCACGTGTGGGACTGT  300

seq1  GATGTTAAAAGTCTACGGTTCAGATAAATTAATAAAACATCTATATGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTAAAAGTCTACGGTTCAGATAAATTAATAAAACATCTATATGCAG  350

seq1  TTAGTGAGGCATAAAAAGGAGAGAAGAAAAATTCTTATTACCTTACTAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGAGGCATAAAAAGGAGAGAAGAAAAATTCTTATTACCTTACTAGC  400

seq1  AGCTAAACGGGGGGGGGGG  419
      |||||||||||||||||||
seq2  AGCTAAACGGGGGGGGGGG  419


| Home | SequenceCutter | Blast | Download |