BAC Information

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BAC

Clone NameB6Ng01-196D11
Chromosome1 (Build37)
Map Location 58,772,103 - 58,773,160
singlet/doubletsinglet
Overlap geneCflar
Upstream gene2810022L02Rik, Kctd18, Sgol2, Aox1, Aox3, Aox4, Aox3l1, EG628262, Bzw1, Clk1, Ppil3, Nif3l1, Orc2l, BC049806, Ndufb3, EG667397, Als2cr12
Downstream geneLOC100042431, Casp8, EG667419, Trak2, Als2cr2, 4930408G06Rik, EG667447, Als2cr11, Als2cr4, Mpp4, Als2, Als2cr7, Fzd7, Gm973, Sumo1, LOC100042476, Nol5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-196D11.bB6Ng01-196D11.g
ACCGA018413GA018414
length1,071955
definitionB6Ng01-196D11.b B6Ng01-196D11.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctccaaatcctcctcagcttcccaagcgcgaagattactgacatg
agctcctgcacccaggtctttcacagtttttgatctacatttaatacctc
agtttttatttacttatttgtttatttgatgtatgtgaataaaatgtagc
tgtcttcagacacaccagaagagggcattagatcccattacagatggttg
tgagccaccatgtggttgctgggaattgaactcaggacctctagaagaag
agcagtcagtgctcttaaccgatgagccatctctccagcccacctcagtt
tttcagtgtgattgaaaactccacttgctttaactactttcaaggtttag
tgtgctttgaagtaagtgacttccttcaaagatcttgttttacaagtggg
aaccagagcttcatggacctgtgaaatgttccatgtttaaaagtccccct
ttgccttatatttctgtgatcttttaaaaaatactttttttctcttgtag
ctttagtttttggttttgtttgagactgagtctcctggagcctgggccaa
ccttgaactcctggtcctctctgttaccttagttatgggtacacactgcc
atgcttgactgaaaagcattttttaaaagttagatctttgtttaaaaggt
aggcactttacagatatcttgctcaaacacctctaggtgttacggagggg
gtccatcaaagtccctgatggaaatgaaagtgtatgcatttctctgctga
ctgacactcctacccccttttaattaggaaacacaaaagtagtaacaagt
tacatacagaaccatggctgagtgactactgaaacctgaacaaaagtttt
atgcttgacttatgccctgcttaaaccccaaggccatactattttaatct
gacagatagttaagggtgtgcttaaaggcctaagggaacctatttaaaat
gttgtgttgggaacagggggtttttatatatatagcacaagggcttttac
ccttggagaaattgatgcaatttgctctcttgcccaggcctttccacaaa
ccaagctgggccaccaattca
gaattcaccctgcagcgtgtgtaatgcaaagtatttccagcttatttcag
gaggtgagaaaacatccctgaaagtgagcacacctctagacttctccatt
ttccctccccttgcccagtccaggggcaggctgggtggtcctttccctga
tagacagagactctcttagaagtcatcattacccacaatcctgtctgtta
caatttgttacatcagatattacaatttctacatcagaacatgtataaat
gtgggactacttacaaagttactcaggttacgtgggggaaagggcaacaa
tgccttgttgtttctccagagcccagtccttcttggctggtggaagcagc
taccacatagcctgctggaatcctggtttgttctccttagtgtccccaga
ctattttaaacctctgtcatcttaactttctttaacaagaaagaagagga
agagctaaaatacttatttgaaactctgcttgcagacaggagcctcacat
gactgtcttcggagacgcttcatccagcaactgacagattcagagaccca
cagccaaacatcaggcagagctcggggagtcttgtggaagagtgggggat
aggattgaaagagcctgaggggtcaaggggaccactcgaagacctacaga
gtcaactaacctgcacccatggggggctcacagaggctgaacaaccaatc
aaagagcatatggggctggacctagcccccgcccccccacatatgtagca
gatgtgcagcttggtcttcatgtgggttctccaataactggagcaggcac
agaggtgagggaggtgtcttgcctatgactctgttgcttgctttggattc
ctttcctctacctgggttgctttgtctggccttcgtgagagaggatgcac
ttagtctcctgctgtgacttactggtgcaaggggtacggttgttgggtgg
gcgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_58772103_58773160
seq2: B6Ng01-196D11.b_44_1114

seq1  GAATTCTCCAAATCCTCCTCAGCTTCCCAAGCGCGAAGATTACTGACATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCAAATCCTCCTCAGCTTCCCAAGCGCGAAGATTACTGACATG  50

seq1  AGCTCCTGCACCCAGGTCTTTCACAGTTTTTGATCTACATTTAATACCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCTGCACCCAGGTCTTTCACAGTTTTTGATCTACATTTAATACCTC  100

seq1  AGTTTTTATTTACTTATTTGTTTATTTGATGTATGTGAATAAAATGTAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTTATTTACTTATTTGTTTATTTGATGTATGTGAATAAAATGTAGC  150

seq1  TGTCTTCAGACACACCAGAAGAGGGCATTAGATCCCATTACAGATGGTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCAGACACACCAGAAGAGGGCATTAGATCCCATTACAGATGGTTG  200

seq1  TGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTAGAAGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTAGAAGAAG  250

seq1  AGCAGTCAGTGCTCTTAACCGATGAGCCATCTCTCCAGCCCACCTCAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTCAGTGCTCTTAACCGATGAGCCATCTCTCCAGCCCACCTCAGTT  300

seq1  TTTCAGTGTGATTGAAAACTCCACTTGCTTTAACTACTTTCAAGGTTTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTGTGATTGAAAACTCCACTTGCTTTAACTACTTTCAAGGTTTAG  350

seq1  TGTGCTTTGAAGTAAGTGACTTCCTTCAAAGATCTTGTTTTACAAGTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTTGAAGTAAGTGACTTCCTTCAAAGATCTTGTTTTACAAGTGGG  400

seq1  AACCAGAGCTTCATGGACCTGTGAAATGTTCCATGTTTAAAAGTCCCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGAGCTTCATGGACCTGTGAAATGTTCCATGTTTAAAAGTCCCCCT  450

seq1  TTGCCTTATATTTCTGTGATCTTTTAAAAAATACTTTTTTTCTCTTGTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTTATATTTCTGTGATCTTTTAAAAAATACTTTTTTTCTCTTGTAG  500

seq1  CTTTAGTTTTTGGTTTTGTTTGAGACTGAGTCTCCTGGAGCCTGGGCCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGTTTTTGGTTTTGTTTGAGACTGAGTCTCCTGGAGCCTGGGCCAA  550

seq1  CCTTGAACTCCTGGTCCTCTCTGTTACCTTAGTTATGGGTACACACTGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAACTCCTGGTCCTCTCTGTTACCTTAGTTATGGGTACACACTGCC  600

seq1  ATGCTTGACTGAAAAGCATTTTTTAAAAGTTAGATCTTTGTTTAAAAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTGACTGAAAAGCATTTTTTAAAAGTTAGATCTTTGTTTAAAAGGT  650

seq1  AGGCACTTTACAGATATCTTGCTCAAACACCTCTAGGTGTTACGGAGGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACTTTACAGATATCTTGCTCAAACACCTCTAGGTGTTACGGAGGGG  700

seq1  GTCCATCAAAGTCCCTGATGGAAATGAAAGTGTATGCATTTCTCTGCTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATCAAAGTCCCTGATGGAAATGAAAGTGTATGCATTTCTCTGCTGA  750

seq1  CTGACACTCCTACCCCCTTTTAATTAGGAAACACAAAAGTAGTAACAAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACACTCCTACCCCCTTTTAATTAGGAAACACAAAAGTAGTAACAAGT  800

seq1  TACATACAGAACCATGGCTGAGTGACTACTGAAACCTGAACAAAAGTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATACAGAACCATGGCTGAGTGACTACTGAAACCTGAACAAAAGTTTT  850

seq1  ATGCTTGACTTATGCCCTGCTTAAACCCCAAGGCCATACTATTTTAATCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTGACTTATGCCCTGCTTAAACCCCAAGGCCATACTATTTTAATCT  900

seq1  GACAGATAGTTAAGGGTGTGCTTAAAGGCCT-AGGGAACCTA-TTAAAAT  948
      ||||||||||||||||||||||||||||||| |||||||||| |||||||
seq2  GACAGATAGTTAAGGGTGTGCTTAAAGGCCTAAGGGAACCTATTTAAAAT  950

seq1  GTTGTGGTGGGAACAGGGGG-TTTTATATATATAGCACAAGG--CTTTAC  995
      |||||| ||||||||||||| |||||||||||||||||||||   |||||
seq2  GTTGTGTTGGGAACAGGGGGTTTTTATATATATAGCACAAGGGCTTTTAC  1000

seq1  CC-TGGAGAAA-TGATGCAA-TTGCTCTC-TGCCCAGG-CTTTCCACAAA  1040
      || |||||||| |||||||| |||||||| |||||||| |||||||||||
seq2  CCTTGGAGAAATTGATGCAATTTGCTCTCTTGCCCAGGCCTTTCCACAAA  1050

seq1  -CAAGCT-GGCCACC-ATTCA  1058
       |||||| ||||||| |||||
seq2  CCAAGCTGGGCCACCAATTCA  1071