BAC Information

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BAC

Clone NameB6Ng01-196E19
Chromosome1 (Build37)
Map Location 175,817,246 - 175,818,414
singlet/doubletsinglet
Overlap genenone
Upstream geneApcs, Olfr16, GA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403, Darc, Cadm3, Aim2, EG240921, BC094916, LOC623121, AI447904, E430029J22Rik, LOC665972, AI607873, Ifi204, EG666028, LOC100040462
Downstream geneMnda, Ifi203, Ifi202b, Ifi205, Olfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1, Olfr244, Olfr424, Olfr423-ps1, Olfr421, Olfr422-ps1, Olfr420, Spna1, Olfr419, 1810030J14Rik, Olfr417, GA_x5J8B7W3B3M-312879-313274, GA_x5J8B7W3B3M-318013-318414, Olfr415, Olfr414, Olfr220, Fmn2, Grem2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-196E19.bB6Ng01-196E19.g
ACCGA018477GA018478
length1,2171,165
definitionB6Ng01-196E19.b B6Ng01-196E19.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagtcccattatttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgccggtgtcttttgccttgcagaaattttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttccaggcttttccccac
tttctcctctataaatttcagtgtctctggttttatgtgaagttccatga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcaaagattaagt
gaccataggtgtgtgggttcatctctgggtcttcaattctggtctattgg
tctacttgtctgtctcaataccagtgccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcattgtgattccaccagaggctcttt
tatccttgagaagagtttttgctatcctaggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagagacttgggagttttatcata
cagatctttcactttccttagttagagtcgcgccaagatatttttatatc
atttatgactattgagaaggtgttgtttccctaatttctttctcagcctg
tttattcttgtgtagagaaaggccattgacctgttgagtaaattttatat
cagcttacttcaccgagcttgtttatcaggtttaggagttctcttggtga
attttagggtcactataatatactatcatatcatctggcagaacagtgat
atttgactctcttccaagtggtatctcatggatcccccttggtgtccgga
aaatggcctctctgtcg
gaattcctgtcaggggtctgagttgacttacagatgctggagaggcctga
ggttgatcctccacaaggtcaaggttggacattgcctgggacagcatgtc
tgtttgtgtagacttattgtttgagttctcctatttaaaatgaaaaaaaa
aaaaaaggttgttctcctttataccttgatagttactttcaaagtcacag
acattattggcactttttcctttagttttgttcacagaatatctttgctc
tctaattttttccctggaatgacagcacatctttagataactttacattc
cagataccttaacaaagattacaaactacagtgtgcaaatatgttttaaa
tattagtttgctctcagtttttctgccctccactccatgacttcttcttt
gtgcctgcttgccggttcttgctgggttccccttttctatgcaagattgt
cccaacttctgctttctaattgcatctattcacccaccctttccatttct
accctctctgatgacttcttccttcctgctcatgatctcttttctacctt
tgtggcttactcacaacttcacatccgtgtcccccaccccacacacataa
tgtgtaagtacaatatttcacattacaagtgctcttctgtgatggaatgt
gtggcataattgtattggacactgaccacagatagattggtcaattacaa
cttttacttgtgtttttctttgcattccacattctctctaattaagatat
taatttttctacttgtcttcaagatctgaaatcctctcgtctataatctg
ttggaggagcctatatctgagatgtttgacttcctaagttttttttttca
tttccagttatatttaagtttgggtttccttagtgattcctttatcttca
taaaatgctattttcatgtttgaattgttataatcatgtcattcaattct
atgtattttcaaaaacctttaataaagcctttgtcatattcttcaaggcg
tttgtaaaattgctattttcaaagtctttgcttcatgattcagataaatt
tcttttcttctgagctgttacagattgcttgtttgcagaagagtcatatt
ctctgttgctcttatggaatttgttctgggatctaattcaggatcatatt
gacaggttgtggatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_175817246_175818414
seq2: B6Ng01-196E19.g_66_1230

seq1  GAATTCCTGTCAGGGGTCTGAGTTGACTTACAGATGCTGGAGAGGCCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTCAGGGGTCTGAGTTGACTTACAGATGCTGGAGAGGCCTGA  50

seq1  GGTTGATCCTCCACAAGGTCAAGGTTGGACATTGCCTGGGACAGCATGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGATCCTCCACAAGGTCAAGGTTGGACATTGCCTGGGACAGCATGTC  100

seq1  TGTTTGTGTAGACTTATTGTTTGAGTTCTCCTATTTAAAATG-AAAAAAA  149
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGTTTGTGTAGACTTATTGTTTGAGTTCTCCTATTTAAAATGAAAAAAAA  150

seq1  AAAAAAGGTTGTTCTCCTTTATACCTTGATAGTTACTTTCAAAGTCACAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGGTTGTTCTCCTTTATACCTTGATAGTTACTTTCAAAGTCACAG  200

seq1  ACATTATTGGCACTTTTTCCTTTAGTTTTGTTCACAGAATATCTTTGCTC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTATTGGCACTTTTTCCTTTAGTTTTGTTCACAGAATATCTTTGCTC  250

seq1  TCTAATTTTTTCCCTGGAATGACAGCACATCTTTAGATAACTTTACATTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATTTTTTCCCTGGAATGACAGCACATCTTTAGATAACTTTACATTC  300

seq1  CAGATACCTTAACAAAGATTACAAACTACAGTGTGCAAATATGTTTTAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATACCTTAACAAAGATTACAAACTACAGTGTGCAAATATGTTTTAAA  350

seq1  TATTAGTTTGCTCTCAGTTTTTCTGCCCTCCACTCCATGACTTCTTCTTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGTTTGCTCTCAGTTTTTCTGCCCTCCACTCCATGACTTCTTCTTT  400

seq1  GTGCCTGCTTGCCGGTTCTTGCTGGGTTCCCCTTTTCTATGCAAGATTGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTGCTTGCCGGTTCTTGCTGGGTTCCCCTTTTCTATGCAAGATTGT  450

seq1  CCCAACTTCTGCTTTCTAATTGCATCTATTCACCCACCCTTTCCATTTCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACTTCTGCTTTCTAATTGCATCTATTCACCCACCCTTTCCATTTCT  500

seq1  ACCCTCTCTGATGACTTCTTCCTTCCTGCTCATGATCTCTTTTCTACCTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCTCTGATGACTTCTTCCTTCCTGCTCATGATCTCTTTTCTACCTT  550

seq1  TGTGGCTTACTCACAACTTCACATCCGTGTCCCCCACCCCACACACATAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCTTACTCACAACTTCACATCCGTGTCCCCCACCCCACACACATAA  600

seq1  TGTGTAAGTACAATATTTCACATTACAAGTGCTCTTCTGTGATGGAATGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAAGTACAATATTTCACATTACAAGTGCTCTTCTGTGATGGAATGT  650

seq1  GTGGCATAATTGTATTGGACACTGACCACAGATAGATTGGTCAATTACAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCATAATTGTATTGGACACTGACCACAGATAGATTGGTCAATTACAA  700

seq1  CTTTTACTTGTGTTTTTCTTTGCATTCCACATTCTCTCTAATTAAGATAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTACTTGTGTTTTTCTTTGCATTCCACATTCTCTCTAATTAAGATAT  750

seq1  TAATTTTTCTACTTGTCTTCAAGATCTGAAATCCTCTCGTCTATAATCTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTTCTACTTGTCTTCAAGATCTGAAATCCTCTCGTCTATAATCTG  800

seq1  TTGGAGGAGCCTATATCTGAGATGTTTGACTTCCTAAG-TTTTTTTTTCA  848
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTGGAGGAGCCTATATCTGAGATGTTTGACTTCCTAAGTTTTTTTTTTCA  850

seq1  TTTCCAGTTATATTTAAGTTTGGGTTTCCTTAGTGATTCC-TTATCTTCA  897
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTTCCAGTTATATTTAAGTTTGGGTTTCCTTAGTGATTCCTTTATCTTCA  900

seq1  TAAAATGCTATTTTCATGTTTGAATTGTTATAATCATGTCATTCAATTCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGCTATTTTCATGTTTGAATTGTTATAATCATGTCATTCAATTCT  950

seq1  ATGTATTTTC-AAAACCTTT-ATAAAGCC-TTGTCATA-TCTTCAA-GCG  992
      |||||||||| ||||||||| |||||||| |||||||| ||||||| |||
seq2  ATGTATTTTCAAAAACCTTTAATAAAGCCTTTGTCATATTCTTCAAGGCG  1000

seq1  TATGTAAAATTGCTA-TTTCAAAGTCTTTGCCTCATGATTCAGATAAATT  1041
      | ||||||||||||| ||||||||||||||| ||||||||||||||||||
seq2  TTTGTAAAATTGCTATTTTCAAAGTCTTTGCTTCATGATTCAGATAAATT  1050

seq1  TCTTTTC-TCTGAGCCTGTTACAGATTGC-TGTTTGCAGGAAGAGTCATA  1089
      ||||||| |||||| |||||||||||||| |||||||| |||||||||||
seq2  TCTTTTCTTCTGAG-CTGTTACAGATTGCTTGTTTGCA-GAAGAGTCATA  1098

seq1  TTCTCCTGGTTGCTCTTATTTGTATTTTTGTTCTGGAATCTATATCCAAG  1139
      |||||   ||||||||||  || |  |||||||||| |||||  ||  ||
seq2  TTCTC--TGTTGCTCTTA--TGGA-ATTTGTTCTGGGATCTAATTC--AG  1141

seq1  GAGTTACAATATTTGAAGAGGTTGTGGATT  1169
      |    |  |||||   | ||||||||||||
seq2  G----ATCATATT--GACAGGTTGTGGATT  1165