BAC Information

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BAC

Clone NameB6Ng01-196F22
Chromosome1 (Build37)
Map Location 116,624,111 - 116,805,559
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC227506, Cntnap5a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-196F22.bB6Ng01-196F22.g
ACCGA018531GA018532
length1,011946
definitionB6Ng01-196F22.b B6Ng01-196F22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,804,546 - 116,805,559)(116,624,111 - 116,625,052)
sequence
gaattcaggacctctggaagaggagtcagtgctcttaaccactgaggcat
tgttccagcccctaagtcagataattttaaagacctttattcttggaaat
tcgtaggattgtagccttgaaatgtagcttgtagagattataaatttctg
gatatcataatttataagttctaatgaggagtttcattgttggattaagg
tatcctggaggatgctggctgtagatagaatgctaacttgtgaaatgctg
gtgattaaaacaaaactttgtaaatatctatttccatcaggatgctaaag
actgatatttatcagatactactatcctctgtgtcagtctaaaggaaaca
tccctgaaacaaagcactgcaacccataatggctgcattgagttttatga
atcacactagagaaacataaataggttgattagtaaaagataatttcact
aagatattcataagactattttatcccgtgtttttctacagctaatattt
aaactgaccagacagaacaaaaggaaaaaaaaaaaagataattttactac
ttgacattgatcaggattgttgtttactgtagttccttaagctgcctaat
tctctatagggaacggtttttagagctaattccatcattcttctctatat
atcctaggtagtgattcattctctctctctctctctctctctctctctct
ctagatattctgtttaacattattttctttttttctttttttatattttt
aaagttttttattagatattttctttatttacatttcaatatttcaaatg
ttatcccctttcttggtttcccctctgaaaacccccacccccttccctct
tcccaacccacccactctgcttctggctctggcaatatacaggaatatgg
agaacctgaagagaacttgttccagaatacacatgatatgaacttgcctc
ttgcaatacctctttgcaaatactcttctcatctgattattttcttctct
cctcattctct
gaattctctaagagaaaaacatcacaggtggcaaaaataaaattatattc
gtagatctactgaagaaagaaatgctattcaaggaatgaagaaaattgcc
ttttcccaactggaagtcattttttaaataggagcatgaaatggagacca
tatgcattacatttcatttcatttcaatttatttatttatttatttattt
atttatttatttatgttgaagcatgattgttttttatttccatgtttagt
tcagatcttctcagtgtaggctgaggcctggatgtaagctatacagtgat
aaagtagagacaacaatctacaggttaatagagatgttggaaaagataca
tttggcatggttaagtttctttccttgttttttacattttcttagggata
ttcaagcaagtgggtttattcacctcaaattacactactaacagacaaac
tgaatgttttcaccaactctagatttagctatctagtgagtttattatgg
ttatatacataagcgtggatgactcaaaggcaggcaaatcaccacaaatc
tgataaaagcataattaatgaataatgaaagctgcataagctatgtgcta
ttcagaaccacttcaaagatgatggactggtcagagtcttttctctctag
cattatatttcttcttttataatcgtgaagagggatttgtaaaattttgt
aaatttttataaaattttttctgagacttgtgagttgtgtttacctcatg
attcttggcataatcttttctcatcattctttttgggaattattcagctt
aaaataaaatactacataatatgctttataaaaagttatgccaacattgt
gttctcagtttatatgtagaagtgtccatcaataaatggtccacaaatta
taagaatacatgatgtagtcatctgccatattcattggcttgattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_116804546_116805559
seq2: B6Ng01-196F22.b_46_1056 (reverse)

seq1  AGAGAAGGAGGGAGAG-AGAAAATAAACAGATGAG-AGAGTATATTGCAA  48
      |||||| || |||||| ||||||||| |||||||| ||||||| ||||||
seq2  AGAGAATGA-GGAGAGAAGAAAATAATCAGATGAGAAGAGTAT-TTGCAA  48

seq1  AGAGTATTTGCAAGAGGCAAGTTCATTATCATGTGTA-TCTGGAACAGTT  97
      ||||   |||||||||||||||||| ||||||||||| |||||||||  |
seq2  AGAGGTATTGCAAGAGGCAAGTTCA-TATCATGTGTATTCTGGAACAAGT  97

seq1  TCTCTTTCAGGTTTCTCCCATA-TCCTGTATATTGCCAGGGCCAGAAGCA  146
      |||| |||||| |||| ||||| |||||||||||||||| ||||||||||
seq2  TCTC-TTCAGG-TTCT-CCATATTCCTGTATATTGCCAGAGCCAGAAGCA  144

seq1  GGAGTGGGTGGGTTGGGGAGAGGGGAGGGGGTGGGGGTTTTCAGAGGGGA  196
       |||||||||||||||| |||||| |||||||||||||||||||||||||
seq2  -GAGTGGGTGGGTTGGGAAGAGGGAAGGGGGTGGGGGTTTTCAGAGGGGA  193

seq1  AACCAGGAAAGGGGATAACATTTGAAATATTTGAAATGTAAATAAAGAAA  246
      ||||| ||||||||||||||||||||||| ||||||||||||||||||||
seq2  AACCAAGAAAGGGGATAACATTTGAAATA-TTGAAATGTAAATAAAGAAA  242

seq1  ATATCTAATAAAAAACTTTAAAAATATAAAAAAAGAAAAAAAGAAAATAA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTAATAAAAAACTTTAAAAATATAAAAAAAGAAAAAAAGAAAATAA  292

seq1  TGTTAAACAGAATATCTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAACAGAATATCTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  342

seq1  ATGAATCACTACCTAGGATATATAGAGAAGAATGATGGAATTAGCTCTAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATCACTACCTAGGATATATAGAGAAGAATGATGGAATTAGCTCTAA  392

seq1  AAACCGTTCCCTATAGAGAATTAGGCAGCTTAAGGAACTACAGTAAACAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCGTTCCCTATAGAGAATTAGGCAGCTTAAGGAACTACAGTAAACAA  442

seq1  CAATCCTGATCAATGTCAAGTAGTAAAATTATC-TTTTTTTTTTTCCTTT  495
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CAATCCTGATCAATGTCAAGTAGTAAAATTATCTTTTTTTTTTTTCCTTT  492

seq1  TGTTCTGTCTGGTCAGTTTAAATATTAGCTGTAGAAAAACACGGGATAAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTGTCTGGTCAGTTTAAATATTAGCTGTAGAAAAACACGGGATAAA  542

seq1  ATAGTCTTATGAATATCTTAGTGAAATTATCTTTTACTAATCAACCTATT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCTTATGAATATCTTAGTGAAATTATCTTTTACTAATCAACCTATT  592

seq1  TATGTTTCTCTAGTGTGATTCATAAAACTCAATGCAGCCATTATGGGTTG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTCTCTAGTGTGATTCATAAAACTCAATGCAGCCATTATGGGTTG  642

seq1  CAGTGCTTTGTTTCAGGGATGTTTCCTTTAGACTGACACAGAGGATAGTA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTTTGTTTCAGGGATGTTTCCTTTAGACTGACACAGAGGATAGTA  692

seq1  GTATCTGATAAATATCAGTCTTTAGCATCCTGATGGAAATAGATATTTAC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTGATAAATATCAGTCTTTAGCATCCTGATGGAAATAGATATTTAC  742

seq1  AAAGTTTTGTTTTAATCACCAGCATTTCACAAGTTAGCATTCTATCTACA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTTGTTTTAATCACCAGCATTTCACAAGTTAGCATTCTATCTACA  792

seq1  GCCAGCATCCTCCAGGATACCTTAATCCAACAATGAAACTCCTCATTAGA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCATCCTCCAGGATACCTTAATCCAACAATGAAACTCCTCATTAGA  842

seq1  ACTTATAAATTATGATATCCAGAAATTTATAATCTCTACAAGCTACATTT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATAAATTATGATATCCAGAAATTTATAATCTCTACAAGCTACATTT  892

seq1  CAAGGCTACAATCCTACGAATTTCCAAGAATAAAGGTCTTTAAAATTATC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCTACAATCCTACGAATTTCCAAGAATAAAGGTCTTTAAAATTATC  942

seq1  TGACTTAGGGGCTGGAACAATGCCTCAGTGGTTAAGAGCACTGACTCCTC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTAGGGGCTGGAACAATGCCTCAGTGGTTAAGAGCACTGACTCCTC  992

seq1  TTCCAGAGGTCCTGAATTC  1014
      |||||||||||||||||||
seq2  TTCCAGAGGTCCTGAATTC  1011

seq1: chr1_116624111_116625052
seq2: B6Ng01-196F22.g_67_1012

seq1  GAATTCTCTAAGAGAAAAACATCACAGGTGGCAAAAATAAAATTATATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAAGAGAAAAACATCACAGGTGGCAAAAATAAAATTATATTC  50

seq1  GTAGATCTACTGAAGAAAGAAATGCTATTCAAGGAATGAAGAAAATTGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATCTACTGAAGAAAGAAATGCTATTCAAGGAATGAAGAAAATTGCC  100

seq1  TTTTCCCAACTGGAAGTCATTTTTTAAATAGGAGCATGAAATGGAGACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCAACTGGAAGTCATTTTTTAAATAGGAGCATGAAATGGAGACCA  150

seq1  TATGCATTACATTTCATTTCATTTCAATTTATTTATTTATTTATTTATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCATTACATTTCATTTCATTTCAATTTATTTATTTATTTATTTATTT  200

seq1  ATTTATTTATTTATGTTGAAGCATGATTGTTTTTTATTTCCATGTTTAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTATTTATGTTGAAGCATGATTGTTTTTTATTTCCATGTTTAGT  250

seq1  TCAGATCTTCTCAGTGTAGGCTGAGGCCTGGATGTAAGCTATACAGTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATCTTCTCAGTGTAGGCTGAGGCCTGGATGTAAGCTATACAGTGAT  300

seq1  AAAGTAGAGACAACAATCTACAGGTTAATAGAGATGTTGGAAAAGATACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAGAGACAACAATCTACAGGTTAATAGAGATGTTGGAAAAGATACA  350

seq1  TTTGGCATGGTTAAGTTTCTTTCCTTGTTTTTTACATTTTCTTAGGGATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCATGGTTAAGTTTCTTTCCTTGTTTTTTACATTTTCTTAGGGATA  400

seq1  TTCAAGCAAGTGGGTTTATTCACCTCAAATTACACTACTAACAGACAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGCAAGTGGGTTTATTCACCTCAAATTACACTACTAACAGACAAAC  450

seq1  TGAATGTTTTCACCAACTCTAGATTTAGCTATCTAGTGAGTTTATTATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGTTTTCACCAACTCTAGATTTAGCTATCTAGTGAGTTTATTATGG  500

seq1  TTATATACATAAGCGTGGATGACTCAAAGGCAGGCAAATCACCACAAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATACATAAGCGTGGATGACTCAAAGGCAGGCAAATCACCACAAATC  550

seq1  TGATAAAAGCATAATTAATGAATAATGAAAGCTGCATAAGCTATGTGCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAAAGCATAATTAATGAATAATGAAAGCTGCATAAGCTATGTGCTA  600

seq1  -TCAGAACCACTTCAAAGATGATGGACTGGTCAGAGTCTTTTCTCTCTAG  649
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAACCACTTCAAAGATGATGGACTGGTCAGAGTCTTTTCTCTCTAG  650

seq1  CAATATATTTCTTCTTTTATAATCGTGAAGAGGGA-TTGTAAAATCTTGT  698
      || |||||||||||||||||||||||||||||||| ||||||||| ||||
seq2  CATTATATTTCTTCTTTTATAATCGTGAAGAGGGATTTGTAAAATTTTGT  700

seq1  AAA-TTTTAT-AAATTTTTTCTGAGACTTGTGAGTTGTGTTTACCTCATG  746
      ||| |||||| |||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTTATAAAATTTTTTCTGAGACTTGTGAGTTGTGTTTACCTCATG  750

seq1  AATCTTGGCATAATCTTTTCTCATCA-TCTTTTT-GGAATAATTCAGCTT  794
      | |||||||||||||||||||||||| ||||||| ||||| |||||||||
seq2  ATTCTTGGCATAATCTTTTCTCATCATTCTTTTTGGGAATTATTCAGCTT  800

seq1  AAAATAAATAACTACATAATATGCTTATAAAAAAGTTATTGCAACA-TGT  843
      ||||||||  ||||||||||||||||   ||||||||||  ||||| |||
seq2  AAAATAAAATACTACATAATATGCTTTATAAAAAGTTATGCCAACATTGT  850

seq1  GTTCTCAGTTTATATGTAG-AGTGTTCATCAATAAAATGGT-CACAAATT  891
      ||||||||||||||||||| ||||| ||||||| ||||||| ||||||||
seq2  GTTCTCAGTTTATATGTAGAAGTGTCCATCAAT-AAATGGTCCACAAATT  899

seq1  ATTAAAAATACATGATGTAGTCATCTGCCAATATTCATTGTGGCTTGATT  941
      | ||| ||||||||||||||||||||||| ||||||||  ||||||||||
seq2  A-TAAGAATACATGATGTAGTCATCTGCC-ATATTCAT--TGGCTTGATT  945

seq1  C  942
      |
seq2  C  946