BAC Information

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BAC

Clone NameB6Ng01-196H21
Chromosome1 (Build37)
Map Location 160,287,632 - 160,372,680
singlet/doubletdoublet
Overlap geneAstn1
Upstream geneRasal2, Gabarapl2-ps1_1522.1, 2810025M15Rik, BC026585, Lztr2, LOC664935, LOC100039217, 6430517E21Rik
Downstream genePappa2, 4930562F17Rik, EG240853, LOC664972, Rfwd2, EG620484
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-196H21.bB6Ng01-196H21.g
ACCGA018619GA018620
length1,032950
definitionB6Ng01-196H21.b B6Ng01-196H21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(160,287,632 - 160,288,687)(160,371,772 - 160,372,680)
sequence
gaattcccagtgagtcacatgatgaaggcctatatagaggagaataggca
gagagggagacaagtgtctccatttagtttccttgagttgagagcaacat
cggagattgttttggaaagaagtagacaaaacagagggcagaggttagat
gtacacagaggaaggatatatctggggttaggtataaagtgcccctttag
ccagatgctctgaaagagtgaggaagtctagaaactgcttcttatctaca
aacccccacccatttccatcatatctgatctctacttgttttctactctg
catctcacccaagttattccttctacactctgcaggagtctggctataaa
acatgccagagaatggcggtcctgtggagtccccagatcttcaactaaga
taaaatatctaaataaactactgagagtttaactgctcctgactgtggag
ccagttgttcctgagattcctagagacagaggcccactgaacctaaccca
cgtaagaacgctttggaggtcttcctgtgaaataacttgagggagtgagg
gaatggatgaatggtaggacaggtgtaacttctgtcaatggaaagaagga
aagtgccaggatttctcaagaagggacagccaatcaaaatcttgatgaaa
atcaagaaacttgggctgtgttttcttaaatcacccatgatattttaatg
aagaaaatcacacactaaaaaaaccctacaaatgttcatctgatgaaggt
actttgaggtaactactattcacttcatttccaacattacaagaagcaaa
cattgattctttcttagtaatctaatacagccaaagaggactactatgca
atacccactccaagatttcactctctcttaaccgtgaaaaatatagaata
ttagagatacagtgctctacacctaattctccactcactatgtctgcaca
gagctgatgatcatctgagtagtccacctttgacctgtgctgcaccatac
tatctttctcgatgatttaaaagtcaaggaat
gaattctgcccattcagcaacactcaggacattatttattattcagaggt
gaccacagcctcttttacaaccttcagactttgtgaatctcctctaatcc
ctacctctgccctcaggctgcctaggtatacaagaaatactagtaaatcc
ttccctcttgttgcactgaatcaatgtccctgtagtcttgcaagtcctca
accatgcttcacactgagccaacttttggattgaagcataaaactcaaac
tcttgctgaaagcattcgggaagcctaaggtgtttatgggaactggggag
tgttaatccccacttgtgaggccagctcctactctggtaattacttttcc
cttaaaaaaaaagtctcttgctggctgctgttagaagcagcccatcattt
ttcacctcacagaactaccagccccagtgtctctgaggggggctttcctt
tcagggtgatagcttacattttcagcacccagcagaggtggggactctgg
gtccctgggggtttgggaagagtggtttggcaagaagttctgggattaat
gaaagttgtgtgcctgtaaggtatttattatcaccctaaatcttttccca
tcctttctagccaggggaaagagcaatgagaaaatggacccgcacgtgcc
ctctgagttttcagttttagtatacgcctaacgggctaagattgtgacaa
gcccatctgaacctcctcgggatgtgacaggattggattggaaatctgct
taaagcatctgaaagagaatagaagacgttcctacttgccagtccatgtg
gagcttgtgacctgctgcttcctgccactgataagaaaaagcaaggccac
ttctggctgcagagtcaaatatattccacctctaaatatcaaacatactc
ccatcctgcctggctctgttgaacatattcagttgccacaggcttcacta

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_160287632_160288687
seq2: B6Ng01-196H21.b_47_1078

seq1  GAATTCCCAGTGAGTCACATGATGAAGGCCTATATAGAGGAGAATAGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAGTGAGTCACATGATGAAGGCCTATATAGAGGAGAATAGGCA  50

seq1  GAGAGGGAGACAAGTGTCTCCATTTAGTTTCCTTGAGTTGAGAGCAACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGGAGACAAGTGTCTCCATTTAGTTTCCTTGAGTTGAGAGCAACAT  100

seq1  CGGAGATTGTTTTGGAAAGAAGTAGACAAAACAGAGGGCAGAGGTTAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGATTGTTTTGGAAAGAAGTAGACAAAACAGAGGGCAGAGGTTAGAT  150

seq1  GTACACAGAGGAAGGATATATCTGGGGTTAGGTATAAAGTGCCCCTTTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACAGAGGAAGGATATATCTGGGGTTAGGTATAAAGTGCCCCTTTAG  200

seq1  CCAGATGCTCTGAAAGAGTGAGGAAGTCTAGAAACTGCTTCTTATCTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATGCTCTGAAAGAGTGAGGAAGTCTAGAAACTGCTTCTTATCTACA  250

seq1  AACCCCCACCCATTTCCATCATATCTGATCTCTACTTGTTTTCTACTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCCACCCATTTCCATCATATCTGATCTCTACTTGTTTTCTACTCTG  300

seq1  CATCTCACCCAAGTTATTCCTTCTACACTCTGCAGGAGTCTGGCTATAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCACCCAAGTTATTCCTTCTACACTCTGCAGGAGTCTGGCTATAAA  350

seq1  ACATGCCAGAGAATGGCGGTCCTGTGGAGTCCCCAGATCTTCAACTAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCCAGAGAATGGCGGTCCTGTGGAGTCCCCAGATCTTCAACTAAGA  400

seq1  TAAAATATCTAAATAAACTACTGAGAGTTTAACTGCTCCTGACTGTGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATATCTAAATAAACTACTGAGAGTTTAACTGCTCCTGACTGTGGAG  450

seq1  CCAGTTGTTCCTGAGATTCCTAGAGACAGAGGCCCACTGAACCTAACCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTGTTCCTGAGATTCCTAGAGACAGAGGCCCACTGAACCTAACCCA  500

seq1  CGTAAGAACGCTTTGGAGGTCTTCCTGTGAAATAACTTGAGGGAGTGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAAGAACGCTTTGGAGGTCTTCCTGTGAAATAACTTGAGGGAGTGAGG  550

seq1  GAATGGATGAATGGTAGGACAGGTGTAACTTCTGTCAATGGAAAGAAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGATGAATGGTAGGACAGGTGTAACTTCTGTCAATGGAAAGAAGGA  600

seq1  AAGTGCCAGGATTTCTCAAGAAGGGACAGCCAATCAAAATCTTGATGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCCAGGATTTCTCAAGAAGGGACAGCCAATCAAAATCTTGATGAAA  650

seq1  ATCAAGAAACTT-GGCTGTGTTTTCTTAAATCACCCATGATATTTTAATG  699
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATCAAGAAACTTGGGCTGTGTTTTCTTAAATCACCCATGATATTTTAATG  700

seq1  AAGAAAATCACACACTAAAAAAA-CCTACAAATGTTCATCTGATGAAGGT  748
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AAGAAAATCACACACTAAAAAAACCCTACAAATGTTCATCTGATGAAGGT  750

seq1  ACTTTGAGGTAACTACTATTCACTTCATTTCCAACATTACAAGAAGCAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGAGGTAACTACTATTCACTTCATTTCCAACATTACAAGAAGCAAA  800

seq1  CATTGATTCTTTCTTAGTAAATCTAATAACAGCCCAAAGAGGACTACTAT  848
      |||||||||||||||||| |||||||| |||| |||||||||||||||||
seq2  CATTGATTCTTTCTTAGT-AATCTAAT-ACAG-CCAAAGAGGACTACTAT  847

seq1  GCAAATACCCACTCCCAAAGAATTTCACTCTCTCTTAAACCGTG-AAAAT  897
      || ||||||||||||  ||| ||||||||||||||| ||||||| |||||
seq2  GC-AATACCCACTCC--AAG-ATTTCACTCTCTCTT-AACCGTGAAAAAT  892

seq1  ATAGAATATTAGGAGGATACAGTGCTCTACACCTTATTTCTTCCACTCAC  947
      ||||||||||||   ||||||||||||||||||| |||   |||||||||
seq2  ATAGAATATTAG--AGATACAGTGCTCTACACCTAATT--CTCCACTCAC  938

seq1  TAATGTCTTGGCCACAAGAAGCTGATGATCATCTGAGTTAGTCCCACCCT  997
      | ||||||    ||||   |||||||||||||||||| |||| ||||| |
seq2  T-ATGTCT---GCACA--GAGCTGATGATCATCTGAG-TAGT-CCACCTT  980

seq1  TTAACTGTTGCTGCACACATACTATCTTTTCTTCTAAATGAATATAAAAG  1047
      | | ||| |||||||| ||||||||||    ||||  ||| || ||||||
seq2  TGACCTG-TGCTGCAC-CATACTATCT----TTCTCGATG-ATTTAAAAG  1023

seq1  TCAAGGAAT  1056
      |||||||||
seq2  TCAAGGAAT  1032

seq1: chr1_160371772_160372680
seq2: B6Ng01-196H21.g_66_1015 (reverse)

seq1  TAGTG-AGCCTGTGGCAAACCTGAATTATGTCAAACAGAG-CAGGCAGGA  48
      ||||| ||||||||||||  ||||| |||||  ||||||| |||||||||
seq2  TAGTGAAGCCTGTGGCAA--CTGAA-TATGTTCAACAGAGCCAGGCAGGA  47

seq1  TGGGAGTATGTTTGATATTTAGAGGT-GAATATTATTTGACTCTGGCAG-  96
      |||||||||||||||||||||||||| ||||| ||||||||||| |||| 
seq2  TGGGAGTATGTTTGATATTTAGAGGTGGAATA-TATTTGACTCT-GCAGC  95

seq1  CAGAAGTTGGCCTTGC-TTTTCTTATCAGTGGCA-GAAGCAGCAGGTCAA  144
      |||||| ||||||||| ||||||||||||||||| |||||||||||||| 
seq2  CAGAAG-TGGCCTTGCTTTTTCTTATCAGTGGCAGGAAGCAGCAGGTCAC  144

seq1  CAGCTCCACATGGACTGGCAAGTA-GAACGTCTTCTATTCTC-TTCAGAT  192
       ||||||||||||||||||||||| ||||||||||||||||| |||||||
seq2  AAGCTCCACATGGACTGGCAAGTAGGAACGTCTTCTATTCTCTTTCAGAT  194

seq1  GC-TTAAGCAGATTTCCAATCCAATCCTGTCACAT-CCGA-GAGGTTCAG  239
      || |||||||||||||||||||||||||||||||| |||| |||||||||
seq2  GCTTTAAGCAGATTTCCAATCCAATCCTGTCACATCCCGAGGAGGTTCAG  244

seq1  AT-GGCTTGTCACAATCTTAG-CCGTTAGGCGTATACT-AAACTG-AAAC  285
      || |||||||||||||||||| |||||||||||||||| |||||| ||||
seq2  ATGGGCTTGTCACAATCTTAGCCCGTTAGGCGTATACTAAAACTGAAAAC  294

seq1  TCAGA-GGCACGTGC-GGTCCA-TTTCTCATTGCTCTT--CCCTGGCTAG  330
      ||||| ||||||||| |||||| |||||||||||||||  ||||||||||
seq2  TCAGAGGGCACGTGCGGGTCCATTTTCTCATTGCTCTTTCCCCTGGCTAG  344

seq1  AA--GATGGGAAAAGATT--AGGTGATAAT-AATACCTTACAGGCACACA  375
      ||  ||||||||||||||   ||||||||| |||||||||||||||||||
seq2  AAAGGATGGGAAAAGATTTAGGGTGATAATAAATACCTTACAGGCACACA  394

seq1  AC-TTCATTAAT-CCAGAAC-TCTTGCCAAA-CACTCT--CCAAACCAC-  418
      || ||||||||| ||||||| |||||||||| ||||||  ||||||| | 
seq2  ACTTTCATTAATCCCAGAACTTCTTGCCAAACCACTCTTCCCAAACCCCC  444

seq1  -AGGACCCAGAGTCCC--ACTCTGCT-GGTGCTG-AAATGT-AGCTATCA  462
        ||||||||||||||   ||||||| ||||||| |||||| ||||||||
seq2  AGGGACCCAGAGTCCCCACCTCTGCTGGGTGCTGAAAATGTAAGCTATCA  494

seq1  -CCTG-AAGGAA--GCACCCTCAGAGACACT-GGGCTGGTAG-TCTGTGA  506
       |||| ||||||   | |||||||||||||| |||||||||| |||||||
seq2  CCCTGAAAGGAAAGCCCCCCTCAGAGACACTGGGGCTGGTAGTTCTGTGA  544

seq1  GGTG-AAAATGAT-GGCTGCTTCTAACAGCAGCCAGC-AGAGACTTTTTT  553
      |||| |||||||| ||||||||||||||||||||||| ||||||||||||
seq2  GGTGAAAAATGATGGGCTGCTTCTAACAGCAGCCAGCAAGAGACTTTTTT  594

seq1  TTTAAGGGAAAAGTAATTACCAGAGTAGGAGCTGGCCTCACAAGTGGGGA  603
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGGGAAAAGTAATTACCAGAGTAGGAGCTGGCCTCACAAGTGGGGA  644

seq1  TTAACACTCCCCAGTTCCCATAAACACCTTAGGCTTCCCGAATGCTTTCA  653
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACACTCCCCAGTTCCCATAAACACCTTAGGCTTCCCGAATGCTTTCA  694

seq1  GCAAGAGTTTGAGTTTTATGCTTCAATCCAAAAGTTGGCTCAGTGTGAAG  703
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAGTTTGAGTTTTATGCTTCAATCCAAAAGTTGGCTCAGTGTGAAG  744

seq1  CATGGTTGAGGACTTGCAAGACTACAGGGACATTGATTCAGTGCAACAAG  753
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTTGAGGACTTGCAAGACTACAGGGACATTGATTCAGTGCAACAAG  794

seq1  AGGGAAGGATTTACTAGTATTTCTTGTATACCTAGGCAGCCTGAGGGCAG  803
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGGATTTACTAGTATTTCTTGTATACCTAGGCAGCCTGAGGGCAG  844

seq1  AGGTAGGGATTAGAGGAGATTCACAAAGTCTGAAGGTTGTAAAAGAGGCT  853
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGGGATTAGAGGAGATTCACAAAGTCTGAAGGTTGTAAAAGAGGCT  894

seq1  GTGGTCACCTCTGAATAATAAATAATGTCCTGAGTGTTGCTGAATGGGCA  903
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCACCTCTGAATAATAAATAATGTCCTGAGTGTTGCTGAATGGGCA  944

seq1  GAATTC  909
      ||||||
seq2  GAATTC  950