BAC Information

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BAC

Clone NameB6Ng01-196N13
Chromosome1 (Build37)
Map Location 143,118,377 - 143,288,017
singlet/doubletdoublet
Overlap geneEG226472
Upstream geneKcnt2
Downstream geneLOC639376
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-196N13.bB6Ng01-196N13.g
ACCGA018877GA018878
length773582
definitionB6Ng01-196N13.b B6Ng01-196N13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,118,377 - 143,119,149)(143,287,449 - 143,288,017)
sequence
gaattcctgagtaataaaccgtctaaggctgggaatggtacattttccgt
acctttaccaatatttttaagctactgatatatggaacattttatgatgg
ggtgatgatgaagtttaatgaaaaattaacagtagaattctttaaaatct
atgcatttcttttacaatctatgaaaattgaccaatccactcttgagaaa
ctattcaccctataaaaatttatttatttatttatttgtttatttattta
tttatttatttatttggacatatgtcttctcatttatcccttgaaagctt
cctgataataatttccaaaatgatttcattgaaaaagaacttttatttac
cttatgtaatagccatctccaaagcttactgatgaataaactcatacttt
ttagataattttgagccctagccagctgtttcaactcagctgttctggct
caaactcttctccaagatagcaaattcaatctggcttctcttagcttctc
cgtgaattgacgttcttggcctgaaagtaactctggcatttttttctaat
catgctctttcttattctctggtttcagctgattctgccaacctgcgaag
aactgggtgaattcacaaacaagctcaaccccactatactgaacttactg
cactgactcccgagtaactcactctttcttcttgcactgctcttaaatcg
accccctttcctgtctattctcataatagttgagacatactctatctatg
actcatttgtcggctcctcaatt
gaattcccagaaaaagtggagtcaaatacttattccatttaaacattcac
taatagtatttttcggaatggtattaagaaaaatcagtaaattggaatcc
caagaagtaacatatattgaaaatgtatttaaaactattgtcaggagata
acaacagggatatttttcataacctaacatcattagagaagcaaaaagaa
ggattcaaaattcctccagtaacagaatagagactgatgtagattatgta
taggaatacatatacacacacatatacacatatgcatgcaatgacaattt
aaatccctagcaaacacagaagtggatgctcacactcagctattggatgg
atcacggggctcccaatggaggagctagagaaagtacccaaggagctcaa
gggatctgctcccctataggtggaacaacattatgaactaaccaggaccg
cacagctcttgactctagctgcatatgtataaaaagatggcctactctgc
catcactgaaaagagagggacattggacacgcaaactgtatctgccccag
tacaggggaacgccggggccggtgaaactgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_143118377_143119149
seq2: B6Ng01-196N13.b_41_813

seq1  GAATTCCTGAGTAATAAACCGTCTAATGCTGGGAATGGTACATTTTCCAA  50
      |||||||||||||||||||||||||| |||||||||||||||||||||  
seq2  GAATTCCTGAGTAATAAACCGTCTAAGGCTGGGAATGGTACATTTTCC-G  49

seq1  TAGCTTTACCAATATTTTTAAACTACTAATATATGGAACATTTTATGATG  100
      || |||||||||||||||||| ||||| ||||||||||||||||||||||
seq2  TACCTTTACCAATATTTTTAAGCTACTGATATATGGAACATTTTATGATG  99

seq1  GGGTGATGATGAAGTTTAGTGAAAAATTTACAGTAGAATTCTTTAAAATC  150
      |||||||||||||||||| ||||||||| |||||||||||||||||||||
seq2  GGGTGATGATGAAGTTTAATGAAAAATTAACAGTAGAATTCTTTAAAATC  149

seq1  TATGCATTTCTTTTACAATCTATGAAAATTGACAAAGCAACTCTTGAGAA  200
      ||||||||||||||||||||||||||||||||| || | |||||||||||
seq2  TATGCATTTCTTTTACAATCTATGAAAATTGACCAATCCACTCTTGAGAA  199

seq1  ACTATTCACCCTATAAAAATTTATTTATTTATTTATTTATTTATTTATTT  250
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ACTATTCACCCTATAAAAATTTATTTATTTATTTATTTGTTTATTTATTT  249

seq1  ATTTATTTATTTATTTGGACATATGTCTTCTCATTTATCCCTTGAAAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTATTTATTTGGACATATGTCTTCTCATTTATCCCTTGAAAGCT  299

seq1  TCCTGATAGTAGTTTCCAAAATAATTTCATTGTAAAAGAACTTTTATTTA  350
      |||||||| || |||||||||| ||||||||| |||||||||||||||||
seq2  TCCTGATAATAATTTCCAAAATGATTTCATTGAAAAAGAACTTTTATTTA  349

seq1  CCTTATGTAATAGCCATCTCCAAAGCTTACTGATGAATAAACTCATACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATGTAATAGCCATCTCCAAAGCTTACTGATGAATAAACTCATACTT  399

seq1  TTTAGATAATTTTGAACCCTAGCCAGCTGTTTCAACTCAGCTGTTCTGGC  450
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTTAGATAATTTTGAGCCCTAGCCAGCTGTTTCAACTCAGCTGTTCTGGC  449

seq1  TCAAACTCTTCTCCAAGATAGCAAATTCAATCTGGCTTCTCTTAGCTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACTCTTCTCCAAGATAGCAAATTCAATCTGGCTTCTCTTAGCTTCT  499

seq1  CCATGAATTGACGTTCTTGGCCTGAAAGTAACTCTGGCATTTTTTTCTAA  550
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGAATTGACGTTCTTGGCCTGAAAGTAACTCTGGCATTTTTTTCTAA  549

seq1  TCATGCTCTTTCTTATTCTCTGGTTTCAGCTGATTCTGCCAACCTGCAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||| | 
seq2  TCATGCTCTTTCTTATTCTCTGGTTTCAGCTGATTCTGCCAACCTGCGAA  599

seq1  GAACTGGGTGAATTCACAAACAAGCTCAATCCCACTATACTGAACTTACT  650
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GAACTGGGTGAATTCACAAACAAGCTCAACCCCACTATACTGAACTTACT  649

seq1  GCACTGACTCCCAAGTAACTCACTCTTTCTTCTTGCACTGCTCTTAAATA  700
      |||||||||||| |||||||||||||||||||||||||||||||||||| 
seq2  GCACTGACTCCCGAGTAACTCACTCTTTCTTCTTGCACTGCTCTTAAATC  699

seq1  GACCCCCTTTCCTGTCTATTCTCATGAGAGTTG-GACATACTCTATCTAT  749
      ||||||||||||||||||||||||| | ||||| ||||||||||||||||
seq2  GACCCCCTTTCCTGTCTATTCTCATAATAGTTGAGACATACTCTATCTAT  749

seq1  GACTCATTTGTCTGCTCCTCAATT  773
      |||||||||||| |||||||||||
seq2  GACTCATTTGTCGGCTCCTCAATT  773

seq1: chr1_143287449_143288017
seq2: B6Ng01-196N13.g_62_631 (reverse)

seq1  GGCCCTGGCGTTCCCCTGTACTGGGGCATATACAGTTTGCGTGTCCAATG  50
      ||||| |||||||||||||||||||||| |||||||||||||||||||||
seq2  GGCCCCGGCGTTCCCCTGTACTGGGGCAGATACAGTTTGCGTGTCCAATG  50

seq1  GGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATACATATGC  100
        ||||||||| |||||||||| || ||||||||||||| ||||||||||
seq2  TCCCTCTCTTTTCAGTGATGGCAGAGTAGGCCATCTTTTTATACATATGC  100

seq1  AGCTAGAGTCAAGAGCTCTGGGGTACTGGTTAGTTCATAATGTTGTTCCA  150
      ||||||||||||||||| || ||| |||||||||||||||||||||||||
seq2  AGCTAGAGTCAAGAGCTGTGCGGTCCTGGTTAGTTCATAATGTTGTTCCA  150

seq1  CCTATAGGGTTGCAGATCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCC  200
      |||||||||  ||||||||||| |||||||||||||||||||||||||||
seq2  CCTATAGGGGAGCAGATCCCTTGAGCTCCTTGGGTACTTTCTCTAGCTCC  200

seq1  TCCATTGGGAGCCCCGTGATCCATCCAATAGCTGAGTGTGAGCATCCACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTGGGAGCCCCGTGATCCATCCAATAGCTGAGTGTGAGCATCCACT  250

seq1  TCTGTGTTTGCTAGGGATTTAAATTGTCATTGCATGCATATGTGTATATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTTTGCTAGGGATTTAAATTGTCATTGCATGCATATGTGTATATG  300

seq1  TGTGTGTATATGTATTCCTATACATAATCTAC-TCAGTCTCTATACTGTT  349
      |||||||||||||||||||||||||||||||| ||||||||||| |||||
seq2  TGTGTGTATATGTATTCCTATACATAATCTACATCAGTCTCTATTCTGTT  350

seq1  ACTGGAGGAATTTTGAATCCTTCTTTTTGCTTCTCTAATGATGTTAGGTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAGGAATTTTGAATCCTTCTTTTTGCTTCTCTAATGATGTTAGGTT  400

seq1  CTGAAAAATATCCCTGTTGTTATCTCCTGACAATAGTTTTAAATACATTT  449
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAATATCCCTGTTGTTATCTCCTGACAATAGTTTTAAATACATTT  450

seq1  TCAATATATGCTACTTCTTGGGATTCCAATTTACTGATTTTTCTTAATAC  499
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TCAATATATGTTACTTCTTGGGATTCCAATTTACTGATTTTTCTTAATAC  500

seq1  CATTCCGAAAAATACTATTAGTGAATGTTTAAATCGAATAAGTATTTGAC  549
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CATTCCGAAAAATACTATTAGTGAATGTTTAAATGGAATAAGTATTTGAC  550

seq1  TCCACTTTTTCTTTGAATTC  569
      ||||||||||||  ||||||
seq2  TCCACTTTTTCTGGGAATTC  570