BAC Information

Click to search

BAC

Clone NameB6Ng01-197C03
Chromosome1 (Build37)
Map Location 131,453,027 - 131,454,169
singlet/doubletsinglet
Overlap geneThsd7b
Upstream geneCxcr4, LOC100042732
Downstream geneLOC100042745, LOC100042740, Daf2, Cd55
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-197C03.bB6Ng01-197C03.g
ACCGA019080GA019081
length1,128823
definitionB6Ng01-197C03.b B6Ng01-197C03.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaagtatactgacaaccatgacaattctatcactgaaaaaagctc
atacaattactgttactgaaggaacattttaatccagcatgatttagagt
ttggagtagaaatactttaaatgtctgatcttccacttcagcgaggattc
tccaacttaatcatgaagagtttgtacaaaagacagctgcattaccactg
aagaccttgcacttgattgtcttttgataacaaagttctttgaaggaaat
ttgtgggaaaaaaaatatccgtgtaagttatgaaacatgtctcttttacg
agatgctgacagctgggctttagtcttgaagggaaggttagcaaattaat
aggaaagcctgaacagtcgattctttaactgtccaaatgcaacttgttat
tcagagtgtatcatattgttcaatgagtccagtacctgtgtggcattcag
gtaattatgaaatgttggagaaccaaacccaaagcccttttaaatgacat
cggagatgtgtatgtcagccacagctctctgagacctctgggtgctggca
gctcctgatccctgctgtgtccacagggttcatgatggatggctgtactg
ttctcattagcacatttaaaaggatgttttgggatctctcacattctcca
aagtcaactcctttaaataacaaagcgaagtatatgcttttccaacataa
caatgctgcatataccacctaggtatatgcactttagccaagctcataca
agcctcaaagcattcagcattaaatttcacagcgctgagacagatttacc
ctagcctctagtaattctgcttgaaaacaccttcatgacaatccttgtaa
tttcaggttttttttttttttcatagtagatttcttttggtgactttatg
tcagcccattcccatttttaagacatatcttctatactcagttctctgcc
ctgactcaggagggctccatagcatgtgacctggcttgtcagggcaggat
tggattaccttcatgatctctggggatttggggacaggtttaaagattag
agtcggcctctgctatctcaatacaacataaacttcagtgatagacacag
ggtatagattgtttggagtcaaggcatg

gaattcaaaacaaaatgtgtatgatcaaagtgcttaagcttatagaaatg
cttgcccaggtgaggctcccctgaagccctgattctgagcacataacata
tacacttcacaatgtgtgggctgacatggcacacagggctgaagaaagct
gcctggaacccctggctcatgcatgagactactatatgctatgaatggta
gtgggatttatttacatgcctgtgcatgtgcacatgcatacaaattttct
tcttttgtagaaatgcaatggtctatataaggaaaaggtggacttaatag
ttttctatcaacatttcccagcatgtaggcttcaagtcagtgtgtctttg
gattacaatgtattagaattgcctttattttaatttttttaaatgtgagt
tgctgacttgagattcatatatatatatatatataacatatatatatata
tatatatatatatatatatatatataacatatatatatatatatatatat
atatatatatatatatatatatatatatatattcaatacattttggtatg
ggattaggaaaaacttattttccagcaatttctgtactagttgaaatgat
atctaataaaacatagatttaaacatatattttaatgtatttatgaaaac
aatgacagtctcagcattgacagttatagtattaaagtatcaaatgtatt
agaaaaatatagagatgtccatgcatcctacagtctacagccttcagcct
atatttatttctctatgcaactattcccatccatctcattagtatgcaaa
tttggtttgtctctaaatgtaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_131453027_131454169
seq2: B6Ng01-197C03.b_41_1168

seq1  GAATTCAAGTATACTGACAACCATGACAATTCTATCACTGAAAAAAGCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTATACTGACAACCATGACAATTCTATCACTGAAAAAAGCTC  50

seq1  ATACAATTACTGTTACTGAAGGAACATTTTAATCCAGCATGATTTAGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAATTACTGTTACTGAAGGAACATTTTAATCCAGCATGATTTAGAGT  100

seq1  TTGGAGTAGAAATACTTTAAATGTCTGATCTTCCACTTCAGCGAGGATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGTAGAAATACTTTAAATGTCTGATCTTCCACTTCAGCGAGGATTC  150

seq1  TCCAACTTAATCATGAAGAGTTTGTACAAAAGACAGCTGCATTACCACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACTTAATCATGAAGAGTTTGTACAAAAGACAGCTGCATTACCACTG  200

seq1  AAGACCTTGCACTTGATTGTCTTTTGATAACAAAGTTCTTTGAAGGAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCTTGCACTTGATTGTCTTTTGATAACAAAGTTCTTTGAAGGAAAT  250

seq1  TTGTGGGAAAAAAAATATCCGTGTAAGTTATGAAACATGTCTCTTTTACG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGGAAAAAAAATATCCGTGTAAGTTATGAAACATGTCTCTTTTACG  300

seq1  AGATGCTGACAGCTGGGCTTTAGTCTTGAAGGGAAGGTTAGCAAATTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTGACAGCTGGGCTTTAGTCTTGAAGGGAAGGTTAGCAAATTAAT  350

seq1  AGGAAAGCCTGAACAGTCGATTCTTTAACTGTCCAAATGCAACTTGTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGCCTGAACAGTCGATTCTTTAACTGTCCAAATGCAACTTGTTAT  400

seq1  TCAGAGTGTATCATATTGTTCAATGAGTCCAGTACCTGTGTGGCATTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGTGTATCATATTGTTCAATGAGTCCAGTACCTGTGTGGCATTCAG  450

seq1  GTAATTATGAAATGTTGGAGAACCAAACCCAAAGCCCTTTTAAATGACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTATGAAATGTTGGAGAACCAAACCCAAAGCCCTTTTAAATGACAT  500

seq1  CGGAGATGTGTATGTCAGCCACAGCTCTCTGAGACCTCTGGGTGCTGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGATGTGTATGTCAGCCACAGCTCTCTGAGACCTCTGGGTGCTGGCA  550

seq1  GCTCCTGATCCCTGCTGTGTCCACAGGGTTCATGATGGATGGCTGTACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTGATCCCTGCTGTGTCCACAGGGTTCATGATGGATGGCTGTACTG  600

seq1  TTCTCATTAGCACATTTAAAAGGATGTTTTGGGATCTCTCACATTCTCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCATTAGCACATTTAAAAGGATGTTTTGGGATCTCTCACATTCTCCA  650

seq1  AAGTCAACTCCTTTAAATAACAAAGCGAAGTATATGCTTTTCCAACATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAACTCCTTTAAATAACAAAGCGAAGTATATGCTTTTCCAACATAA  700

seq1  CAATGCTGCATATACCACCTAGGTATATGCACTTTAGCCAAGCTCATACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCTGCATATACCACCTAGGTATATGCACTTTAGCCAAGCTCATACA  750

seq1  AGCCTCAAAGCATTCAGCATTAAATTTCACAGCGCTGAGACAGATTTACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCAAAGCATTCAGCATTAAATTTCACAGCGCTGAGACAGATTTACC  800

seq1  CTAGCCTCTAGTAATTCTGCTTGAAAACACCTTCATGACAATCCTTGTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCTCTAGTAATTCTGCTTGAAAACACCTTCATGACAATCCTTGTAA  850

seq1  TTTCAGGTTTTTTTTTTTTTTCATAGTAGATTTCTTTTGGTGACTTTATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGTTTTTTTTTTTTTTCATAGTAGATTTCTTTTGGTGACTTTATG  900

seq1  TCAGCCCATTCCCATTTTTAAGACATATCTTCTATACTCAGTTCTCTGCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCCATTCCCATTTTTAAGACATATCTTCTATACTCAGTTCTCTGCC  950

seq1  CTGACTCAAGGAGGGCTCCATAAGCATGTGACCTGCCTTGTCAGGGCAGG  1000
      ||||||| ||||||||||||| ||||||||||||| |||||||||||| |
seq2  CTGACTC-AGGAGGGCTCCAT-AGCATGTGACCTGGCTTGTCAGGGCA-G  997

seq1  GATTGGGATAACCTCATGATCTCTTGGGATTTGGGGGGACAGGGTTTAAA  1050
      ||||||  || | ||||||||||| |||||||  ||||||| ||||||||
seq2  GATTGGATTACCTTCATGATCTCTGGGGATTT--GGGGACA-GGTTTAAA  1044

seq1  GA-TAGAGTCGGCCTCTGCTAATCTCAATACAACATAAACTTTCAGTGAT  1099
      || ||||||||||||||||| ||||||||||||||||||| |||||||||
seq2  GATTAGAGTCGGCCTCTGCT-ATCTCAATACAACATAAAC-TTCAGTGAT  1092

seq1  AGACCACCAGGGTTTATTAGATTGTTTGGAAGTCAGAGGGCATG  1143
      ||||   ||||||    |||||||||||| ||||  | ||||||
seq2  AGAC--ACAGGGT---ATAGATTGTTTGG-AGTC--AAGGCATG  1128


| Home | SequenceCutter | Blast | Download |