BAC Information

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BAC

Clone NameB6Ng01-197F10
Chromosome1 (Build37)
Map Location 48,377,634 - 48,504,784
singlet/doubletdoublet
Overlap genenone
Upstream geneEG227061, LOC666869, LOC546734
Downstream geneLOC674566, LOC100041936, LOC666903, LOC666909, 2900045O20Rik, LOC666924, C230029F24Rik, LOC627430
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-197F10.bB6Ng01-197F10.g
ACCGA019229GA019230
length1,080653
definitionB6Ng01-197F10.b B6Ng01-197F10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,503,696 - 48,504,784)(48,377,634 - 48,378,286)
sequence
gaattcttttagtactattaatttccagttcccttaaatgtttttatctt
aaggataatttctttgacttaaattcaaattaagttattttaatatctac
tcagttttaatactcatactgaaataaagactttttacaatatttgtttt
taaagtgctgtttcatgtttgaactaactgttggaatgacctcttttaaa
atacaataagtcactatgacattaccagtctattttcagtcacatttcct
atttaatcatataagcccaagttcctcataatgacaaccatcatgttaat
ggagatgtggggttcattttggaaattagctacaggcctgctttctgcac
agaaggccagaacatgaatttattagcctatgcagagtgataattagaat
tgatatccatttatgctaaatcataaaaataaactcagtgatttaaacaa
acaagtaatattgcagttttgaatgaacacactgtcaaaattaactgtgc
ctgtcattaactgttattttattattttgttttatatatgtttttatttt
attatgatatatacatatataaatatatacatatgtatgtatgtatatat
atatatatatatccctctatgacataaatatttccacttagactttctga
aataaagtctagtataattaaatgttgtaaattacattaatctttaaaag
tttatgagatattatctaggtttccaacagattacaacatttttataata
gtgttgataattatagggatagtagtgtgcatatctataaaaactaatat
cttccatcattgaatctttagtccagttgatctgcaatgctgaatttccc
acataatttccaaaaatgccaaaatcagtccccagaagtctttgtaggaa
aagaaaatcaaaccttgcacagccaaagcttaaagggccttttcagatat
tctaccactaatgtgaataaaaatccagttcaaataatcaatttgaacct
cagaaactgtcttaattcttctgggaaaacacttcagaaaatatgagtca
gtatgcaaattctgtcgatgatcgtatcac

gaattcttcagatgaaatgaaagggtgacctacagaatcttttaaaccca
cattttctttgttaagaccacagagaattatagatggattcaaagttaaa
tattggtagtgactgttgactgaagaacttataagttaagattttggagg
caagtggaaactttgtaaaatgaaaactccaaagaatctgtgagagtaac
cctagcaaagactcgtagtaatggggtacacatagcctgaacttcttcta
taaccaggcaaagcctcaattggaggcattggaacaccaaacgagctaca
aagcattcaatctacaatttgttcttcctacagagtgtccagggactaga
gtttagcagaaacatcattaaagaaaaattgtctcatatgaggctatgcc
agtgcctggcaaatacagaagtggatgctgacagtcagctattggatgga
acacagagcccccaaaggaggagctagagaaagtacccaaggagctgaag
gggtctgcaaccctataagaggaacaacaatatgaactaatcagtacccc
cagagcttgtgtctctagctgcatatgtagcaaagatggcctagttggcc
ctcattgggaagagaggcccctaggtcctgtaaactttatatggcccagt
aag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_48503696_48504784
seq2: B6Ng01-197F10.b_45_1124 (reverse)

seq1  GTGATACGATTCCTTCTGACAGAATTTTGCATTCTGACTCATATTTTTCT  50
      ||||||||||  | || ||||||| ||||||| |||||||||| ||||||
seq2  GTGATACGAT--CATC-GACAGAA-TTTGCATACTGACTCATA-TTTTCT  45

seq1  GAAGTGTTTTTCCCAGAAGATTTTAGACAGTTTCTGAGGTTCAAAATTTG  100
      |||||| ||||||||||||| || |||||||||||||||||||||  |||
seq2  GAAGTG-TTTTCCCAGAAGAATTAAGACAGTTTCTGAGGTTCAAA--TTG  92

seq1  ATTATTTGAACTGGATTTTTATTCACATTAGT-GTAGAATTATCTGAAAA  149
      |||||||||||||||||||||||||||||||| |||||| ||||||||||
seq2  ATTATTTGAACTGGATTTTTATTCACATTAGTGGTAGAA-TATCTGAAAA  141

seq1  GGCCCTTTAAGCTTTGGCTGTGCAAGGTTTGATTTTTCTTTTCCTACAAA  199
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GGCCCTTTAAGCTTTGGCTGTGCAAGGTTTGA-TTTTCTTTTCCTACAAA  190

seq1  GACTTCTGGGGACTGATTTTGGCATTTTTGGAAATTATGTGGGAAATTCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCTGGGGACTGATTTTGGCATTTTTGGAAATTATGTGGGAAATTCA  240

seq1  GCATTGCAGATCAACTGGACTAAAGATTCAATGATGGAAGATATTAGTTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGCAGATCAACTGGACTAAAGATTCAATGATGGAAGATATTAGTTT  290

seq1  TTATAGATATGCACACTACTATCCCTATAATTATCAACACTATTATAAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGATATGCACACTACTATCCCTATAATTATCAACACTATTATAAAA  340

seq1  ATGTTGTAATCTGTTGGAAACCTAGATAATATCTCATAAACTTTTAAAGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGTAATCTGTTGGAAACCTAGATAATATCTCATAAACTTTTAAAGA  390

seq1  TTAATGTAATTTACAACATTTAATTATACTAGACTTTATTTCAGAAAGTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGTAATTTACAACATTTAATTATACTAGACTTTATTTCAGAAAGTC  440

seq1  TAAGTGGAAATATTTATGTCATAGAGGGATATATATATATATATATACAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGGAAATATTTATGTCATAGAGGGATATATATATATATATATACAT  490

seq1  ACATACATATGTATATATTTATATATGTATATATCATAATAAAATAAAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACATATGTATATATTTATATATGTATATATCATAATAAAATAAAAA  540

seq1  CATATATAAAACAAAATAATAAAATAACAGTTAATGACAGGCACAGTTAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATAAAACAAAATAATAAAATAACAGTTAATGACAGGCACAGTTAA  590

seq1  TTTTGACAGTGTGTTCATTCAAAACTGCAATATTACTTGTTTGTTTAAAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGACAGTGTGTTCATTCAAAACTGCAATATTACTTGTTTGTTTAAAT  640

seq1  CACTGAGTTTATTTTTATGATTTAGCATAAATGGATATCAATTCTAATTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGTTTATTTTTATGATTTAGCATAAATGGATATCAATTCTAATTA  690

seq1  TCACTCTGCATAGGCTAATAAATTCATGTTCTGGCCTTCTGTGCAGAAAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCTGCATAGGCTAATAAATTCATGTTCTGGCCTTCTGTGCAGAAAG  740

seq1  CAGGCCTGTAGCTAATTTCCAAAATGAACCCCACATCTCCATTAACATGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCTGTAGCTAATTTCCAAAATGAACCCCACATCTCCATTAACATGA  790

seq1  TGGTTGTCATTATGAGGAACTTGGGCTTATATGATTAAATAGGAAATGTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGTCATTATGAGGAACTTGGGCTTATATGATTAAATAGGAAATGTG  840

seq1  ACTGAAAATAGACTGGTAATGTCATAGTGACTTATTGTATTTTAAAAGAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAAATAGACTGGTAATGTCATAGTGACTTATTGTATTTTAAAAGAG  890

seq1  GTCATTCCAACAGTTAGTTCAAACATGAAACAGCACTTTAAAAACAAATA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTCCAACAGTTAGTTCAAACATGAAACAGCACTTTAAAAACAAATA  940

seq1  TTGTAAAAAGTCTTTATTTCAGTATGAGTATTAAAACTGAGTAGATATTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAAAAGTCTTTATTTCAGTATGAGTATTAAAACTGAGTAGATATTA  990

seq1  AAATAACTTAATTTGAATTTAAGTCAAAGAAATTATCCTTAAGATAAAAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACTTAATTTGAATTTAAGTCAAAGAAATTATCCTTAAGATAAAAA  1040

seq1  CATTTAAGGGAACTGGAAATTAATAGTACTAAAAGAATTC  1089
      ||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAAGGGAACTGGAAATTAATAGTACTAAAAGAATTC  1080


seq1: chr1_48377634_48378286
seq2: B6Ng01-197F10.g_67_719

seq1  GAATTCTTCAGATGAAATGAAAGGGTGACCTACAGAATCTTTTAAACCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAGATGAAATGAAAGGGTGACCTACAGAATCTTTTAAACCCA  50

seq1  CATTTTCTTTGTTAAGACCACAGAGAATTATAGATGGATTCAAAGTTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCTTTGTTAAGACCACAGAGAATTATAGATGGATTCAAAGTTAAA  100

seq1  TATTGGTAGTGACTGTTGACTGAAGAACTTATAAGTTAAGATTTTGGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGTAGTGACTGTTGACTGAAGAACTTATAAGTTAAGATTTTGGAGG  150

seq1  CAAGTGGAAACTTTGTAAAATGAAAACTCCAAAGAATCTGTGAGAGTAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGGAAACTTTGTAAAATGAAAACTCCAAAGAATCTGTGAGAGTAAC  200

seq1  CCTAGCAAAGACTCGTAGTAATGGGGTACACATAGCCTGAACTTCTTCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCAAAGACTCGTAGTAATGGGGTACACATAGCCTGAACTTCTTCTA  250

seq1  TAACCAGGCAAAGCCTCAATTGGAGGCATTGGAACACCAAACGAGCTACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAGGCAAAGCCTCAATTGGAGGCATTGGAACACCAAACGAGCTACA  300

seq1  AAGCATTCAATCTACAATTTGTTCTTCCTACAGAGTGTCCAGGGACTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTCAATCTACAATTTGTTCTTCCTACAGAGTGTCCAGGGACTAGA  350

seq1  GTTTAGCAGAAACATCATTAAAGAAAAATTGTCTCATATGAGGCTATGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGCAGAAACATCATTAAAGAAAAATTGTCTCATATGAGGCTATGCC  400

seq1  AGTGCCTGGCAAATACAGAAGTGGATGCTGACAGTCAGCTATTGGATGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCTGGCAAATACAGAAGTGGATGCTGACAGTCAGCTATTGGATGGA  450

seq1  ACACAGAGCCCCCAAAGGAGGAGCTAGAGAAAGTACCCAAGGAGCTGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAGCCCCCAAAGGAGGAGCTAGAGAAAGTACCCAAGGAGCTGAAG  500

seq1  GGGTCTGCAACCCTATAAGAGGAACAACAATATGAACTAATCAGTACCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTGCAACCCTATAAGAGGAACAACAATATGAACTAATCAGTACCCC  550

seq1  CAGAGCTTGTGTCTCTAGCTGCATATGTAGCAAAGATGGCCTAGTTGGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCTTGTGTCTCTAGCTGCATATGTAGCAAAGATGGCCTAGTTGGCC  600

seq1  CTCATTGGGAAGAGAGGCCCCTAGGTCCTGTAAACTTTATATGGCCCAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTGGGAAGAGAGGCCCCTAGGTCCTGTAAACTTTATATGGCCCAGT  650

seq1  AAG  653
      |||
seq2  AAG  653


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