BAC Information

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BAC

Clone NameB6Ng01-197I03
Chromosome1 (Build37)
Map Location 49,901,710 - 50,031,355
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC666909, 2900045O20Rik, LOC666924, C230029F24Rik, LOC627430, LOC100041981
Downstream geneEG666962, EG666970, LOC100041993, Tmeff2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-197I03.bB6Ng01-197I03.g
ACCGA019351GA019352
length1,131926
definitionB6Ng01-197I03.b B6Ng01-197I03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,030,219 - 50,031,355)(49,901,710 - 49,902,561)
sequence
gaattcagtcagcatttagatactgacaatagtagtatttgattggcaaa
ttgaagaataattttcacatcattacttattccactgaacttgccagccc
gaactgcatgggacttggcaatagttcatgaaaataaaggaaccccaagt
atatccaactttcagaaggacggttgaatatatatagatattattataaa
gtggagggaaaggtgaaactaacaaggacaaataaattctctgctatttc
acaatgctaaaagcaaacattaataagataaaatcagaaagtataatcaa
agtcaaagtttgcccacaacctaaaacaaaatccagtaaaaatataaata
ttctgtgataagaaattaagttaaaataagaaatattttattattgttat
aaaatagataaaaatcttagcacaatgagatgttttatttttaaccccat
ctctcaaagacaagccaactcagaacagactcacctggaagtctgaccac
ctgcaacctgcttctatgattaaaagacctcatcagtctggttttatggt
tttgagaggcaaccaaatgttctcagcaggagtgcaggagaatagtgttt
tctgttatcccataaaccattagcatatttgcttacacttttccatttca
tcttattgcttacacttttccatttcatcttattgcttacacttttccat
ttcatcttatacttatgtttactttctgtatttcacttttaatactttat
ttttattctactttgacttaatgtactggctagttttgtgtcaacttgac
acagctggagttatcacagagaaaggagcttcagttgaggaaatgcctcc
atgagatccaactgtaaggcattttctcaattagtgatcaagggggaaag
gccccttgtgggtgggaccatctctgggctggtagtcttggttttataag
agagcagctgagcaagccaggggaggcaagccagtaaagaacatccctcc
atggcctctgcatcagctcctgctccctgacctgcttgagttcagtctga
ctccttggtgatgaacagcagtatgaagtgtagccaaataaacccttttc
cctccccacttgcttcttgttattgatgttg

gaattcactcttgcacctgcacacaatgcttgtttactagttaggcacag
caggagccagcaccatcttataatggcaattacttatggctctccacaca
ctggatttctacattcatttacatataacatatgcatatttatagtagcc
tactttaattaaaattttgatttttcaatctttgagagaggaaaaagtct
taatattagtttctctagatattataaaaataaacagatatacaacagat
taactaatggaagtatatagataatctcagcttttccattacttttgcag
gtgtcaaaaataatcaaaaaaagacaaattatggttttattagatacaag
atttaattgagtagttttttttttaaatgtgcctatagagataaggatta
atttaacaggatttgtttcttgagtttctctagtacttaatacccatctt
ggtgccctttggatttgtacctgcaaccagaacaggcctaggactctggc
tccccatctgctctgacaacatgcagaggaagcttgattcccatgagctc
tgacacacccaggatcacaggtgatgccacaacatctgctccaatatcca
gcataactgggaaccctgggacccagacaacacaaaaacccacactgagc
cagaggcacacatttttccattttgcacatgcatctggagaggacccagg
cctgcgtctccccacccatattcaaacttgcttcaaaggaactctgaaac
ttcagggtctcaggatctcaggatctcagaggtaccttgactcccaggat
ctctgacacatccaggatatcaggatcaaaatcacagaatcaaagtgaca
gatgaactcccaggagttctgatacaaccaggatcacaggactacaggat
cacaggctcatgggaaggacaggctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_50030219_50031355
seq2: B6Ng01-197I03.b_46_1176 (reverse)

seq1  CAACATCATGACCAAGAAGCAAGTTGGGGAGG--AAAGGGTTTATTTGGC  48
      ||||||||  | ||||||||||| ||||||||  ||||||||||||||||
seq2  CAACATCAATAACAAGAAGCAAG-TGGGGAGGGAAAAGGGTTTATTTGGC  49

seq1  TTACACTTCCATACTGCTGTTCATCACCAAAGGAAGTCAGGACTGGAACT  98
       ||||||| |||||||||||||||||||||  | ||||| |||| |||||
seq2  -TACACTT-CATACTGCTGTTCATCACCAA--GGAGTCA-GACT-GAACT  93

seq1  CAAGCAGGTCAGGGAGCAGGAGCTGATGCAGAGGCCATGGAGGGATGTTC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAGGTCAGGGAGCAGGAGCTGATGCAGAGGCCATGGAGGGATGTTC  143

seq1  TTTACTGGCTTGCCTCCCCTGGCTTGCTCAGCCTGCTCTCTTATAAAACC  198
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTTACTGGCTTGCCTCCCCTGGCTTGCTCAG-CTGCTCTCTTATAAAACC  192

seq1  AAGACTACCAGCCCAGAGATGGTCCCACCCACAAGGGGCCTTTCCCCCTT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTACCAGCCCAGAGATGGTCCCACCCACAAGGGGCCTTTCCCCCTT  242

seq1  GATCACTAATTGAGAAAATGCCTTACAGTTGGATCTCATGGAGGCATTTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACTAATTGAGAAAATGCCTTACAGTTGGATCTCATGGAGGCATTTC  292

seq1  CTCAACTGAAGCTCCTTTCTCTGTGATAACTCCAGCTGTGTCAAGTTGAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACTGAAGCTCCTTTCTCTGTGATAACTCCAGCTGTGTCAAGTTGAC  342

seq1  ACAAAACTAGCCAGTACATTAAGTCAAAGTAGAATAAAAATAAAGTATTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACTAGCCAGTACATTAAGTCAAAGTAGAATAAAAATAAAGTATTA  392

seq1  AAAGTGAAATACAGAAAGTAAACATAAGTATAAGATGAAATGGAAAAGTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGAAATACAGAAAGTAAACATAAGTATAAGATGAAATGGAAAAGTG  442

seq1  TAAGCAATAAGATGAAATGGAAAAGTGTAAGCAATAAGATGAAATGGAAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAATAAGATGAAATGGAAAAGTGTAAGCAATAAGATGAAATGGAAA  492

seq1  AGTGTAAGCAAATATGCTAATGGTTTATGGGATAACAGAAAACACTATTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTAAGCAAATATGCTAATGGTTTATGGGATAACAGAAAACACTATTC  542

seq1  TCCTGCACTCCTGCTGAGAACATTTGGTTGCCTCTCAAAACCATAAAACC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCACTCCTGCTGAGAACATTTGGTTGCCTCTCAAAACCATAAAACC  592

seq1  AGACTGATGAGGTCTTTTAATCATAGAAGCAGGTTGCAGGTGGTCAGACT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGATGAGGTCTTTTAATCATAGAAGCAGGTTGCAGGTGGTCAGACT  642

seq1  TCCAGGTGAGTCTGTTCTGAGTTGGCTTGTCTTTGAGAGATGGGGTTAAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGTGAGTCTGTTCTGAGTTGGCTTGTCTTTGAGAGATGGGGTTAAA  692

seq1  AATAAAACATCTCATTGTGCTAAGATTTTTATCTATTTTATAACAATAAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAACATCTCATTGTGCTAAGATTTTTATCTATTTTATAACAATAAT  742

seq1  AAAATATTTCTTATTTTAACTTAATTTCTTATCACAGAATATTTATATTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTTCTTATTTTAACTTAATTTCTTATCACAGAATATTTATATTT  792

seq1  TTACTGGATTTTGTTTTAGGTTGTGGGCAAACTTTGACTTTGATTATACT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGGATTTTGTTTTAGGTTGTGGGCAAACTTTGACTTTGATTATACT  842

seq1  TTCTGATTTTATCTTATTAATGTTTGCTTTTAGCATTGTGAAATAGCAGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGATTTTATCTTATTAATGTTTGCTTTTAGCATTGTGAAATAGCAGA  892

seq1  GAATTTATTTGTCCTTGTTAGTTTCACCTTTCCCTCCACTTTATAATAAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTATTTGTCCTTGTTAGTTTCACCTTTCCCTCCACTTTATAATAAT  942

seq1  ATCTATATATATTCAACCGTCCTTCTGAAAGTTGGATATACTTGGGGTTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATATATATTCAACCGTCCTTCTGAAAGTTGGATATACTTGGGGTTC  992

seq1  CTTTATTTTCATGAACTATTGCCAAGTCCCATGCAGTTCGGGCTGGCAAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTTTCATGAACTATTGCCAAGTCCCATGCAGTTCGGGCTGGCAAG  1042

seq1  TTCAGTGGAATAAGTAATGATGTGAAAATTATTCTTCAATTTGCCAATCA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGGAATAAGTAATGATGTGAAAATTATTCTTCAATTTGCCAATCA  1092

seq1  AATACTACTATTGTCAGTATCTAAATGCTGACTGAATTC  1137
      |||||||||||||||||||||||||||||||||||||||
seq2  AATACTACTATTGTCAGTATCTAAATGCTGACTGAATTC  1131


seq1: chr1_49901710_49902561
seq2: B6Ng01-197I03.g_64_915

seq1  GAATTCACTCTTGCACCTGCACACAATGCTTGTTTACTAGTTAGGCACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTTGCACCTGCACACAATGCTTGTTTACTAGTTAGGCACAG  50

seq1  CAGGAGCCAGCACCATCTTATAATGGCAATTACTTATGGCTCTCCACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGCCAGCACCATCTTATAATGGCAATTACTTATGGCTCTCCACACA  100

seq1  CTGGATTTCTACATTCATTTACATATAACATATGCATATTTATAGTAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATTTCTACATTCATTTACATATAACATATGCATATTTATAGTAGCC  150

seq1  TACTTTAATTAAAATTTTGATTTTTCAATCTTTGAGAGAGGAAAAAGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTAATTAAAATTTTGATTTTTCAATCTTTGAGAGAGGAAAAAGTCT  200

seq1  TAATATTAGTTTCTCTAGATATTATAAAAATAAACAGATATACAACAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTAGTTTCTCTAGATATTATAAAAATAAACAGATATACAACAGAT  250

seq1  TAACTAATGGAAGTATATAGATAATCTCAGCTTTTCCATTACTTTTGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAATGGAAGTATATAGATAATCTCAGCTTTTCCATTACTTTTGCAG  300

seq1  GTGTCAAAAATAATCAAAAAAAGACAAATTATGGTTTTATTAGATACAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCAAAAATAATCAAAAAAAGACAAATTATGGTTTTATTAGATACAAG  350

seq1  ATTTAATTGAGTAGTTTTTTTTTTAAATGTGCCTATAGAGATAAGGATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATTGAGTAGTTTTTTTTTTAAATGTGCCTATAGAGATAAGGATTA  400

seq1  ATTTAACAGGATTTGTTTCTTGAGTTTCTCTAGTACTTAATACCCATCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAACAGGATTTGTTTCTTGAGTTTCTCTAGTACTTAATACCCATCTT  450

seq1  GGTGCCCTTTGGATTTGTACCTGCAACCAGAACAGGCCTAGGACTCTGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCCTTTGGATTTGTACCTGCAACCAGAACAGGCCTAGGACTCTGGC  500

seq1  TCCCCATCTGCTCTGACAACATGCAGAGGAAGCTTGATTCCCATGAGCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCATCTGCTCTGACAACATGCAGAGGAAGCTTGATTCCCATGAGCTC  550

seq1  TGACACACCCAGGATCACAGGTGATGCCACAACATCTGCTCCAATATCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACACCCAGGATCACAGGTGATGCCACAACATCTGCTCCAATATCCA  600

seq1  GCATAACTGGGAACCCTGGGACCCAGACAACACAAAAACCCACACTGAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAACTGGGAACCCTGGGACCCAGACAACACAAAAACCCACACTGAGC  650

seq1  CAGAGGCACACATTTTTCCATTTTGCACATGCATCTGGAGAGGACCCAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCACACATTTTTCCATTTTGCACATGCATCTGGAGAGGACCCAGG  700

seq1  CCTGCGTCTCCCCACCCATATTCAAACTTGCTTCAAAGGAACTCTGAAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCGTCTCCCCACCCATATTCAAACTTGCTTCAAAGGAACTCTGAAAC  750

seq1  TTCAGGGTCTCAGGATCTCAGGATCTCAGAGGTACCTTGACTCCCAGGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGGTCTCAGGATCTCAGGATCTCAGAGGTACCTTGACTCCCAGGAT  800

seq1  CTCTGACACATCCAGGATATCAGGATCAAAATCACAGAATCAAAGTGACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGACACATCCAGGATATCAGGATCAAAATCACAGAATCAAAGTGACA  850

seq1  GA  852
      ||
seq2  GA  852


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