BAC Information

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BAC

Clone NameB6Ng01-197M04
Chromosome1 (Build37)
Map Location 19,501,166 - 19,632,263
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC383499, EG435611, LOC100040189, Tcfap2d, LOC100040413, Tcfap2b, LOC100040198, LOC226901
Downstream genePkhd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-197M04.bB6Ng01-197M04.g
ACCGA019542GA019543
length885631
definitionB6Ng01-197M04.b B6Ng01-197M04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,501,166 - 19,502,046)(19,631,635 - 19,632,263)
sequence
gaattcataccaggaagatgagattgcgtttacaatgccccatagactta
gtgttacagttgtcctgtgcccacgatatgtttgagataaaacttcatgc
acctttcacttaaagagaatctctatctgttttgtacttggtcattttct
caacagctacttctaagaaaatgggttctctagactttgattttgatctt
tagcatttaacagaccagtgaaatgcattttaacagatatttcttattct
aaaatagggaataattgggatatcccataagggagatgatatatgaagga
attaatcacagtaagtaacaaactataagaatatttctgtactcaaaata
ctcttctccttgtgaagtttgccctcaccatatttccagaaaacctttca
attcttctttatagaataagatagagtaaaacccatgactgattttcctg
atgcaacggtgaaatttgctccttttggaagcaaatgttctagttccgct
cagagattcagtctctgaaatcattctgaagactagatacttacattttt
actttttttttttcaatatttaatgacctttttttaacttcatagagaca
gtaagatttttagacaggattttgtctgttctttgagattcaaactaata
ttaagatatcacctacccatcctaaaggaaaggccattttcgcacttgtg
ttcacagtcggctttgctcacgtttacagatcctcttaagctgtgtactt
ccctttccctttatttcctttctcaatcaaaaacagcggtttcttttctt
caattttgagttctttctagtacgtaaatgctatttctcctatcctaggg
aaaatatgtgggatttttttttggggggggagggg

gaattcactgtggggtggggggcaggagaattgctaatcttgatatggtt
atgttttctctgagaacagctaatattgttttggtagttgcaagcttaat
catttggattgctaaaactatgtttttacatttgtttagtaagccagctt
ccttatttggctctgcacttggccttcaagtacagtttggaaagtccttt
gcaaaggggaaaggtaccgggtggtcttgaattcattttggttcttacac
cacaagacttagtataaatgacatagttctgaatattatttcaattgtag
cgtccaaatagacaatggtagaatcagttgagcaatcaggaggtaatcca
gtatttgagacagaggtgagggtctgagaagaaacagtgttgatagctca
agttcccaggaatgagggagacttagggtatattttgaaggcaaatttgg
aattgtagtaatgagaaaatggaattgtgcagaaatgagataacgaacga
aaatgaaaatgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagaga
gagagagagagagagagagagagaggagactgtaactatttaaagggtga
aagaggtcttcactttatgatcagatttcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_19501166_19502046
seq2: B6Ng01-197M04.b_34_918

seq1  GAATTCATACCAGGAAGATGAGATTGCGTTTACAATGCCCCATAGACTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATACCAGGAAGATGAGATTGCGTTTACAATGCCCCATAGACTTA  50

seq1  GTGTTACAGTTGTCCTGTGCCCACGATATGTTTGAGATAAAACTTCATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTACAGTTGTCCTGTGCCCACGATATGTTTGAGATAAAACTTCATGC  100

seq1  ACCTTTCACTTAAAGAGAATCTCTATCTGTTTTGTACTTGGTCATTTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTCACTTAAAGAGAATCTCTATCTGTTTTGTACTTGGTCATTTTCT  150

seq1  CAACAGCTACTTCTAAGAAAATGGGTTCTCTAGACTTTGATTTTGATCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGCTACTTCTAAGAAAATGGGTTCTCTAGACTTTGATTTTGATCTT  200

seq1  TAGCATTTAACAGACCAGTGAAATGCATTTTAACAGATATTTCTTATTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATTTAACAGACCAGTGAAATGCATTTTAACAGATATTTCTTATTCT  250

seq1  AAAATAGGGAATAATTGGGATATCCCATAAGGGAGATGATATATGAAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGGGAATAATTGGGATATCCCATAAGGGAGATGATATATGAAGGA  300

seq1  ATTAATCACAGTAAGTAACAAACTATAAGAATATTTCTGTACTCAAAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATCACAGTAAGTAACAAACTATAAGAATATTTCTGTACTCAAAATA  350

seq1  CTCTTCTCCTTGTGAAGTTTGCCCTCACCATATTTCCAGAAAACCTTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTCCTTGTGAAGTTTGCCCTCACCATATTTCCAGAAAACCTTTCA  400

seq1  ATTCTTCTTTATAGAATAAGATAGAGTAAAACCCATGACTGATTTTCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCTTTATAGAATAAGATAGAGTAAAACCCATGACTGATTTTCCTG  450

seq1  ATGCAACGGTGAAATTTGCTCCTTTTGGAAGCAAATGTTCTAGTTCCGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAACGGTGAAATTTGCTCCTTTTGGAAGCAAATGTTCTAGTTCCGCT  500

seq1  CAGAGATTCAGTCTCTGAAATCATTCTGAAGACTAGATACTTACATTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATTCAGTCTCTGAAATCATTCTGAAGACTAGATACTTACATTTTT  550

seq1  ACTTTTTTTTTTTCAATATTTAATGACCTTTTTTTAACTTCATAGAGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTTTTTTTCAATATTTAATGACCTTTTTTTAACTTCATAGAGACA  600

seq1  GTAAGATTTTTAGACAGGATTTTGTCTGTTCTTTGAGATTCAAACTAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGATTTTTAGACAGGATTTTGTCTGTTCTTTGAGATTCAAACTAATA  650

seq1  TTAAGATATCACCTACCCATCCTAAAGGAAAGGCCATTTTCGCACTTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGATATCACCTACCCATCCTAAAGGAAAGGCCATTTTCGCACTTGTG  700

seq1  TTCACAGTCGGCTTTGCTCACG-TTACAGATCCTCTTAAGCTGTGTACTT  749
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTCACAGTCGGCTTTGCTCACGTTTACAGATCCTCTTAAGCTGTGTACTT  750

seq1  CCCTTTCCCTTTATTTCCTTTCTCAATCAAAAACAGC-GTTTCTTTTCTT  798
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CCCTTTCCCTTTATTTCCTTTCTCAATCAAAAACAGCGGTTTCTTTTCTT  800

seq1  CAATTTTGAGTTCTTTCTAGTACGTAAATGCTATTTCTCCTATCCTTAGG  848
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CAATTTTGAGTTCTTTCTAGTACGTAAATGCTATTTCTCCTATCC-TAGG  849

seq1  GAAAATATGT-GGATTTTTTTT--GGGGGGGAGGGG  881
      |||||||||| |||||||||||  ||||||||||||
seq2  GAAAATATGTGGGATTTTTTTTTGGGGGGGGAGGGG  885


seq1: chr1_19631635_19632263
seq2: B6Ng01-197M04.g_64_694 (reverse)

seq1  AGGACATCTGATCAT-ATGTGATGACCTCTTTCA-CCTTTAAATAGTTAC  48
      |||| |||||||||| | |||| ||||||||||| |||||||||||||||
seq2  AGGAAATCTGATCATAAAGTGAAGACCTCTTTCACCCTTTAAATAGTTAC  50

seq1  AGTCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACA  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACA  100

seq1  CACACACACACACACACACACATTTTCATTTTCGTTCGTTATCTCATTTC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACATTTTCATTTTCGTTCGTTATCTCATTTC  150

seq1  TGCACAATTCCATTTTCTCATTACTACAATTCCAAATTTGCCTTCAAAAT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAATTCCATTTTCTCATTACTACAATTCCAAATTTGCCTTCAAAAT  200

seq1  ATACCCTAAGTCTCCCTCATTCCTGGGAACTTGAGCTATCAACACTGTTT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCTAAGTCTCCCTCATTCCTGGGAACTTGAGCTATCAACACTGTTT  250

seq1  CTTCTCAGACCCTCACCTCTGTCTCAAATACTGGATTACCTCCTGATTGC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCAGACCCTCACCTCTGTCTCAAATACTGGATTACCTCCTGATTGC  300

seq1  TCAACTGATTCTACCATTGTCTATTTGGACGCTACAATTGAAATAATATT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTGATTCTACCATTGTCTATTTGGACGCTACAATTGAAATAATATT  350

seq1  CAGAACTATGTCATTTATACTAAGTCTTGTGGTGTAAGAACCAAAATGAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACTATGTCATTTATACTAAGTCTTGTGGTGTAAGAACCAAAATGAA  400

seq1  TTCAAGACCACCCGGTACCTTTCCCCTTTGCAAAGGACTTTCCAAACTGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGACCACCCGGTACCTTTCCCCTTTGCAAAGGACTTTCCAAACTGT  450

seq1  ACTTGAAGGCCAAGTGCAGAGCCAAATAAGGAAGCTGGCTTACTAAACAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAAGGCCAAGTGCAGAGCCAAATAAGGAAGCTGGCTTACTAAACAA  500

seq1  ATGTAAAAACATAGTTTTAGCAATCCAAATGATTAAGCTTGCAACTACCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAAAACATAGTTTTAGCAATCCAAATGATTAAGCTTGCAACTACCA  550

seq1  AAACAATATTAGCTGTTCTCAGAGAAAACATAACCATATCAAGATTAGCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATATTAGCTGTTCTCAGAGAAAACATAACCATATCAAGATTAGCA  600

seq1  ATTCTCCTGCCCCCCACCCCACAGTGAATTC  629
      |||||||||||||||||||||||||||||||
seq2  ATTCTCCTGCCCCCCACCCCACAGTGAATTC  631


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