BAC Information

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BAC

Clone NameB6Ng01-198A24
Chromosome1 (Build37)
Map Location 177,811,230 - 177,956,321
singlet/doubletdoublet
Overlap geneExo1, Gm104, Pld5, B020018G12Rik
Upstream geneGrem2, Rgs7, Fh1, Kmo, Opn3, Chml, Wdr64
Downstream geneCep170, Sdccag8, LOC666235, Akt3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-198A24.bB6Ng01-198A24.g
ACCGA019757GA019758
length8721,176
definitionB6Ng01-198A24.b B6Ng01-198A24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(177,811,230 - 177,812,092)(177,955,784 - 177,956,321)
sequence
gaattccctttgtatatgctctctcctgtgcaggtttgaggagccacggc
gcctggaatggacttgtgtgctatgcctgttcgttcgggagacgggacta
aggtgaagccgctgctgctgttacctcgggtaccaccggcgaccttctgg
tgttgatgcgccacatggcactcagtcacttctatactaaagaggaaata
tttattcgagatttagttggcctagaagaaagaaacttaaggaaatttca
cgaaatgtaattatgtccctcccccaccccaaccccccccccccccagca
tgcacgaaatcatgttttagagacgttgtcttttaaacgtagtggactcg
ttttacacagacccacctgcacccaaattggctgatgtttaaaattacgg
gttcatgcccccctttagggattcatagttaatgggcatgaccttaaagg
taaatgaatctctcaagtgtcagggctgctagctaagggcatggccactt
tcctgtggtgtcaacagggcacctctggcttatcccatagtctttaagaa
catgatcttaggtctgttgaatcaggtgcctgtccctgtgacctcactgc
tgagagaggggaaggtaagagtggaaaatcccagagagctcagcctaaga
cctaactagcctggtgggacgcagctcaaaacaaacaaggtggactgcct
tttcacatcctccgattcaaactccatcacgcattgcatcatacacagaa
agaatagttgcagagggtaattagcctttgctcttgcaaccatgaggacc
taagttagaaatcctccccccagcccccctccccattaaaaaccccctgc
ggcttgagcctgctggtaactg
gaattcacattaatggtccctttgccaaagaattgctgtgaacacattaa
gttacaataactaacataaacagctaacaattgattgcagaagctttctc
tactttctgcaaagctatttgtctctcactagttgatttgcatccccttg
ataacatgcaacaaaggcttaagtcctcctgtggtgagcttaaggtgagg
tcttagttaattaatgtctcctagaagcttttgaaaataatttgaagtaa
gcaaatcatcttttcattcctgaattttctgcaacacaatttttctagga
tatagttaattaatgtctcctagaagcttttgaaaataatttgaagtaag
caaatcatcttttcattcctgaattttctgcaacacaatttttctaggat
ataactgaggtccaaatattgaaaaagatattgcctctgaatcttttctg
gagcaacaactattccaaaatttttaaagttcattgtgtaagagcaaagg
tttgtagtaagttttccttgaaaggattgctaataatatactctccatat
aatatacaatatacagtgaaagattcaaagtcctagctttttgtattgaa
gcagagacaattttttttaacataatgtaaggctattagccattcctaga
agcaaaactttccaatgattacaggctcactagaaacaaaccctttacaa
ttgtcaggatgcaaagacaaaaacaaccttccaaatcacatattcaatga
tgtaaaacaatgagatagatacaaatattaatgtacagtgactgaaaatg
aaagaaaactatgatgtaaggattctaaaatgaacagtaccaaatttact
caatccacatgcaggcattaaatattacacattcaggacatagtgaaaag
cttagttttcaagcttgtatgtatggcagggtgtctgaatgtatcataac
attcatagtgcacatctcattatcatgaatttctacaaataacaatgaaa
aatacatctagtgaaatattgatgtaatcatttctgactactatccacca
tatctatcccagcccaacgtccttctctcctctctgagtaagggtcttca
gagtccagcctgttttattgtaagaaatctcaagcataatcatgtcggtg
tttcaccctcatatgcttataatttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_177811230_177812092
seq2: B6Ng01-198A24.b_45_916

seq1  GAATTCCCTTTGTATATGCTCTCTCCTGTGCAGGTTTGAGGAGCCACGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTTTGTATATGCTCTCTCCTGTGCAGGTTTGAGGAGCCACGGC  50

seq1  GCCTGGAATGGACTTGTGTGCTATGCCTGTTCGTTCGGGAGACGGGACTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGAATGGACTTGTGTGCTATGCCTGTTCGTTCGGGAGACGGGACTA  100

seq1  AGGTGAAGCCGCTGCTGCTGTTACCTCGGGTACCACCGGCGACCTTCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAAGCCGCTGCTGCTGTTACCTCGGGTACCACCGGCGACCTTCTGG  150

seq1  TGTTGATGCGCCACATGGCACTCAGTCACTTCTATACTAAAGAGGAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGATGCGCCACATGGCACTCAGTCACTTCTATACTAAAGAGGAAATA  200

seq1  TTTATTCGAGATTTAGTTGGCCTAGAAGAAAGAAACTTAAGGAAATTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCGAGATTTAGTTGGCCTAGAAGAAAGAAACTTAAGGAAATTTCA  250

seq1  CGAAATGTAATTATGTCCCTCCCCCACCCCAACCCCCCCCCCCCCCAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAATGTAATTATGTCCCTCCCCCACCCCAACCCCCCCCCCCCCCAGCA  300

seq1  TGCACGAAATCATGTTTTAGAGACGTTGTCTTTTAAACGTAGTGGACTCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACGAAATCATGTTTTAGAGACGTTGTCTTTTAAACGTAGTGGACTCG  350

seq1  TTTTACACAGACCCACCTGCACCCAAATTGGCTGATGTTTAAAATTACGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACACAGACCCACCTGCACCCAAATTGGCTGATGTTTAAAATTACGG  400

seq1  GTTCATGCCCCCCTTTAGGGATTCATAGTTAATGGGCATGACCTTAAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATGCCCCCCTTTAGGGATTCATAGTTAATGGGCATGACCTTAAAGG  450

seq1  TAAATGAATCTCTCAAGTGTCAGGGCTGCTAGCTAAGGGCATGGCCACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGAATCTCTCAAGTGTCAGGGCTGCTAGCTAAGGGCATGGCCACTT  500

seq1  TCCTGTGGTGTCAACAGGGCACCTCTGGCTTATCCCATAGTCTTTAAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTGGTGTCAACAGGGCACCTCTGGCTTATCCCATAGTCTTTAAGAA  550

seq1  CATGATCTTAGGTCTGTTGAATCAGGTGCCTGTCCCTGTGACCTCACTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATCTTAGGTCTGTTGAATCAGGTGCCTGTCCCTGTGACCTCACTGC  600

seq1  TGAGAGAGGGGAAGGTAAGAGTGGAAAATCCCAGAGAGCTCAGCCTAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGAGGGGAAGGTAAGAGTGGAAAATCCCAGAGAGCTCAGCCTAAGA  650

seq1  CCTAACTAGCCTGGT-GGACGCAGCTC-AAACAAACAAGGTGGACTGCC-  697
      ||||||||||||||| ||||||||||| ||||||||||||||||||||| 
seq2  CCTAACTAGCCTGGTGGGACGCAGCTCAAAACAAACAAGGTGGACTGCCT  700

seq1  TTTCACATCCTCCGATTCAAACTCCATCACGCA-TGCATCATACACAGAA  746
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTTCACATCCTCCGATTCAAACTCCATCACGCATTGCATCATACACAGAA  750

seq1  AGAATAGTTGCAGAGGGTAA-TAGCCTTTGCTCTTGCAACCATGAGGACC  795
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGAATAGTTGCAGAGGGTAATTAGCCTTTGCTCTTGCAACCATGAGGACC  800

seq1  TAAGTTAG-AATCCTCCCCCCAG-CCCCCTCCCCATT-AAAACCCCCTG-  841
      |||||||| |||||||||||||| ||||||||||||| ||||||||||| 
seq2  TAAGTTAGAAATCCTCCCCCCAGCCCCCCTCCCCATTAAAAACCCCCTGC  850

seq1  TGCCTGAGCCTGCTGGTAACTG  863
       || ||||||||||||||||||
seq2  GGCTTGAGCCTGCTGGTAACTG  872

seq1: chr1_177955784_177956321
seq2: B6Ng01-198A24.g_708_1239 (reverse)

seq1  CAAA-TGTAAGC--ATGAGGGTGAAACACCGACATGATTATGGCTATGAG  47
      |||| | |||||  ||||||||||||||||||||||||||| ||| ||||
seq2  CAAATTATAAGCATATGAGGGTGAAACACCGACATGATTAT-GCT-TGAG  48

seq1  ATTTTTCTTAC-ATAAAACA-GCTGGACTCTGAAGACCCTACCTCAGGAG  95
      |  |||||||| |||||||| |||||||||||||||||||  |||| |||
seq2  A--TTTCTTACAATAAAACAGGCTGGACTCTGAAGACCCTTACTCA-GAG  95

seq1  AGGGAGAGAGGGGCGTGGGGCTGGGGATAGATATGGTGGATAGTAGTTCA  145
      | ||||||| || ||| ||||| ||||||||||||||||||||||| |||
seq2  A-GGAGAGAAGGACGTTGGGCT-GGGATAGATATGGTGGATAGTAG-TCA  142

seq1  GAAATGATTACATCAATATTTCACTTAGATGTTATTTTCATTGTTATTTG  195
      |||||||||||||||||||||||| |||||||  ||||||||||||||||
seq2  GAAATGATTACATCAATATTTCAC-TAGATGTATTTTTCATTGTTATTTG  191

seq1  TAGAAATTCATTGATAATTGAGATGTGCACTATGAATGTTATGATACATT  245
      |||||||||| |||||| ||||||||||||||||||||||||||||||||
seq2  TAGAAATTCA-TGATAA-TGAGATGTGCACTATGAATGTTATGATACATT  239

seq1  CAGACACCCTGCCATACATACAAGCTTGAAAACTAAGCTTTTCACTATGT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACCCTGCCATACATACAAGCTTGAAAACTAAGCTTTTCACTATGT  289

seq1  CCTGAATGTGTAATATTTAATGCCTGCATGTGGATTGAGTAAATTTGGTA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAATGTGTAATATTTAATGCCTGCATGTGGATTGAGTAAATTTGGTA  339

seq1  CTGTTCATTTTAGAATCCTTACATCATAGTTTTCTTTCATTTTCAGTCAC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCATTTTAGAATCCTTACATCATAGTTTTCTTTCATTTTCAGTCAC  389

seq1  TGTACATTAATATTTGTATCTATCTCATTGTTTTACATCATTGAATATGT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACATTAATATTTGTATCTATCTCATTGTTTTACATCATTGAATATGT  439

seq1  GATTTGGAAGGTTGTTTTTGTCTTTGCATCCTGACAATTGTAAAGGGTTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGGAAGGTTGTTTTTGTCTTTGCATCCTGACAATTGTAAAGGGTTT  489

seq1  GTTTCTAGTGAGCCTGTAATCATTGGAAAGTTTTGCTTCTAGG  538
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTAGTGAGCCTGTAATCATTGGAAAGTTTTGCTTCTAGG  532