BAC Information

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BAC

Clone NameB6Ng01-198G20
Chromosome1 (Build37)
Map Location 180,234,453 - 180,427,809
singlet/doubletdoublet
Overlap geneB230369F24Rik, LOC669454, 2310005N03Rik, Hnrpu, Efcab2
Upstream geneZfp238, EG631449, LOC100040770, 1700016C15Rik, Adss, EG631584, EG545391, LOC666262, 5830417C01Rik, LOC666284, 4930527J03Rik, LOC666295
Downstream geneD230039L06Rik, Kif26b, Smyd3, LOC666354
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-198G20.bB6Ng01-198G20.g
ACCGA020028GA020029
length1,118928
definitionB6Ng01-198G20.b B6Ng01-198G20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(180,234,453 - 180,235,552)(180,426,887 - 180,427,809)
sequence
gaattcaggcccagagttgtaaagctggtccaaaacccatggcttggggc
tggagaaatggctcaacagtaatgtgatacacttgtggagacctcatttc
agtttgcagcagcacatcaggtgtcttgcctacccataactctagctcca
gggcatcttctcccatcttctggtctctttggaccttgtacacatatata
cagaatcagtccaacacacgtgtattcacataattaagatacatcctttt
tttaagtccatggctagaaagaaactacgactactgttttactacatgac
atgatgtcaaatgcttctgaaatatttatacttataccaatagactggcg
ctatccttggctttggccagtgaaattctctctgcagtggtcagtagtta
atgcaagactcataactgaccgaaaggctaagaaaaaaagtcttttgagt
gtttatccctaaatgggacttctatatcaagatgcacccacccccactcc
acccctgggattagaaacatcgcagaagaggaggaaggaagaaggtaaga
gttggggagtagacagcactgctgtgaacagacctactgcacttatgagc
ttattgtaaccaagaccaaggtgacaagatcagccaatattccaacaggc
agcatgattggacctagtggattattattattattttgttgttgttgttg
tttgagacagagtttttctgtatagctctggctgtcctggaactcactct
gtagaccaggctggcctcaaactcagaaattttgcctgcctctgcctccc
aagtgctgggattaaaaggcgtgtgccaccacgaccagctggactattat
tttttaaaaaagtaaaaaataaaggccgggcagcgggtgtcgcaaagcct
tttaatctcagcaagaggcagaggcaggtaaggtttctttggagttcaag
gctagttctggtgtacagaacttgagttctaagaacagccagggcctacc
cagagaagaagcctttcctcgaaaaaccaaaaatcatgtaattaatttaa
aattacgaagagataggaagtggcagtgaaagactcctagagtgagctct
tgctcagaacctctagga
gaattctggggactcttcagaggtacccaagaaacaaggagagctgttgt
ttgttaattggtggctgttggtcttactttgttaagtggttgtgcgcaaa
gaaggaaaaaaacaagaagaagttagatatcctgacattgaagatcaaac
ttgccccaaagaacacccctaataaacaggaagtagtctaatgataatgc
caccccattgtgcctctatccttctttctctcctacctagtgttaggcca
ttgaaagggtagaataagggtagagaagggtgggagagagaaagaaccca
taaagtcaaaagaacagccacaaaaggggagatcagtacaagggaaagtg
gttttaaaagatagggtcggaccctctaagactatagtctatgagttgtg
catgcatggataaaggcaaacatatagtatatcgagggttgtctgacaga
aggtcagagagagccagtaggagataaagcactggaggacagttgcctgg
gaattgtgggaggggtctaggagagagatcatgggtcaatgatctggtgg
tgggcagaccacactgaggacctgggtcaggagggaagcctaaagtgatt
catacaggacactttgaggagagagccagcagagggcagtgcagagtcaa
caggtgcccaatttgcagacaagagtccccttgtgcatcctcagctgtga
ctggaaggtctggggggctcagggcttgcaaaaggagaagaatgaaagag
accaaaacgttaccacatcaccttctccagcatggaggctgtggtcatca
actgttctgagttggggttttttttggttcatgggcctccacctaggtct
gtgccacccctgcaccactgcctgggtgggtgcatgcacgactagaagcc
gtagatggctgtgcaatgtagagagata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_180234453_180235552
seq2: B6Ng01-198G20.b_43_1160

seq1  GAATTCAGGCCCAGAGTTGTAAAGCTGGTCCAAAACCCATGGCTTGGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGCCCAGAGTTGTAAAGCTGGTCCAAAACCCATGGCTTGGGGC  50

seq1  TGGAGAAATGGCTCAACAGTAATGTGATACACTTGTGGAGACCTCATTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAAATGGCTCAACAGTAATGTGATACACTTGTGGAGACCTCATTTC  100

seq1  AGTTTGCAGCAGCACATCAGGTGTCTTGCCTACCCATAACTCTAGCTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGCAGCAGCACATCAGGTGTCTTGCCTACCCATAACTCTAGCTCCA  150

seq1  GGGCATCTTCTCCCATCTTCTGGTCTCTTTGGACCTTGTACACATATATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATCTTCTCCCATCTTCTGGTCTCTTTGGACCTTGTACACATATATA  200

seq1  CAGAATCAGTCCAACACACGTGTATTCACATAATTAAGATACATCCTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATCAGTCCAACACACGTGTATTCACATAATTAAGATACATCCTTTT  250

seq1  TTTAAGTCCATGGCTAGAAAGAAACTACGACTACTGTTTTACTACATGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGTCCATGGCTAGAAAGAAACTACGACTACTGTTTTACTACATGAC  300

seq1  ATGATGTCAAATGCTTCTGAAATATTTATACTTATACCAATAGACTGGCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGTCAAATGCTTCTGAAATATTTATACTTATACCAATAGACTGGCG  350

seq1  CTATCCTTGGCTTTGGCCAGTGAAATTCTCTCTGCAGTGGTCAGTAGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCTTGGCTTTGGCCAGTGAAATTCTCTCTGCAGTGGTCAGTAGTTA  400

seq1  ATGCAAGACTCATAACTGACCGAAAGGCTAAGAAAAAAAGTCTTTTGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAGACTCATAACTGACCGAAAGGCTAAGAAAAAAAGTCTTTTGAGT  450

seq1  GTTTATCCCTAAATGGGACTTCTATATCAAGATGCACCCACCCCCACTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATCCCTAAATGGGACTTCTATATCAAGATGCACCCACCCCCACTCC  500

seq1  ACCCCTGGGATTAGAAACATCGCAGAAGAGGAGGAAGGAAGAAGGTAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTGGGATTAGAAACATCGCAGAAGAGGAGGAAGGAAGAAGGTAAGA  550

seq1  GTTGGGGAGTAGACAGCACTGCTGTGAACAGACCTACTGCACTTATGAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGGAGTAGACAGCACTGCTGTGAACAGACCTACTGCACTTATGAGC  600

seq1  TTATTGTAACCAAGACCAAGGTGACAAGATCAGCCAATATTCCAACAGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGTAACCAAGACCAAGGTGACAAGATCAGCCAATATTCCAACAGGC  650

seq1  AGCATGATTGGACCTAGTGGATTATTATTATTATTTTGTTGTTGTTGTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGATTGGACCTAGTGGATTATTATTATTATTTTGTTGTTGTTGTTG  700

seq1  TTTGAGACAGAGTTTTTCTGTATAGCTCTGGCTGTCCTGGAACTCACTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGACAGAGTTTTTCTGTATAGCTCTGGCTGTCCTGGAACTCACTCT  750

seq1  GTAGACCAGGCTGGCCTCAAACTCAGAAA-TTTGCCTGCCTCTGCCTCCC  799
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GTAGACCAGGCTGGCCTCAAACTCAGAAATTTTGCCTGCCTCTGCCTCCC  800

seq1  AAGTGCTGGGATT-AAAGGCGTGTGCCACCACGACCAGCTGGACTATTA-  847
      ||||||||||||| ||||||||||||||||||||||||||||||||||| 
seq2  AAGTGCTGGGATTAAAAGGCGTGTGCCACCACGACCAGCTGGACTATTAT  850

seq1  TTTTTAAAAAAGTAAAAA--TAAGGCCGGGCAGC-GGTGTCGC-AAGCC-  892
      ||||||||||||||||||   ||||||||||||| |||||||| ||||| 
seq2  TTTTTAAAAAAGTAAAAAATAAAGGCCGGGCAGCGGGTGTCGCAAAGCCT  900

seq1  TTTAATCTCAGCAAGAGGCAGAGGCAGGT-AGGTTTCTT--GAGTTCAAG  939
      ||||||||||||||||||||||||||||| |||||||||  |||||||||
seq2  TTTAATCTCAGCAAGAGGCAGAGGCAGGTAAGGTTTCTTTGGAGTTCAAG  950

seq1  GCTAG-TCTGGTGTACAGA--CTGAGTTCT-AGGACAGCCAGGG-CTACA  984
      ||||| |||||||||||||   |||||||| || |||||||||| |||| 
seq2  GCTAGTTCTGGTGTACAGAACTTGAGTTCTAAGAACAGCCAGGGCCTACC  1000

seq1  CAGAGAAGAAGCCTTTTCTCAGAAAACCAAAAATCATGTAATTAA-TTAA  1033
      |||||||||||||||| |||  ||||||||||||||||||||||| ||||
seq2  CAGAGAAGAAGCCTTTCCTCGAAAAACCAAAAATCATGTAATTAATTTAA  1050

seq1  AATTAAGGAGAGGATAGGAAGTGGGAGTGAAAGACTCCAAGAG-GAGCCC  1082
      ||||| | ||| |||||||||||| ||||||||||||| |||| ||| | 
seq2  AATTACGAAGA-GATAGGAAGTGGCAGTGAAAGACTCCTAGAGTGAG-CT  1098

seq1  CTTGCTCAG-ACCTC-AGGA  1100
      ||||||||| ||||| ||||
seq2  CTTGCTCAGAACCTCTAGGA  1118

seq1: chr1_180426887_180427809
seq2: B6Ng01-198G20.g_66_993 (reverse)

seq1  TATCTCTCTACATGGC-CAG-CATCTACGGCTTCTAGTCGTGCATGCACC  48
      ||||||||||||| || ||| |||||||||||||||||||||||||||||
seq2  TATCTCTCTACATTGCACAGCCATCTACGGCTTCTAGTCGTGCATGCACC  50

seq1  CA-CCAGGCAGTGGTGCAGGGGTGGCACAGACCTAGGTGGA-GACCATGA  96
      || |||||||||||||||||||||||||||||||||||||| | ||||||
seq2  CACCCAGGCAGTGGTGCAGGGGTGGCACAGACCTAGGTGGAGGCCCATGA  100

seq1  ACC-AAAAAAACCCCAACTCAGAACAGTTGATGACCACAGCCTCCATGCT  145
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAAAAAACCCCAACTCAGAACAGTTGATGACCACAGCCTCCATGCT  150

seq1  GGAGAAGGTGATGTGGTAACGTTTTGGTCTCTTTCATTCTTCTCCTTTTG  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAGGTGATGTGGTAACGTTTTGGTCTCTTTCATTCTTCTCCTTTTG  200

seq1  CAAGCCCTGAGCCCCCCAGACCTTCCAGTCACAGCTGAGGATGCACAAGG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCCTGAGCCCCCCAGACCTTCCAGTCACAGCTGAGGATGCACAAGG  250

seq1  GGACTCTTGTCTGCAAATTGGGCACCTGTTGACTCTGCACTGCCCTCTGC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCTTGTCTGCAAATTGGGCACCTGTTGACTCTGCACTGCCCTCTGC  300

seq1  TGGCTCTCTCCTCAAAGTGTCCTGTATGAATCACTTTAGGCTTCCCTCCT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTCTCCTCAAAGTGTCCTGTATGAATCACTTTAGGCTTCCCTCCT  350

seq1  GACCCAGGTCCTCAGTGTGGTCTGCCCACCACCAGATCATTGACCCATGA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCAGGTCCTCAGTGTGGTCTGCCCACCACCAGATCATTGACCCATGA  400

seq1  TCTCTCTCCTAGACCCCTCCCACAATTCCCAGGCAACTGTCCTCCAGTGC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCCTAGACCCCTCCCACAATTCCCAGGCAACTGTCCTCCAGTGC  450

seq1  TTTATCTCCTACTGGCTCTCTCTGACCTTCTGTCAGACAACCCTCGATAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTCCTACTGGCTCTCTCTGACCTTCTGTCAGACAACCCTCGATAT  500

seq1  ACTATATGTTTGCCTTTATCCATGCATGCACAACTCATAGACTATAGTCT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATATGTTTGCCTTTATCCATGCATGCACAACTCATAGACTATAGTCT  550

seq1  TAGAGGGTCCGACCCTATCTTTTAAAACCACTTTCCCTTGTACTGATCTC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGGTCCGACCCTATCTTTTAAAACCACTTTCCCTTGTACTGATCTC  600

seq1  CCCTTTTGTGGCTGTTCTTTTGACTTTATGGGTTCTTTCTCTCTCCCACC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTTGTGGCTGTTCTTTTGACTTTATGGGTTCTTTCTCTCTCCCACC  650

seq1  CTTCTCTACCCTTATTCTACCCTTTCAATGGCCTAACACTAGGTAGGAGA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTACCCTTATTCTACCCTTTCAATGGCCTAACACTAGGTAGGAGA  700

seq1  GAAAGAAGGATAGAGGCACAATGGGGTGGCATTATCATTAGACTACTTCC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAGGATAGAGGCACAATGGGGTGGCATTATCATTAGACTACTTCC  750

seq1  TGTTTATTAGGGGTGTTCTTTGGGGCAAGTTTGATCTTCAATGTCAGGAT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATTAGGGGTGTTCTTTGGGGCAAGTTTGATCTTCAATGTCAGGAT  800

seq1  ATCTAACTTCTTCTTGTTTTTTTCCTTCTTTGCGCACAACCACTTAACAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAACTTCTTCTTGTTTTTTTCCTTCTTTGCGCACAACCACTTAACAA  850

seq1  AGTAAGACCAACAGCCACCAATTAACAAACAACAGCTCTCCTTGTTTCTT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGACCAACAGCCACCAATTAACAAACAACAGCTCTCCTTGTTTCTT  900

seq1  GGGTACCTCTGAAGAGTCCCCAGAATTC  923
      ||||||||||||||||||||||||||||
seq2  GGGTACCTCTGAAGAGTCCCCAGAATTC  928