BAC Information

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BAC

Clone NameB6Ng01-198I21
Chromosome1 (Build37)
Map Location 188,961,505 - 189,119,692
singlet/doubletdoublet
Overlap geneSpata17, Gpatch2
Upstream geneTgfb2, Rrp15, LOC666832, LOC100042375, D1Pas1
Downstream geneEsrrg, 9330162B11Rik, Ush2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-198I21.bB6Ng01-198I21.g
ACCGA020120GA020121
length2621,120
definitionB6Ng01-198I21.b B6Ng01-198I21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(189,119,431 - 189,119,692)(188,961,505 - 188,962,631)
sequence
catcccctaactgggttgcctagccctatacagaattgatgtgccaggat
gaagaggcaaatggtgggtaaggaatgtccaccttctcagaggagagagg
gagaggggtatgaggtgaaggactgagtgagggaggaacagggggagcaa
ctgggatgtaaagtaaataaataagtaagtgaacagattaaaaaaaaatg
ctagtttgatctgagaggggagggaaatggccacaaggccaaatgtgtgc
catgccctcttc

gaattcaataacaggcctttgcgtacagccaccagtaggtggagcagaca
gcataatttattactgagaacaagggcaaaggaatgaaagtcgggttctt
tggaataaaacaaatctgtaaatgagattttcttcaaaggaaatatgccc
tgtatgtgttagatttggtttgactggttactgaatcaaaataaataact
ttattaaataatcaatcttcgcagaaagataaatttacaaatggaggcat
tgcttgcattttactttattcaaatcaactaaaattagctttcctttcaa
aaaaattttacagggacaaggaattttttgatgtgttcatttagtaagga
cgttgaacacaatcctgcttttcaggtggcggggcataacaaatagtatt
ttctaggaaatataattgactaatcctgttatgtctgcagcaacaaatta
accttattactactagtaaatggtgattgattatttatgcaaataagttg
ccatgttcggctttctgattgaaataaacatataaaagaggcactttact
atgacttgaactttttaattaataaagccctgaggggtgtgttaattcac
ccattgcaatattagttatttactcatgtaactcctattagcacaaacat
atttgcttgaataaagatgagataacaataaaactatgaatagctcctga
aactatttttaaaaaatacatcagagtcatactgaaataggcttaaaaat
aagcttaaattatgcctgtaagtatcaatacatcagcataaccagtctag
ggttattaattcattaaatagcattaatgaattaattattaaatgtagaa
attaataaacacaattttgctctgccaaattcagcagtgttttcaaagca
ttgtttgcctaatgttttctatctactaacaatattaggcaacattaaaa
ctataggaatataatgtcaacacattactattgtacagtgcaaattaata
atgccattactaaattgttgaactcccaataaactatgtgtcttctaaag
atgctacagatgacattcttttacaagtccacaaaactgtttgtgtacca
taacttctcacaataaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_189119431_189119692
seq2: B6Ng01-198I21.b_51_312 (reverse)

seq1  GAAGAGTGCATTGCACACATTTGGCCTTGTGGCCTTTTCCCTCCCCTCTC  50
      |||||| |||| |||||||||||||||||||||| |||||||||||||||
seq2  GAAGAGGGCATGGCACACATTTGGCCTTGTGGCCATTTCCCTCCCCTCTC  50

seq1  AGATCAAACTTGCATTTTTTTTTAATCTGTTCACTTACTTATTTATTTAC  100
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGATCAAACTAGCATTTTTTTTTAATCTGTTCACTTACTTATTTATTTAC  100

seq1  TTTACATCCCAGTTGCTCCCCCTGTTCCTCCCTCACTCAGTCCTTCACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATCCCAGTTGCTCCCCCTGTTCCTCCCTCACTCAGTCCTTCACCT  150

seq1  CATACCCCTCTCCCTCTCTCCTCTGAGAAGGTGGACATTCCTTACCCACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCCCTCTCCCTCTCTCCTCTGAGAAGGTGGACATTCCTTACCCACC  200

seq1  ATTTGCCTCTTCATCCTGGCACATCAATTCTGTATAGGGCTAGGCAACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCCTCTTCATCCTGGCACATCAATTCTGTATAGGGCTAGGCAACCC  250

seq1  AGTTAGGGGATG  262
      ||||||||||||
seq2  AGTTAGGGGATG  262


seq1: chr1_188961505_188962631
seq2: B6Ng01-198I21.g_69_1188

seq1  GAATTCAATAACAGGCCTTTGCGTACAGCCACCAGTAGGTGGAGCAGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAACAGGCCTTTGCGTACAGCCACCAGTAGGTGGAGCAGACA  50

seq1  GCATAATTTATTACTGAGAACAAGGGCAAAGGAATGAAAGTCGGGTTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAATTTATTACTGAGAACAAGGGCAAAGGAATGAAAGTCGGGTTCTT  100

seq1  TGGAATAAAACAAATCTGTAAATGAGATTTTCTTCAAAGGAAATATGCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATAAAACAAATCTGTAAATGAGATTTTCTTCAAAGGAAATATGCCC  150

seq1  TGTATGTGTTAGATTTGGTTTGACTGGTTACTGAATCAAAATAAATAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTGTTAGATTTGGTTTGACTGGTTACTGAATCAAAATAAATAACT  200

seq1  TTATTAAATAATCAATCTTCGCAGAAAGATAAATTTACAAATGGAGGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAAATAATCAATCTTCGCAGAAAGATAAATTTACAAATGGAGGCAT  250

seq1  TGCTTGCATTTTACTTTATTCAAATCAACTAAAATTAGCTTTCCTTTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGCATTTTACTTTATTCAAATCAACTAAAATTAGCTTTCCTTTCAA  300

seq1  AAAAATTTTACAGGGACAAGGAATTTTTTGATGTGTTCATTTAGTAAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTTTACAGGGACAAGGAATTTTTTGATGTGTTCATTTAGTAAGGA  350

seq1  CGTTGAACACAATCCTGCTTTTCAGGTGGCGGGGCATAACAAATAGTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTGAACACAATCCTGCTTTTCAGGTGGCGGGGCATAACAAATAGTATT  400

seq1  TTCTAGGAAATATAATTGACTAATCCTGTTATGTCTGCAGCAACAAATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGGAAATATAATTGACTAATCCTGTTATGTCTGCAGCAACAAATTA  450

seq1  ACCTTATTACTACTAGTAAATGGTGATTGATTATTTATGCAAATAAGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTATTACTACTAGTAAATGGTGATTGATTATTTATGCAAATAAGTTG  500

seq1  CCATGTTCGGCTTTCTGATTGAAATAAACATATAAAAGAGGCACTTTACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTTCGGCTTTCTGATTGAAATAAACATATAAAAGAGGCACTTTACT  550

seq1  ATGACTTGAACTTTTTAATTAATAAAGCCCTGAGGGGTGTGTTAATTCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTTGAACTTTTTAATTAATAAAGCCCTGAGGGGTGTGTTAATTCAC  600

seq1  CCATTGCAATATTAGTTATTTACTCATGTAACTCCTATTAGCACAAACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGCAATATTAGTTATTTACTCATGTAACTCCTATTAGCACAAACAT  650

seq1  ATTTGCTTGAATAAAGATGAGATAACAATAAAACTATGAATAGCTCCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCTTGAATAAAGATGAGATAACAATAAAACTATGAATAGCTCCTGA  700

seq1  AACTATTTTTAAAAAATACATCAGAGTCATACTGAAATAGGCTTAAAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATTTTTAAAAAATACATCAGAGTCATACTGAAATAGGCTTAAAAAT  750

seq1  AAGCTTAAATTATGCCTGTAAGTATCAATACATCAGCATAACCAGTCTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTAAATTATGCCTGTAAGTATCAATACATCAGCATAACCAGTCTAG  800

seq1  GGTTATTAATTCATTAAATAGCATTAATGAATTAATTATTAAATGTAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATTAATTCATTAAATAGCATTAATGAATTAATTATTAAATGTAGAA  850

seq1  ATTAATAAACACAATTTTGCTCTGCCAAATTCAGCAGTGTTTTCAAAGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATAAACACAATTTTGCTCTGCCAAATTCAGCAGTGTTTTCAAAGCA  900

seq1  TTGTTTGCCTAATGTTTTCTATCTACTAACAATATTAGGCAACATTAAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGCCTAATGTTTTCTATCTACTAACAATATTAGGCAACATTAAAA  950

seq1  CTATAGGAATATAATGTCAACACATTACTATTGTACAGTGCAAATTAATA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGGAATATAATGTCAACACATTACTATTGTACAGTGCAAATTAATA  1000

seq1  ATGCCATTACTAAATTGTTGAAACTCCCAATAAACTATGTTGTCTTCTAA  1050
      |||||||||||||||||||| |||||||||||||||||| ||||||||||
seq2  ATGCCATTACTAAATTGTTG-AACTCCCAATAAACTATG-TGTCTTCTAA  1048

seq1  AGATGCTACAGATGACATTCTTTTTACAAAGTTCAACAAAACTGTTTGTG  1100
      |||||||||||||||||||| ||||||||   || |||||||||||||||
seq2  AGATGCTACAGATGACATTC-TTTTACAA--GTCCACAAAACTGTTTGTG  1095

seq1  TACAAATAAACTTCTCACAAAAAAAAA  1127
      ||| |   |||||||||||| ||||||
seq2  TACCA--TAACTTCTCACAATAAAAAA  1120


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