BAC Information

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BAC

Clone NameB6Ng01-198O21
Chromosome1 (Build37)
Map Location 56,489,376 - 56,619,379
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC626009, 9130227L01Rik
Downstream geneHsfy2, Satb2, EG329160, 9130024F11Rik, LOC100042869, LOC383509, 1700066M21Rik, 1110034B05Rik, 9430016H08Rik, LOC667339
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-198O21.bB6Ng01-198O21.g
ACCGA020396GA020397
length1,1351,070
definitionB6Ng01-198O21.b B6Ng01-198O21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,618,247 - 56,619,379)(56,489,376 - 56,490,421)
sequence
gaattctttaatctgggaaatgtcctagtgaccattgtatgtatattctt
tgtgttatagctagactgaataccgtgctggtaaatatgaaagaaggcag
ccgctaaaggtcagcctccaggagcagtctacatggaagatacaaaagag
agcttgagacaaggtacggctctctatggaaactgaatgggtagaaatta
aaaacaaaacaaaataaaacaaaacaaaaaacaaaactctcatgatgcat
tgctccgctttcacactcaatccacagagaaagcttatagtgactctagt
cacaaggagctgttctgttactgaaagaacctggcagaatgtaaaaggac
acagaagccctgaaattggcaagatagacgtcagtgttagcagaactagc
ttcactgatttagaaaaatagaggtgcacaatgctctggccactccttga
acctgtgtgtctgccaatgttctgaccaggtgtgtgcccattgctgcacc
ttcattagactctttccttgtacccctcccatacccatttcttgagaata
gacattgtttagatctggaaatcccctaatctcccccttctcctttcccc
cctgagggcctataaaaactgggaactctttcccttcgaggacgactcct
ctacccctgcgtgggatatgagtcgtccccagagctctggctttccctga
ataaagcctcatgtggtttgcaacaagctcggtctgtcgtgagttcttgg
gtgtccgctattgtcctgaggcctgagcgaggggctcctctcggagtctt
tcattacaataatatacgttttactagagaatggtttgggtgtttttgga
agagccattttcagggtatttaagcctgttgcctgtgagctgggatctgt
cataaaggatagacagtcccactgagaaaacacacaatcaatagaaaggg
caagggaaaggggagcaagtctcagccccgtgagggctaagatggccaat
gcgcttgagggaagcctactcactgggtgggactctaggaacctcggagt
tggaggaaaacaacagaagattcaaaagtgcttcctctgcttccaatatt
cccctaggcaagtatcctcctcactgaagaaataa

gaattcattggccttaagaaggccacaccaatgattgtctctgatgtctg
tgttctgactggatctggatgaaaacccaagacatcaggagttcaggcag
gtcagttcagcatgtctgacgatgacattcaccaaggttatatattctgt
gatatataaatctcaaaacaaaactttaatatcatcaagataaccttttt
gttttttttctctgaaatctagttcttcagaagatctccttctatcaaat
ctgatccatataattttggaaggtgtaaataccttaattaccttttccaa
aaacacaaagacaaaaccttttccccaaatcagcatagccttcagctggt
aaccaggaaaacctgtagcttgccctccgtcccacaggaacaataaaaca
accacaatacacaaaatcacacacattttagcctatttaggcctttctaa
tttgttatgtcaggatattaacccaaaatttctgttcagcccacattaga
cagaatatgagtatcctgtaagactcattagagcaatgtatctttatctt
taaagcaattaattcaaacttccactaatatctgcatataggaagcagat
agtttttaattgttgagctctctttgaacagcccagatcaataactcaaa
agaggacttcttaagtttggtatttggagttttgttaggtggtctttggc
tcttagtgggagcaccatcagctcagatgggaaaattccataaaactata
tgtatacatttatatatgggattacatgtatcatagatttcttttaggaa
aacagataattgtgtgatttttgtgggtttttcagacatcctcattgtaa
ttttacccagttcccttcttctcctatacttatctccctccctctcctta
ggagccccttcccatcttccttatcagaggacttttcaagggatgtcagc
tttccagacattccttgatggctcaaggaggagagaagcaaatattattt
taacattattggcaaacattgtcactttttgaaagcacaatataacttga
gtaaacaaacatttttctaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_56618247_56619379
seq2: B6Ng01-198O21.b_50_1184 (reverse)

seq1  TTATTTCTTCAGTGAGGAGGAATACCTG-CTAGGGG-ATATGGAAGGCAG  48
      |||||||||||||||||||| |||| || ||||||| |||| | | ||||
seq2  TTATTTCTTCAGTGAGGAGG-ATACTTGCCTAGGGGAATATTGGAAGCAG  49

seq1  AGG-AGCACTTTTGGAAATC-TCTGTTGTTTT-CTCCAACTCCGAGG-TC  94
      ||| ||||||||||  |||| ||||||||||| |||||||||||||| ||
seq2  AGGAAGCACTTTTG--AATCTTCTGTTGTTTTCCTCCAACTCCGAGGTTC  97

seq1  CTAGAGGTCCAACCCAGGTGAGTAGGCTTCCCTTCAAGCGCATTGGCCAT  144
      ||||| |||| ||||| ||||||||||||||| |||||||||||||||||
seq2  CTAGA-GTCCCACCCA-GTGAGTAGGCTTCCC-TCAAGCGCATTGGCCAT  144

seq1  CTTAGCCCTCACGGGGCTGGGACTTGCT-CCCTTTCCCTTG-CCTTTCTA  192
      ||||||||||||||||||| |||||||| |||||||||||| ||||||||
seq2  CTTAGCCCTCACGGGGCTGAGACTTGCTCCCCTTTCCCTTGCCCTTTCTA  194

seq1  TTGATTGTGTGTTTTCTCAGTGGGACTGTCTATCCTTTATGACAGATCCC  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTGTGTGTTTTCTCAGTGGGACTGTCTATCCTTTATGACAGATCCC  244

seq1  AGCTCACAGGCAACAGGCTTAAATACCCTGAAAATGGCTCTTCCAAAAAC  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCACAGGCAACAGGCTTAAATACCCTGAAAATGGCTCTTCCAAAAAC  294

seq1  ACCCAAACCATTCTCTAGTAAAACGTATATTATTGTAATGAAAGACTCCG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAACCATTCTCTAGTAAAACGTATATTATTGTAATGAAAGACTCCG  344

seq1  AGAGGAGCCCCTCGCTCAGGCCTCAGGACAATAGCGGACACCCAAGAACT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGCCCCTCGCTCAGGCCTCAGGACAATAGCGGACACCCAAGAACT  394

seq1  CACGACAGACCGAGCTTGTTGCAAACCACATGAGGCTTTATTCAGGGAAA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGACAGACCGAGCTTGTTGCAAACCACATGAGGCTTTATTCAGGGAAA  444

seq1  GCCAGAGCTCTGGGGACGACTCATATCCCACGCAGGGGTAGAGGAGTCGT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAGCTCTGGGGACGACTCATATCCCACGCAGGGGTAGAGGAGTCGT  494

seq1  CCTCGAAGGGAAAGAGTTCCCAGTTTTTATAGGCCCTCAGGGGGGAAAGG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGAAGGGAAAGAGTTCCCAGTTTTTATAGGCCCTCAGGGGGGAAAGG  544

seq1  AGAAGGGGGAGATTAGGGGATTTCCAGATCTAAACAATGTCTATTCTCAA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGGGGAGATTAGGGGATTTCCAGATCTAAACAATGTCTATTCTCAA  594

seq1  GAAATGGGTATGGGAGGGGTACAAGGAAAGAGTCTAATGAAGGTGCAGCA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGGGTATGGGAGGGGTACAAGGAAAGAGTCTAATGAAGGTGCAGCA  644

seq1  ATGGGCACACACCTGGTCAGAACATTGGCAGACACACAGGTTCAAGGAGT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCACACACCTGGTCAGAACATTGGCAGACACACAGGTTCAAGGAGT  694

seq1  GGCCAGAGCATTGTGCACCTCTATTTTTCTAAATCAGTGAAGCTAGTTCT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGAGCATTGTGCACCTCTATTTTTCTAAATCAGTGAAGCTAGTTCT  744

seq1  GCTAACACTGACGTCTATCTTGCCAATTTCAGGGCTTCTGTGTCCTTTTA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACACTGACGTCTATCTTGCCAATTTCAGGGCTTCTGTGTCCTTTTA  794

seq1  CATTCTGCCAGGTTCTTTCAGTAACAGAACAGCTCCTTGTGACTAGAGTC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTGCCAGGTTCTTTCAGTAACAGAACAGCTCCTTGTGACTAGAGTC  844

seq1  ACTATAAGCTTTCTCTGTGGATTGAGTGTGAAAGCGGAGCAATGCATCAT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATAAGCTTTCTCTGTGGATTGAGTGTGAAAGCGGAGCAATGCATCAT  894

seq1  GAGAGTTTTGTTTTTTGTTTTGTTTTATTTTGTTTTGTTTTTAATTTCTA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTTTTGTTTTTTGTTTTGTTTTATTTTGTTTTGTTTTTAATTTCTA  944

seq1  CCCATTCAGTTTCCATAGAGAGCCGTACCTTGTCTCAAGCTCTCTTTTGT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTCAGTTTCCATAGAGAGCCGTACCTTGTCTCAAGCTCTCTTTTGT  994

seq1  ATCTTCCATGTAGACTGCTCCTGGAGGCTGACCTTTAGCGGCTGCCTTCT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCCATGTAGACTGCTCCTGGAGGCTGACCTTTAGCGGCTGCCTTCT  1044

seq1  TTCATATTTACCAGCACGGTATTCAGTCTAGCTATAACACAAAGAATATA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATTTACCAGCACGGTATTCAGTCTAGCTATAACACAAAGAATATA  1094

seq1  CATACAATGGTCACTAGGACATTTCCCAGATTAAAGAATTC  1133
      |||||||||||||||||||||||||||||||||||||||||
seq2  CATACAATGGTCACTAGGACATTTCCCAGATTAAAGAATTC  1135


seq1: chr1_56489376_56490421
seq2: B6Ng01-198O21.g_86_1134

seq1  GCCACACCAATGATTGTCTCTGATGTCTGTGTTCTGACTGGATCTGGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACACCAATGATTGTCTCTGATGTCTGTGTTCTGACTGGATCTGGATG  50

seq1  AAAACCCAAGACATCAGGAGTTCAGGCAGGTCAGTTCAGCATGTCTGACG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCCAAGACATCAGGAGTTCAGGCAGGTCAGTTCAGCATGTCTGACG  100

seq1  ATGACATTCACCAAGGTTATATATTCTGTGATATATAAATCTCAAAACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACATTCACCAAGGTTATATATTCTGTGATATATAAATCTCAAAACAA  150

seq1  AACTTTAATATCATCAAGATAACCTTTTTGTTTTTTTTCTCTGAAATCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTAATATCATCAAGATAACCTTTTTGTTTTTTTTCTCTGAAATCTA  200

seq1  GTTCTTCAGAAGATCTCCTTCTATCAAATCTGATCCATATAATTTTGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTCAGAAGATCTCCTTCTATCAAATCTGATCCATATAATTTTGGAA  250

seq1  GGTGTAAATACCTTAATTACCTTTTCCAAAAACACAAAGACAAAACCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTAAATACCTTAATTACCTTTTCCAAAAACACAAAGACAAAACCTTT  300

seq1  TCCCCAAATCAGCATAGCCTTCAGCTGGTAACCAGGAAAACCTGTAGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAAATCAGCATAGCCTTCAGCTGGTAACCAGGAAAACCTGTAGCTT  350

seq1  GCCCTCCGTCCCACAGGAACAATAAAACAACCACAATACACAAAATCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCCGTCCCACAGGAACAATAAAACAACCACAATACACAAAATCACA  400

seq1  CACATTTTAGCCTATTTAGGCCTTTCTAATTTGTTATGTCAGGATATTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTTAGCCTATTTAGGCCTTTCTAATTTGTTATGTCAGGATATTAA  450

seq1  CCCAAAATTTCTGTTCAGCCCACATTAGACAGAATATGAGTATCCTGTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAATTTCTGTTCAGCCCACATTAGACAGAATATGAGTATCCTGTAA  500

seq1  GACTCATTAGAGCAATGTATCTTTATCTTTAAAGCAATTAATTCAAACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCATTAGAGCAATGTATCTTTATCTTTAAAGCAATTAATTCAAACTT  550

seq1  CCACTAATATCTGCATATAGGAAGCAGATAGTTTTTAATTGTTGAGCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTAATATCTGCATATAGGAAGCAGATAGTTTTTAATTGTTGAGCTCT  600

seq1  CTTTGAACAGCCCAGATCAATAACTCAAAAGAGGACTTCTTAAGTTTGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAACAGCCCAGATCAATAACTCAAAAGAGGACTTCTTAAGTTTGGT  650

seq1  ATTTGGAGTTTTGTTAGGTGGTCTTTGGCTCTTAGTGGGAGCACCATCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGAGTTTTGTTAGGTGGTCTTTGGCTCTTAGTGGGAGCACCATCAG  700

seq1  CTCAGATGGGAAAATTCCATAAAACTATATGTATACATTTATATATGGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGATGGGAAAATTCCATAAAACTATATGTATACATTTATATATGGGA  750

seq1  TTACATGTATCATAGATTTCTTTTAGGAAAACAGATAATTGTGTGATTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATGTATCATAGATTTCTTTTAGGAAAACAGATAATTGTGTGATTTT  800

seq1  TGTGGGTTTTTCAGACATCCTCATTGTAATTTTACCCAGTTCCCTTCTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGTTTTTCAGACATCCTCATTGTAATTTTACCCAGTTCCCTTCTTC  850

seq1  TCCTATACTTATCTCCCTCCCTCTCCTTAGGAGCCCCCTTCCCATCTTCC  900
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TCCTATACTTATCTCCCTCCCTCTCCTTAGGAG-CCCCTTCCCATCTTCC  899

seq1  TTATCAGAGGAC-TTTCAA-GGATGTCAGCTTTCCCAGACATTCC-TGAT  947
      |||||||||||| |||||| ||||||||||||| ||||||||||| ||||
seq2  TTATCAGAGGACTTTTCAAGGGATGTCAGCTTT-CCAGACATTCCTTGAT  948

seq1  GGGCTCAAAGAGGAGAGAAGCAAATATTATTTTAACA-TATTGGCAAACA  996
       ||||||| |||||||||||||||||||||||||||| ||||||||||||
seq2  -GGCTCAAGGAGGAGAGAAGCAAATATTATTTTAACATTATTGGCAAACA  997

seq1  -TGTCACTTTTTGGAAGCACAATATAAC-TGAGTAAACAAACATTTTTCT  1044
       |||||||||||| |||||||||||||| |||||||||||||||||||||
seq2  TTGTCACTTTTTGAAAGCACAATATAACTTGAGTAAACAAACATTTTTCT  1047

seq1  AA  1046
      ||
seq2  AA  1049


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