BAC Information

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BAC

Clone NameB6Ng01-199B24
Chromosome1 (Build37)
Map Location 106,404,046 - 106,519,263
singlet/doubletdoublet
Overlap geneLOC383546, LOC100041134
Upstream genenone
Downstream geneCdh20, Rnf152, LOC100041985, Pign, LOC666249
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-199B24.bB6Ng01-199B24.g
ACCGA020543GA020544
length5611,167
definitionB6Ng01-199B24.b B6Ng01-199B24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,518,697 - 106,519,263)(106,404,046 - 106,404,788)
sequence
attgtgtaaagagtgggggcaagtcataaatacttcagctttatggctag
gttggtggctacagtatttttgtaatacatttgcagaaaagcatccctaa
aatattgaatttttatgtaatataaatttaaagtttgccatgcagtaatt
tttcttgctctaaataaaatcagtattggattgcagcagccacagggtag
aatgcattaggaaacctcgataaatttgtattataaatgtactcatggat
gctctcaaggtgtctggcatatgcttgaatgaaactagtcaggctcgggc
atattacatatctcaattgtatctacccttgatggacaggtatactggca
gtgtgatactaggaagtgttaattgacccaaaagaacaatcagagtctta
attcacagctggaacttggactttactcactgctgacccacaggatggtt
ttggtggggaaaagccccaaacactcatcaggacaaggttttataggaaa
tgacaagtgaggggtgagtatttctagcctggcaagcatctaattggggt
gggggtggtgg

gaattcataatagccagaaactggacacaacctagatctctgccaagtga
gcaatagatgaggaaactgtggcatacctattcagtggaatactattcag
ctaataaaaataaagaaatgaatgttgctctttgtttttgtaggaaatta
taaggggttattcttggtctcagaaaagtctagaatttgtattttaaaca
gtgttgagactgtaaaagactatgtaaacatcggaagttatactaaatta
attttgcattatgatatggctacaagcctatcagtgccagagagtagtaa
aattaggaggtgtggacttcttggaggagatgtgttacttagaatggact
ttgagatttcaatagcccatacaagatccagtcatctctctctctctctc
tctttctctctctctctctcgttctctctcactctcagtttcatctctgt
aatcacctttttctatctcttatctctttgttttccggcctgtggattag
gatataaagctcccagaactgttttgtcacaacaccacaatgactgtctg
ctttcttactgatgataatagactaaccctctgaaactgtaagtataata
gaccccagacagccacccagatcttaccacaaagctgacaaaaaaatagc
ttcaccattcaggccttagaagccagaataaaggcagcaatgacagtgaa
aatacaaaaaagtatcagtcaaaggttcaggatgtggctttgacaaatcc
caaaatgtactaatcttgaatgttggcttctatagttctactttttggtt
actgaagtgtggaaaccaggatacaagttttgtctttattaaagacaagg
cagtgaggcttggggttgcataattttgacaattttctgtagccactggc
tggaaaatacgttctgttgttgcttttaggagcacctgtgtatgacctct
gctagagttactgtgcatcataaacaagccccgagttaaattgcttcctt
tgaaaagaattgacttggttcatggtgtctattcttcgaatatcactacg
aaaaaaaaagcccaaaaacagaaacttaggttgaaagatggggatgcagt
gcccacatagcttcaacaatgttcacaaaattgaatatgtggaaccgagg
cccagcaaatcctcttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_106518697_106519263
seq2: B6Ng01-199B24.b_46_612 (reverse)

seq1  CCACCACCCCCACCCCAATTAGATGCTTGCCAGGCTAGAAATACTCACCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCACCCCCACCCCAATTAGATGCTTGCCAGGCTAGAAATACTCACCC  50

seq1  CTCACTTGTCATTTCCTATAAAACCTTGTCCTGATGAGTGTTTGGGGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTTGTCATTTCCTATAAAACCTTGTCCTGATGAGTGTTTGGGGCTT  100

seq1  TTCCCCACCAAAACCATCCTGTGGGTCAGCAGTGAGTAAAGTCCAAGTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCACCAAAACCATCCTGTGGGTCAGCAGTGAGTAAAGTCCAAGTTC  150

seq1  CAGCTGTGAATTAAGACTCTGATTGTTCTTTTGGGTCAATTAACACTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGTGAATTAAGACTCTGATTGTTCTTTTGGGTCAATTAACACTTCC  200

seq1  TAGTATCACACTGCCAGTATACCTGTCCATCAAGGGTAGATACAATTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATCACACTGCCAGTATACCTGTCCATCAAGGGTAGATACAATTGAG  250

seq1  ATATGTAATATGCCCGAGCCTGACTAGTTTCATTCAAGCATATGCCAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTAATATGCCCGAGCCTGACTAGTTTCATTCAAGCATATGCCAGAC  300

seq1  ACCTTGAGAGCATCCATGAGTACATTTATAATACAAATTTATCGAGGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGAGAGCATCCATGAGTACATTTATAATACAAATTTATCGAGGTTT  350

seq1  CCTAATGCATTCTACCCTGTGGCTGCTGCAATCCAATACTGATTTTATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATGCATTCTACCCTGTGGCTGCTGCAATCCAATACTGATTTTATTT  400

seq1  AGAGCAAGAAAAATTACTGCATGGCAAACTTTAAATTTATATTACATAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAAGAAAAATTACTGCATGGCAAACTTTAAATTTATATTACATAAA  450

seq1  AATTCAATATTTTAGGGATGCTTTTCTGCAAATGTATTACAAAAATACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAATATTTTAGGGATGCTTTTCTGCAAATGTATTACAAAAATACTG  500

seq1  TAGCCACCAACCTAGCCATAAAGCTGAAGTATTTATGACTTGCCCCCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCACCAACCTAGCCATAAAGCTGAAGTATTTATGACTTGCCCCCACT  550

seq1  CTTTACACAATGAATTC  567
      |||||||||||||||||
seq2  CTTTACACAATGAATTC  567


seq1: chr1_106404046_106404788
seq2: B6Ng01-199B24.g_487_1228

seq1  CTCTCACTCTCAGTTTCATCTCTGTAATCACCTTTTTCTATCTCTTATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCACTCTCAGTTTCATCTCTGTAATCACCTTTTTCTATCTCTTATCT  50

seq1  CTTTGTTTTCCGGCCTGTGGATTAGGATATAAAGCTCCCAGAACTGTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTTTCCGGCCTGTGGATTAGGATATAAAGCTCCCAGAACTGTTTT  100

seq1  GTCACAACACCACAATGACTGTCTGCTTTCTTACTGATGATAATAGACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAACACCACAATGACTGTCTGCTTTCTTACTGATGATAATAGACTA  150

seq1  ACCCTCTGAAACTGTAAGTATAATAGACCCCAGACAGCCACCCAGATCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCTGAAACTGTAAGTATAATAGACCCCAGACAGCCACCCAGATCTT  200

seq1  ACCACAAAGCTGACAAAAAAATAGCTTCACCATTCAGGCCTTAGAAGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAAAGCTGACAAAAAAATAGCTTCACCATTCAGGCCTTAGAAGCCA  250

seq1  GAATAAAGGCAGCAATGACAGTGAAAATACAAAAAAGTATCAGTCAAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAAGGCAGCAATGACAGTGAAAATACAAAAAAGTATCAGTCAAAGG  300

seq1  TTCAGGATGTGGCTTTGACAAATCCCAAAATGTACTAATCTTGAATGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGATGTGGCTTTGACAAATCCCAAAATGTACTAATCTTGAATGTTG  350

seq1  GCTTCTATAGTTCTACTTTTTGGTTACTGAAGTGTGGAAACCAGGATACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTATAGTTCTACTTTTTGGTTACTGAAGTGTGGAAACCAGGATACA  400

seq1  AGTTTTGTCTTTAATTAAAAGACAAGGCAGTGAGGCTTGGGGTTGCATAA  450
      |||||||||||||  | |||||||||||||||||||||||||||||||||
seq2  AGTTTTGTCTTTA--TTAAAGACAAGGCAGTGAGGCTTGGGGTTGCATAA  448

seq1  TTTTGACAA-TTTCTGTAGCCACTGGCTGGAAAATACGTTCTGTTG-TGC  498
      ||||||||| |||||||||||||||||||||||||||||||||||| |||
seq2  TTTTGACAATTTTCTGTAGCCACTGGCTGGAAAATACGTTCTGTTGTTGC  498

seq1  TTTTAGGAGCACCTGTGTATGACCTCTGCTAGAGTTACTGTGCATCATAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGGAGCACCTGTGTATGACCTCTGCTAGAGTTACTGTGCATCATAA  548

seq1  ACAAGCCCCGAGTTAAA-TGCTTCCTTTGAAAAGAATTGACTTGG-TCAT  596
      ||||||||||||||||| ||||||||||||||||||||||||||| ||||
seq2  ACAAGCCCCGAGTTAAATTGCTTCCTTTGAAAAGAATTGACTTGGTTCAT  598

seq1  GGTGTCTATTCTCAGAAAAAACAACAACAAAAAAAAAAACCCAAAAAAAC  646
      ||||||||||||  |  || |  || || ||||||||| |||  ||||||
seq2  GGTGTCTATTCTTCG--AATATCACTACGAAAAAAAAAGCCC--AAAAAC  644

seq1  AGAAACTAAGGTTGAAAGATGGGATGGCAGTG-CCACATAGCTTCAACAA  695
      ||||||| |||||||||||||||   |||||| ||||||||||||||| |
seq2  AGAAACTTAGGTTGAAAGATGGGGATGCAGTGCCCACATAGCTTCAAC-A  693

seq1  ATGTTTACAAAAAATGATATGTGAACCTGAGGGCCAGCAAAT-ATCTTC  743
      ||||| ||||||    ||||||| | | |||| |||||||||  |||||
seq2  ATGTTCACAAAATTGAATATGTGGAACCGAGGCCCAGCAAATCCTCTTC  742


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