BAC Information

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BAC

Clone NameB6Ng01-199F04
Chromosome1 (Build37)
Map Location 59,437,242 - 59,628,995
singlet/doubletdoublet
Overlap geneFzd7, Gm973
Upstream geneEG628262, Bzw1, Clk1, Ppil3, Nif3l1, Orc2l, BC049806, Ndufb3, EG667397, Als2cr12, Cflar, LOC100042431, Casp8, EG667419, Trak2, Als2cr2, 4930408G06Rik, EG667447, Als2cr11, Als2cr4, Mpp4, Als2, Als2cr7
Downstream geneSumo1, LOC100042476, Nol5, B430105G09Rik, LOC100043007, Bmpr2, Als2cr13, LOC100042496, Ica1l, Wdr12, Carf, Nbeal1, Cyp20a1, Abi2, Raph1, LOC100043027
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-199F04.bB6Ng01-199F04.g
ACCGA020684GA020685
length1,170968
definitionB6Ng01-199F04.b B6Ng01-199F04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,627,830 - 59,628,995)(59,437,242 - 59,438,194)
sequence
gaattccaggacagccatagctacacagagaaaccctgtctcgaaaaaca
aaaaccaaaaagacaaaaaaacaaaaccaagaaaacaacagagttgccat
tgtcatggtgccgcctccttatgacaataagacactaagacatcgccttt
caatatgtcgtctccaggaacttgttgccaacacaagtcgcccgaaactc
atatgtctctgcctcacttccaccctccaaatctcacgggatcaaggtta
actggcaaaacacaacatgcattcaactcccttgctgcaaatgttaactg
ggaaatgtagtttttggccttctagcttctacactacaggaatgttggag
gcccaacaaccatacgctgccatgttttcctttattcagacttttgatct
gggatcagtagaactgataacatctgccaacgttctttggtacgggtcat
tagcaaaccctgattgggcaagaggaacaatgaattattaccacatgggt
ctccttcttgccttcctctcctcagaggtggaggctctgtggattgtgtg
attcagaactgaggttttaagatgggaagcaagaagagtcagaccctagt
gaatgctgtgaccaagtttcaggttagagagcagagccagcccactgagg
gagccccttggggacctggctaatgtagaaagagacactgcggggaggca
ccctagaaaccataggctcagcattttccaaagaaatgtttcaaaaaatg
attttgatccatatgacacttggctaaaaacccaaaagtcattcagtgat
cacatgcttctacatcaggaattcttaacactactctatttgttcccaaa
tacctttgaccaaattggccctggaagcactcccctcttgtgggctttct
atacccttgccaggctctggtgtcccatgggactgtgctggaggactgga
tgtcaaaccagcttttccctttgctatgaagaggtgaggctcgaagagtg
aaattgtttgtccatgatgccaaagctacaggtggtaagagtggtcgtaa
aaactcagattgttggcccttagttcaaggaccctttgtcttttccttat
agttaccttactgaagaccattccgttaacatttcttaggcatcatcctt
tagaacaccgatgctagaga
gaattctgggacagccagggctatatagagaaaccctgtctcacctccct
ccccccccaaaaaaagaaaagatgggaactaggcatggtgacacacacct
gtaatcctagcactggggaaactggggcaggcagatcacagtttgaggct
aacctggactacagggttacagaaggaaggacagttttgaaaggtcctgt
cttggttggcggctcactgctgttgtcaggtacagaagaacactgaatct
ggagtcaaaagaccaaagttctagttctaactctgccttttaccagacca
tcagtccagcctgcccaatttccaacaccgtctactccatgaagtttgag
tagcaaagtgagctcagaaatcaggaagatatgagcagaaagttatttaa
aaatagcgtacatacatacatcttgggttttactgagtagctacaaaaaa
aaaatttttttaatgaaagtaatgacttaaagaccaagaatcttagcagt
gaggcaaaacaatgccaataatgaaagtcctgcttgaacctgctggggtt
gataatatggatctgtacagatcttgaaattacgagtgcataggcagtca
gtcatcttgcccagtggctgaagagacagttatgacacagctcttaccaa
attaggcctctttccacttcacccacgttttgttctttggctcccgccac
tcagtaacacccatctctcccctggctctggcctccaccctggctggtac
ccaagcctcccacggagcaggaggcaacccctgcggatcagggatgtttt
ccttcccgtctgcccctttggtccccttatgggaagacgcctcgggtgtt
gaaacggcacaccctactatgttgggctttctggtttctggaggcctcaa
gaagaaagcagcagttccctcttatttcttgtggaaccgaggaaggtccc
acttggcttggatggctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_59627830_59628995
seq2: B6Ng01-199F04.b_45_1214 (reverse)

seq1  TCTCTTAGCATCTGTTGTCATAAAGATGATGCCT-AGAAATGT--AAGGA  47
      |||| ||||||| ||  ||  || |||||||||| ||||||||  | |||
seq2  TCTC-TAGCATCGGTGTTCTAAAGGATGATGCCTAAGAAATGTTAACGGA  49

seq1  ATGTCTTTCAGTAA-GTAACTATGAGG-AAAGACAAAGGG-CCCTGAACT  94
      |||   |||||||| |||||||| ||| |||||||||||| || ||||||
seq2  ATGGTCTTCAGTAAGGTAACTATAAGGAAAAGACAAAGGGTCCTTGAACT  99

seq1  AAAGGCCCACAATCTTGAG-TTTTACGACCACCTCTTACCACCTGTGGCT  143
      || |||| |||||| |||| ||||||||||| |||||||||||||| |||
seq2  AAGGGCCAACAATC-TGAGTTTTTACGACCA-CTCTTACCACCTGTAGCT  147

seq1  TTGGCAATCATGGACAAACAATTTCACTCTTCGAGCCTCAACCTCTTCAT  193
      ||||| ||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTGGC-ATCATGGACAAACAATTTCACTCTTCGAGCCTC-ACCTCTTCAT  195

seq1  AGCAAAGGG-AAAGCTGGTTTGACATCCAGTCCTCCAGCACAGTCCCATG  242
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGGGAAAAGCTGGTTTGACATCCAGTCCTCCAGCACAGTCCCATG  245

seq1  GGACACCAGAGCCTGGCAAGGGTATAGAAAGCCCACAAGAGGGGAGTGCT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACCAGAGCCTGGCAAGGGTATAGAAAGCCCACAAGAGGGGAGTGCT  295

seq1  TCCAGGGCCAATTTGGTCAAAGGTATTTGGGAACAAATAGAGTAGTGTTA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGGCCAATTTGGTCAAAGGTATTTGGGAACAAATAGAGTAGTGTTA  345

seq1  AGAATTCCTGATGTAGAAGCATGTGATCACTGAATGACTTTTGGGTTTTT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTCCTGATGTAGAAGCATGTGATCACTGAATGACTTTTGGGTTTTT  395

seq1  AGCCAAGTGTCATATGGATCAAAATCATTTTTTGAAACA-TTCTTTGGAA  441
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGCCAAGTGTCATATGGATCAAAATCATTTTTTGAAACATTTCTTTGGAA  445

seq1  AATGCTGAGCCTATGGTTTCTAGGGTGCCTCCCCGCAGTGTCTCTTTCTA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTGAGCCTATGGTTTCTAGGGTGCCTCCCCGCAGTGTCTCTTTCTA  495

seq1  CATTAGCCAGGTCCCCAAGGGGCTCCCTCAGTGGGCTGGCTCTGCTCTCT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGCCAGGTCCCCAAGGGGCTCCCTCAGTGGGCTGGCTCTGCTCTCT  545

seq1  AACCTGAAACTTGGTCACAGCATTCACTAGGGTCTGACTCTTCTTGCTTC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGAAACTTGGTCACAGCATTCACTAGGGTCTGACTCTTCTTGCTTC  595

seq1  CCATCTTAAAACCTCAGTTCTGAATCACACAATCCACAGAGCCTCCACCT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTTAAAACCTCAGTTCTGAATCACACAATCCACAGAGCCTCCACCT  645

seq1  CTGAGGAGAGGAAGGCAAGAAGGAGACCCATGTGGTAATAATTCATTGTT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGAGAGGAAGGCAAGAAGGAGACCCATGTGGTAATAATTCATTGTT  695

seq1  CCTCTTGCCCAATCAGGGTTTGCTAATGACCCGTACCAAAGAACGTTGGC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTGCCCAATCAGGGTTTGCTAATGACCCGTACCAAAGAACGTTGGC  745

seq1  AGATGTTATCAGTTCTACTGATCCCAGATCAAAAGTCTGAATAAAGGAAA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTTATCAGTTCTACTGATCCCAGATCAAAAGTCTGAATAAAGGAAA  795

seq1  ACATGGCAGCGTATGGTTGTTGGGCCTCCAACATTCCTGTAGTGTAGAAG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGCAGCGTATGGTTGTTGGGCCTCCAACATTCCTGTAGTGTAGAAG  845

seq1  CTAGAAGGCCAAAAACTACATTTCCCAGTTAACATTTGCAGCAAGGGAGT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAGGCCAAAAACTACATTTCCCAGTTAACATTTGCAGCAAGGGAGT  895

seq1  TGAATGCATGTTGTGTTTTGCCAGTTAACCTTGATCCCGTGAGATTTGGA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGCATGTTGTGTTTTGCCAGTTAACCTTGATCCCGTGAGATTTGGA  945

seq1  GGGTGGAAGTGAGGCAGAGACATATGAGTTTCGGGCGACTTGTGTTGGCA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGAAGTGAGGCAGAGACATATGAGTTTCGGGCGACTTGTGTTGGCA  995

seq1  ACAAGTTCCTGGAGACGACATATTGAAAGGCGATGTCTTAGTGTCTTATT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTTCCTGGAGACGACATATTGAAAGGCGATGTCTTAGTGTCTTATT  1045

seq1  GTCATAAGGAGGCGGCACCATGACAATGGCAACTCTGTTGTTTTCTTGGT  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATAAGGAGGCGGCACCATGACAATGGCAACTCTGTTGTTTTCTTGGT  1095

seq1  TTTGTTTTTTTGTCTTTTTGGTTTTTGTTTTTCGAGACAGGGTTTCTCTG  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTTTGTCTTTTTGGTTTTTGTTTTTCGAGACAGGGTTTCTCTG  1145

seq1  TGTAGCTATGGCTGTCCTGGAATTC  1166
      |||||||||||||||||||||||||
seq2  TGTAGCTATGGCTGTCCTGGAATTC  1170

seq1: chr1_59437242_59438194
seq2: B6Ng01-199F04.g_69_1036

seq1  GAATTCTGGGACAGCCAGGGCTATATAGAGAAACCCTGTCTCACCTCCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGACAGCCAGGGCTATATAGAGAAACCCTGTCTCACCTCCCT  50

seq1  CCCCCCCCAAAAAAAGAAAAGATGGGAACTAGGCATGGTGACACACACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCAAAAAAAGAAAAGATGGGAACTAGGCATGGTGACACACACCT  100

seq1  GTAATCCTAGCACTGGGGAAACTGGGGCAGGCAGATCACAGTTTGAGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCCTAGCACTGGGGAAACTGGGGCAGGCAGATCACAGTTTGAGGCT  150

seq1  AACCTGGACTACAGGGTTACAGAAGGAAGGACAGTTTTGAAAGGTCCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGGACTACAGGGTTACAGAAGGAAGGACAGTTTTGAAAGGTCCTGT  200

seq1  CTTGGTTGGCGGCTCACTGCTGTTGTCAGGTACAGAAGAACACTGAATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTTGGCGGCTCACTGCTGTTGTCAGGTACAGAAGAACACTGAATCT  250

seq1  GGAGTCAAAAGACCAAAGTTCTAGTTCTAACTCTGCCTTTTACCAGACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCAAAAGACCAAAGTTCTAGTTCTAACTCTGCCTTTTACCAGACCA  300

seq1  TCAGTCCAGCCTGCCCAATTTCCAACACCGTCTACTCCATGAAGTTTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCCAGCCTGCCCAATTTCCAACACCGTCTACTCCATGAAGTTTGAG  350

seq1  TAGCAAAGTGAGCTCAGAAATCAGGAAGATATGAGCAGAAAGTTATTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAAGTGAGCTCAGAAATCAGGAAGATATGAGCAGAAAGTTATTTAA  400

seq1  AAATAGCGTACATACATACATCTTGGGTTTTACTGAGTAGCTACAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGCGTACATACATACATCTTGGGTTTTACTGAGTAGCTACAAAAAA  450

seq1  AAAATTTTTTTAATGAAAGTAATGACTTAAAGACCAAGAATCTTAGCAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTTTTTAATGAAAGTAATGACTTAAAGACCAAGAATCTTAGCAGT  500

seq1  GAGGCAAAACAATGCCAATAATGAAAGTCCTGCTTGAACCTGCTGGGGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAAAACAATGCCAATAATGAAAGTCCTGCTTGAACCTGCTGGGGTT  550

seq1  GATAATATGGATCTGTACAGATCTTGAAATTACGAGTGCATAGGCAGTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATATGGATCTGTACAGATCTTGAAATTACGAGTGCATAGGCAGTCA  600

seq1  GTCATCTTGCCCAGTGGCTGAAGAGACAGTTATGACACAGCTCTTACCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCTTGCCCAGTGGCTGAAGAGACAGTTATGACACAGCTCTTACCAA  650

seq1  ATTAGGCCTC-TTCCACTTCACCCACG-TTTGTTC-TTGGCTCCCGCCAC  697
      |||||||||| |||||||||||||||| ||||||| ||||||||||||||
seq2  ATTAGGCCTCTTTCCACTTCACCCACGTTTTGTTCTTTGGCTCCCGCCAC  700

seq1  TCAGTAACACCCATCTCTCCCCTGGCTCTGGCCTCCACCCTGGCTGGTAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAACACCCATCTCTCCCCTGGCTCTGGCCTCCACCCTGGCTGGTAC  750

seq1  CCAAGCCTCCCACGGAGCAGGAGGCAACCCCTGCGGATCAGGGGATGTTT  797
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CCAAGCCTCCCACGGAGCAGGAGGCAACCCCTGCGGATCA-GGGATGTTT  799

seq1  TCCTTCCCGTCTGCCCC-TTGGTCCCCTTAT-GGTAGACGCCTCGGGTG-  844
      ||||||||||||||||| ||||||||||||| || |||||||||||||| 
seq2  TCCTTCCCGTCTGCCCCTTTGGTCCCCTTATGGGAAGACGCCTCGGGTGT  849

seq1  TGAAACGGCACACCC-ACAATGTT-GGCCTTCTGG-TTCTGGAGGCCTCA  891
      ||||||||||||||| || ||||| ||| |||||| ||||||||||||||
seq2  TGAAACGGCACACCCTACTATGTTGGGCTTTCTGGTTTCTGGAGGCCTCA  899

seq1  AG-AGAAAGCAGCAG-TCCCTC-TACTTCCTG-GGGACCGAGGAA-GTCA  936
      || |||||||||||| |||||| || ||| || || ||||||||| ||| 
seq2  AGAAGAAAGCAGCAGTTCCCTCTTATTTCTTGTGGAACCGAGGAAGGTCC  949

seq1  CACTTG--CTGGATGGCTG  953
      ||||||   ||||||||||
seq2  CACTTGGCTTGGATGGCTG  968