BAC Information

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BAC

Clone NameB6Ng01-199G12
Chromosome1 (Build37)
Map Location 52,100,507 - 52,246,283
singlet/doubletdoublet
Overlap geneStat4, LOC100042634, Stat1, Gls
Upstream geneTmeff2, Sdpr, LOC383504, Obfc2a, Myo1b, EG667010, LOC667014
Downstream geneLOC546735, Nab1, LOC546736, Gm553, LOC100042094, EG433305, 5330401P04Rik, 2210010L05Rik, Inpp1, Hibch, 1700019D03Rik, Gdf8, 1700019A02Rik, Pms1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-199G12.bB6Ng01-199G12.g
ACCGA020748GA020749
length1,0861,136
definitionB6Ng01-199G12.b B6Ng01-199G12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,100,507 - 52,101,576)(52,245,171 - 52,246,283)
sequence
gaattctctgttagcggcacagccacccagatgtggctccttggctcctg
ctctctgccctggagtcttcacagcaaactcaaaggcaaattcaccatct
cagacctaggaggcctcactgtgttgccagcttttcccctctctagatgc
ttgctttacttactttctatttgtaacaaaagctgaatggacagaagtca
gtacaatctcagagtttaaggtagaaatgacctgatagaatgtggcccat
ccagatcacccaacagcatgcgtttatttaatattctgttttttaagact
aatgtaaaagtgttaagtgaaaactatggaatacaaacatgtatccagaa
tgcatattatatacctctagatcttaggggaaaatatttacagtgggagg
aaaaatatcaaaatgtcgaccatattctctttagtgtattacagtcatga
tttagatttccccattttacttttctttttgtcttctgttttcagtaata
ggtataaattttatttgttgtctgaaaaagaattttgtttaaaataatcc
acgtactaaacatcagcccagagggaaactgggagctgaacaaccgggcc
ttcattttaaaaggacttatgtttattctggccatggttttatctatgtt
catacctgtgtgtctctgtgagtagcgcctgtgtgtaagggcctgcatag
gacagaaaaggcatcagagcctcagattccttgaagctggagttacaggt
ggttgagagctattcagcatgggtgtgggaaccaagtcggggtcctctga
aagagcagaagttctccttttttaaaaaaatattaagttattttttacat
tccatattccattccccatccaccctccgtctgtctacatcccacacctc
ctccccacccacatcatctcggagtggatgccccccacccccccacccta
cctgaacctctaaacttccctgaaggcctccaagtctcttgagggtctag
gtagcatcatctctgaatggatccctagaaccttgggtggcccttgaata
gttatgttgtggatgggggcctcaaatcagtctgat
gaattcacttttgtcacgtaagcaaattttattagtgaggaaaaacgggg
tgggcatataagctaagctgtccctctcttaccctttttttttttttttt
ttatactttcctacctgtggactagttaaatgggtcgtattggaggtggt
cgtaaaaaagcttcaaattgtctttataacaaaaacaggttccatttatt
ctttcaaaaaattctgtttatgcttaatttatttaaaaatgtccttaatg
tgtgaatgttttgcctgcttatatatgtgtgctataactaaaatcctcgc
agaccacaagaaactgttgtattcctcacactggagttacagacagttgt
gagctgccatgtgggtactaggaatcaaattggggttctctgaaatagca
gtcagtgctcttaactgctgagtgttttactttcccagattataatttat
tttcagtcttcaaaaacttatcaataaaaattacaactaaatttctattc
ctgtcctgatgtcagtcctcttcctgtctctttggtctgttacactagtc
tgcaagtagttgctacaggtggtggtgaagctacacaggataaggcgtga
tctgttgaaatatgaataaaccagtgaatatctgatttcttacatgtatt
ctgtgtaactctttaccggatcttgtttctctgggtaacttccataacta
tgataatttgagacactttgcaaaaaaacttgatcctcggagaggaggag
gtgatcgaagggtaaaccagtccatccttaagatccatctcagtgtcctc
taagatgagcaagcagccctcctgcttacgtaaacgtcaacttgtttata
gcctcaaggcttttgccaatttccaaataagatatttttctggtccgtca
tacatactaaaatcatattgtaatatttaaacaaaattgtttagacttat
catgcttgtttttgtacagctaaaggcttgtcttttactccaaataattt
gatcagctattgttcaggattaaattttagctgcatttgtctagtctggg
gcatggagatggataataggatcagctccagtaagactgaattatgcaca
agggccactggacaattacagttttttccagcatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_52100507_52101576
seq2: B6Ng01-199G12.b_44_1129

seq1  GAATTCTCTGTTAGCGGCACAGCCACCCAGATGTGGCTCCTTGGCTCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTTAGCGGCACAGCCACCCAGATGTGGCTCCTTGGCTCCTG  50

seq1  CTCTCTGCCCTGGAGTCTTCACAGCAAACTCAAAGGCAAATTCACCATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGCCCTGGAGTCTTCACAGCAAACTCAAAGGCAAATTCACCATCT  100

seq1  CAGACCTAGGAGGCCTCACTGTGTTGCCAGCTTTTCCCCTCTCTAGATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCTAGGAGGCCTCACTGTGTTGCCAGCTTTTCCCCTCTCTAGATGC  150

seq1  TTGCTTTACTTACTTTCTATTTGTAACAAAAGCTGAATGGACAGAAGTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTACTTACTTTCTATTTGTAACAAAAGCTGAATGGACAGAAGTCA  200

seq1  GTACAATCTCAGAGTTTAAGGTAGAAATGACCTGATAGAATGTGGCCCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAATCTCAGAGTTTAAGGTAGAAATGACCTGATAGAATGTGGCCCAT  250

seq1  CCAGATCACCCAACAGCATGCGTTTATTTAATATTCTGTTTTTTAAGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATCACCCAACAGCATGCGTTTATTTAATATTCTGTTTTTTAAGACT  300

seq1  AATGTAAAAGTGTTAAGTGAAAACTATGGAATACAAACATGTATCCAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAAAAGTGTTAAGTGAAAACTATGGAATACAAACATGTATCCAGAA  350

seq1  TGCATATTATATACCTCTAGATCTTAGGGGAAAATATTTACAGTGGGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATATTATATACCTCTAGATCTTAGGGGAAAATATTTACAGTGGGAGG  400

seq1  AAAAATATCAAAATGTCGACCATATTCTCTTTAGTGTATTACAGTCATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATATCAAAATGTCGACCATATTCTCTTTAGTGTATTACAGTCATGA  450

seq1  TTTAGATTTCCCCATTTTACTTTTCTTTTTGTCTTCTGTTTTCAGTAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGATTTCCCCATTTTACTTTTCTTTTTGTCTTCTGTTTTCAGTAATA  500

seq1  GGTATAAATTTTATTTGTTGTCTGAAAAAGAATTTTGTTTAAAATAATCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATAAATTTTATTTGTTGTCTGAAAAAGAATTTTGTTTAAAATAATCC  550

seq1  ACGTACTAAACATCAGCCCAGAGGGAAACTGGGAGCTGAACAACCGGGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTACTAAACATCAGCCCAGAGGGAAACTGGGAGCTGAACAACCGGGCC  600

seq1  TTCATTTTAAAAGGACTTATGTTTATTCTGGCCATGGTTTTATCTATGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTTAAAAGGACTTATGTTTATTCTGGCCATGGTTTTATCTATGTT  650

seq1  CATACCTGTGTGTCTCTGTGAGTAGCGCCTGTGTGTAAGGGCCTGCAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CATACCTGTGTGTCTCTGTGAGTAGCGCCTGTGTGTAAGGGCCTGCATAG  700

seq1  GCCAGAAAAGGCATCAGAGCCTCAGATTCCTTGAAGCTGGAGTTACAGGT  750
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAAAAGGCATCAGAGCCTCAGATTCCTTGAAGCTGGAGTTACAGGT  750

seq1  GGTTGAGAGCTATTCAGCATGGGTGTGGGAACCAAGTCGGGGTCCTCTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGAGAGCTATTCAGCATGGGTGTGGGAACCAAGTCGGGGTCCTCTGA  800

seq1  AAGAGCAGGAAGTTCTCCTTTTTTAAAAAAATATTAATTTATTTTTTACA  850
      ||||||| ||||||||||||||||||||||||||||| ||||||||||||
seq2  AAGAGCA-GAAGTTCTCCTTTTTTAAAAAAATATTAAGTTATTTTTTACA  849

seq1  TTCCATATTCCATTCCCCATCCACCCTCCGTCTGTCTACATCCCACACCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATATTCCATTCCCCATCCACCCTCCGTCTGTCTACATCCCACACCT  899

seq1  CCTCCCCAACCCACACCATCTCCACGTGGATGCCCCC--ACCCCCCACCC  948
      ||||||| ||||||| ||||||   ||||||||||||   ||||||||||
seq2  CCTCCCC-ACCCACATCATCTCGGAGTGGATGCCCCCCACCCCCCCACCC  948

seq1  CACCTG-ACCTCTAAAC-TCCCTG-AGGCCTCC-AGTCTCTTGAGGGT-T  993
       ||||| |||||||||| |||||| |||||||| |||||||||||||| |
seq2  TACCTGAACCTCTAAACTTCCCTGAAGGCCTCCAAGTCTCTTGAGGGTCT  998

seq1  AGGT-GCATCATCTCTGAATGAA--CACAGA--CCTGGGT-GCCCTTTAT  1037
      |||| |||||||||||||||| |  |  |||  | ||||| |||||| | 
seq2  AGGTAGCATCATCTCTGAATGGATCCCTAGAACCTTGGGTGGCCCTTGAA  1048

seq1  T--GTATG-TGT-GTTGGGGGCCTCATATCAG-CTGAT  1070
      |   |||| ||| | ||||||||||| ||||| |||||
seq2  TAGTTATGTTGTGGATGGGGGCCTCAAATCAGTCTGAT  1086

seq1: chr1_52245171_52246283
seq2: B6Ng01-199G12.g_61_1196 (reverse)

seq1  ACATTCTGG-AAAAACTGTTA-TCTCCAGTGGCCTTTTT--CTTATTTAG  46
      |||| |||| ||||||||| | | |||||||||| || |   | ||| ||
seq2  ACATGCTGGAAAAAACTGTAATTGTCCAGTGGCCCTTGTGCATAATTCAG  50

seq1  TCTTA-TGAACCT-AT-CTATT-TACATATCCATG-CACAAACTAGAC-A  90
      ||||| || | || || ||||| | ||| |||||| | || ||||||| |
seq2  TCTTACTGGAGCTGATCCTATTATCCATCTCCATGCCCCAGACTAGACAA  100

seq1  ATG-AGCT-AAATTTAATCCCGAACAATAACTGA-CAAA-TATTTGGAGT  136
      ||| |||| ||||||||||| |||||||| |||| |||| ||||||||||
seq2  ATGCAGCTAAAATTTAATCCTGAACAATAGCTGATCAAATTATTTGGAGT  150

seq1  AAAA-ACAAGGCTTTAGCTTT---AAAACCAGCACTGCTAAG-CT-AACA  180
      |||| ||||| |||||||| |   ||||| |||| || |||| || ||||
seq2  AAAAGACAAGCCTTTAGCTGTACAAAAACAAGCA-TGATAAGTCTAAACA  199

seq1  ATTTTGTTTAAATATTACAA-ATGATTTTAGTATCTATGACGGACAATAA  229
      |||||||||||||||||||| ||||||||||||| |||||||||| | ||
seq2  ATTTTGTTTAAATATTACAATATGATTTTAGTATGTATGACGGACCAGAA  249

seq1  AAATAACTTATTTGG-AATTGGC-AAAGACTTGAGGCTGTTAACAAGCTG  277
      ||||| ||||||||| ||||||| |||| ||||||||| | |||||| ||
seq2  AAATATCTTATTTGGAAATTGGCAAAAGCCTTGAGGCTATAAACAAGTTG  299

seq1  ACGTTTACGTAAGCAGGAGGGCTGCTTGCTCATCTTAGAGGACACTGAGA  327
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTTACGTAAGCAGGAGGGCTGCTTGCTCATCTTAGAGGACACTGAGA  349

seq1  AGGATC-TAAGGAAGGACTGGCTTACCCTTTGATCACCTCCTTCTCTCCG  376
       ||||| |||||| ||||||| |||||||| ||||||||||| |||||||
seq2  TGGATCTTAAGGATGGACTGGTTTACCCTTCGATCACCTCCTCCTCTCCG  399

seq1  AGGATCAAGTTTTTTTGCAAAGTGTCTCAAATTATCATAGTTATGGAAGT  426
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCAAGTTTTTTTGCAAAGTGTCTCAAATTATCATAGTTATGGAAGT  449

seq1  TACACAGAGAAACAAGATCCTGTAAAGAGTTACACAGAATACATGTAAGA  476
      ||| |||||||||||||||| |||||||||||||||||||||||||||||
seq2  TACCCAGAGAAACAAGATCCGGTAAAGAGTTACACAGAATACATGTAAGA  499

seq1  AATCAGATATTCACTGGTTTATTCATATTTCAACAGATCACGCCTTATCC  526
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGATATTCACTGGTTTATTCATATTTCAACAGATCACGCCTTATCC  549

seq1  TGTGTAGCTTCACCACCACCTCTAGCAACTACTTGCAGACTAGTGTAACA  576
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TGTGTAGCTTCACCACCACCTGTAGCAACTACTTGCAGACTAGTGTAACA  599

seq1  GACCAAAGAGACAGGAAGAGGACTGACATCAGGACAGGAATAGAAATTTA  626
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAAGAGACAGGAAGAGGACTGACATCAGGACAGGAATAGAAATTTA  649

seq1  GTTGTAATTTCTATTGCTAAGTTTTTGAAGACTGAAAATAAATTATAATC  676
      |||||||||| ||||| |||||||||||||||||||||||||||||||||
seq2  GTTGTAATTTTTATTGATAAGTTTTTGAAGACTGAAAATAAATTATAATC  699

seq1  TGGGAAAGTAAAACACTCAGCAGTTAAGAGCACTGACTGCTATTTCAGAG  726
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAAGTAAAACACTCAGCAGTTAAGAGCACTGACTGCTATTTCAGAG  749

seq1  AACCCCAATTTGATTCCTAGTACCCACATGGCAGCTCACAACTGTCTGTA  776
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCAATTTGATTCCTAGTACCCACATGGCAGCTCACAACTGTCTGTA  799

seq1  ACTCCAGTGTGAGGAATACAACAGTTTCTTCTGGTCTGCGAGGATTTTAG  826
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ACTCCAGTGTGAGGAATACAACAGTTTCTTGTGGTCTGCGAGGATTTTAG  849

seq1  TTATAGCACACATATATAAGCAGGCAAAACATTCACACATTAAGGACATT  876
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGCACACATATATAAGCAGGCAAAACATTCACACATTAAGGACATT  899

seq1  TTTAAATAAATTAAGCATAAACAGAATTTTCTGAAAGAATAAATGGAACC  926
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTTAAATAAATTAAGCATAAACAGAATTTTTTGAAAGAATAAATGGAACC  949

seq1  TGTTTTTGTTATAAAGACAATTTGAAGCTTTTCTACGACCACCTCCAATA  976
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGTTTTTGTTATAAAGACAATTTGAAGCTTTTTTACGACCACCTCCAATA  999

seq1  CGACCCATTTAACTAGTCCACAGGTAGGAAAGTATAAAAAAAAAAAAAAA  1026
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACCCATTTAACTAGTCCACAGGTAGGAAAGTATAAAAAAAAAAAAAAA  1049

seq1  AAAGGGTAAGAGAGGGACAGCTTAGCTTATATGCCCACCCCGTTTTTCCT  1076
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGTAAGAGAGGGACAGCTTAGCTTATATGCCCACCCCGTTTTTCCT  1099

seq1  CACTAATAAAATTTGCTTACGTGACAAAAGTGAATTC  1113
      |||||||||||||||||||||||||||||||||||||
seq2  CACTAATAAAATTTGCTTACGTGACAAAAGTGAATTC  1136