BAC Information

Click to search

BAC

Clone NameB6Ng01-199I19
Chromosome1 (Build37)
Map Location 166,721,891 - 166,860,371
singlet/doubletdoublet
Overlap geneDpt
Upstream geneKifap3, Scyl3, BC055324, 2810422O20Rik, Sele, Sell, Selp, F5, Slc19a2, 4930455F23Rik, Blzf1, Nme7, Atp1b1, LOC100040065
Downstream geneXcl1, 1700029M03Rik, Tbx19, Sft2d2, Tiprl, Gpr161, Iqwd1, Brp44, Sacy, Ppia-ps1-1625, Mpzl1, Rcsd1, Creg1, Cd247, Pou2f1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-199I19.bB6Ng01-199I19.g
ACCGA020854GA020855
length1,119759
definitionB6Ng01-199I19.b B6Ng01-199I19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(166,721,891 - 166,723,061)(166,859,614 - 166,860,371)
sequence
gaattctttgtttagctctgagccccactttttattagggtcatttggtt
ctttggtaaaagactattatttaatagaggtctcagaacaatcttttttc
tttaaacttttagattataattgcatcatttcccctttccttttcctgtc
tcaaaccctctcatacacacctccttgctctttttcaaattcatagcctg
tttttaaaattgttgtgatatcatatatgtgtatatgtgtgtgtgtatat
atatatatatatatatatacaaatatgttcctcaatataatctgctcagt
cttagcaatgttactcgtatgtatattttcagggctgatcatttggtatt
ggataaccaaccagtgtgctcttctcttagggaagactatttcccccatg
ctcagcatttcttagttgcttgtgggtctttgtaattcaatgattctcaa
tcagagatgatttttgtcccccaagagacttttggcaatgtttggaggct
cttctggttgttacaatggagacgacaggagtacgtctgaaatcttattg
atagaggccaggcatgatgctcaagtgctgcagtattcagaatcctccac
agcagagattcactgggtctaaagaatcagtagcagtggagtgggggaaa
cttgatgctaggtcattaagctttcttacagggattctactctgatagtt
cccacttggaatccttcttctcttcaggactacatgcagtgtcctatggt
cctactgtgacagttgagtacctcgggcaataaaatctcctcactaagag
aaccaaactgattatttcaagtctgtacagtgtcctgcgaaaacagaggc
aagttaacattgacctttttgaaatgtatttacttttttttatgtgcatt
gatgtttttctgaatgcatgtctgtgtgaggatgttagatcttggagtta
cagattagtttgtgagctgcccatgtgggttgctgagattgaaccccagg
tcctcttggaaagaacagttaagtgctttttaaccaactggagccattct
cttcagccccaacaattggacttttttaaaagcctttggaatttgcctac
gccccaaatgttttacctt
gaattcagacggaacagttggaaatgaggctctgtgtttgaagttctgca
ttctcttcagaagtcagttctcccgggaccttactatacaagagggcata
atgaccagatgacttaagtagacacagtattcttatttattcttatgtta
tccccttccttacttcataattaatttattaaattaccacttactaaggg
gcttatatgtcccagagctgaacatctagcagcgagcagaaaaagtccct
cttcattttgatagaactggggccttctttcccctactcctcaagccttt
gcatccccaggcctttgcagatcatagcagtgcagaggtaaaaccagaca
tctgtctctggtcccacaactaaaggaagcttgtagtgtgataacaaaaa
catatccagagcaagagtcttgggtgcactggagcaaatttgttaagatc
ttagcatatagggaaggtcagaatagcttttatcctggaaataacacaag
accagagggatgagacagttgtcgggttccagtacattcctggcaagaca
aacaaatagcacgcatgaaagactgatggggagaaagatcttgatgtgct
agggaggttgagacatttgctatacccaagaaacaaaatggaggctacac
agcaatccacaggggcaaagggaagtcagagagacagtgaacacccagga
aggccctgtctccgagaccacttcatttaaagtctatggtggtggtggtt
ggtggggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_166721891_166723061
seq2: B6Ng01-199I19.b_45_1163

seq1  GAATTCTTTGTTTAGCTCTGAGCCCCACTTTTTATTAGGGTCATTTGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTAGCTCTGAGCCCCACTTTTTATTAGGGTCATTTGGTT  50

seq1  CTTTGGTAAAAGACTATTATTTAATAGAGGTCTCAGAACAATCTTTTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGTAAAAGACTATTATTTAATAGAGGTCTCAGAACAATCTTTTTTC  100

seq1  TTTAAACTTTTAGATTATAATTGCATCATTTCCCCTTTCCTTTTCCTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACTTTTAGATTATAATTGCATCATTTCCCCTTTCCTTTTCCTGTC  150

seq1  TCAAACCCTCTCATACACACCTCCTTGCTCTTTTTCAAATTCATAGCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACCCTCTCATACACACCTCCTTGCTCTTTTTCAAATTCATAGCCTG  200

seq1  TTTTTAAAATTGTTGTGATATCATATATGTGTATATGTGTGTGTGTATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAATTGTTGTGATATCATATATGTGTATATGTGTGTGTGTATAT  250

seq1  ATATATATATATATATATACAAATATGTTCCTCAATATAATCTGCTCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATACAAATATGTTCCTCAATATAATCTGCTCAGT  300

seq1  CTTAGCAATGTTACTCGTATGTATATTTTCAGGGCTGATCATTTGGTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCAATGTTACTCGTATGTATATTTTCAGGGCTGATCATTTGGTATT  350

seq1  GGATAACCAACCAGTGTGCTCTTCTCTTAGGGAAGACTATTTCCCCCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAACCAACCAGTGTGCTCTTCTCTTAGGGAAGACTATTTCCCCCATG  400

seq1  CTCAGCATTTCTTAGTTGCTTGTGGGTCTTTGTAATTCAATGATTCTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCATTTCTTAGTTGCTTGTGGGTCTTTGTAATTCAATGATTCTCAA  450

seq1  TCAGAGATGATTTTTGTCCCCCAAGAGACTTTTGGCAATGTTTGGAGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGATGATTTTTGTCCCCCAAGAGACTTTTGGCAATGTTTGGAGGCT  500

seq1  CTTCTGGTTGTTACAATGGAGACGACAGGAGTACGTCTGAAATCTTATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGTTGTTACAATGGAGACGACAGGAGTACGTCTGAAATCTTATTG  550

seq1  ATAGAGGCCAGGCATGATGCTCAAGTGCTGCAGTATTCAGAATCCTCCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGGCCAGGCATGATGCTCAAGTGCTGCAGTATTCAGAATCCTCCAC  600

seq1  AGCAGAGATTCACTGGGTCTAAAGAATCAGTAGCAGTGGAGTGGGGGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGATTCACTGGGTCTAAAGAATCAGTAGCAGTGGAGTGGGGGAAA  650

seq1  CTTGATGCTAGGTCATTAAGCTTTCTTACAGGGATTCTACTCTGATAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATGCTAGGTCATTAAGCTTTCTTACAGGGATTCTACTCTGATAGTT  700

seq1  CCCACTTGGAATCCTTCTTCTCTTCAGGACTACATGCAGTGTCCTATGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTTGGAATCCTTCTTCTCTTCAGGACTACATGCAGTGTCCTATGGT  750

seq1  CCTACTGTGACAGTTGAGTACCTCGGGCAATAAAATCTCCTCACTAAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTGTGACAGTTGAGTACCTCGGGCAATAAAATCTCCTCACTAAGAG  800

seq1  AACCAAACTGATTATTTCAAGTCTGTACAGTGTCCTGCGAAAACAGAGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAACTGATTATTTCAAGTCTGTACAGTGTCCTGCGAAAACAGAGGC  850

seq1  AAGTTAACATTGACC-TTTTGAAATGTATTTACTTTTTTTTATGTGCATT  899
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AAGTTAACATTGACCTTTTTGAAATGTATTTACTTTTTTTTATGTGCATT  900

seq1  GATGTTTTTTCTGAATGCATGTCTGTGTGAGGATGTTAGATCTTGGAGTT  949
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GATG-TTTTTCTGAATGCATGTCTGTGTGAGGATGTTAGATCTTGGAGTT  949

seq1  ACAGA-TAG-TTGTGAGCTG-CCATGTGGG-TGCTGAGATTTGAACCCAG  995
      ||||| ||| |||||||||| ||||||||| ||||||||||  | |||||
seq2  ACAGATTAGTTTGTGAGCTGCCCATGTGGGTTGCTGAGATTGAACCCCAG  999

seq1  GTCCTCT--GGAAGAACAG-TCAGTGC-TTTTAACC-ACT-GAGCCA-TC  1038
      |||||||  | |||||||| | ||||| |||||||| ||| |||||| ||
seq2  GTCCTCTTGGAAAGAACAGTTAAGTGCTTTTTAACCAACTGGAGCCATTC  1049

seq1  TCTCCAGCCCCACCA--TTGACTTTTTTAAAAG-CTTTG---ATTGTCTC  1082
      ||| |||||||| ||  | |||||||||||||| |||||    ||| || 
seq2  TCTTCAGCCCCAACAATTGGACTTTTTTAAAAGCCTTTGGAATTTGCCTA  1099

seq1  AGCCCCAAATTGTTTACCTTCTAACTGTTTGAAGAGTAACTGGTCTACCA  1132
       |||||||||  ||||||||                              
seq2  CGCCCCAAATGTTTTACCTT------------------------------  1119

seq1  CATAGAAAGCAGGTTTCAAGCGCATAGTTGTTTTACCTT  1171
                                             
seq2  ---------------------------------------  1119

seq1: chr1_166859614_166860371
seq2: B6Ng01-199I19.g_64_822 (reverse)

seq1  ATCCCCACC-ACCACCACCACCATAGACTTTAAATGAAGTGGTCTCGGAG  49
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCACCAACCACCACCACCATAGACTTTAAATGAAGTGGTCTCGGAG  50

seq1  ACAGGGCCTTCCTGGGTGTTCACTGTCTCTCTGACTTCCCTTTGCCCCTG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGCCTTCCTGGGTGTTCACTGTCTCTCTGACTTCCCTTTGCCCCTG  100

seq1  TGGATTGCTGTGTAGCCTCCATTTTGTTTCTTGGGTATAGCAAATGTCTC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTGCTGTGTAGCCTCCATTTTGTTTCTTGGGTATAGCAAATGTCTC  150

seq1  AACCTCCCTAGCACATCAAGATCTTTCTCCCCATCAGTCTTTCATGCGTG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCCCTAGCACATCAAGATCTTTCTCCCCATCAGTCTTTCATGCGTG  200

seq1  CTATTTGTTTGTCTTGCCAGGAATGTACTGGAACCCGACAACTGTCTCAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTGTTTGTCTTGCCAGGAATGTACTGGAACCCGACAACTGTCTCAT  250

seq1  CCCTCTGGTCTTGTGTTATTTCCAGGATAAAAGCTATTCTGACCTTCCCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTGGTCTTGTGTTATTTCCAGGATAAAAGCTATTCTGACCTTCCCT  300

seq1  ATATGCTAAGATCTTAACAAATTTGCTCCAGTGCACCCAAGACTCTTGCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCTAAGATCTTAACAAATTTGCTCCAGTGCACCCAAGACTCTTGCT  350

seq1  CTGGATATGTTTTTGTTATCACACTACAAGCTTCCTTTAGTTGTGGGACC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATATGTTTTTGTTATCACACTACAAGCTTCCTTTAGTTGTGGGACC  400

seq1  AGAGACAGATGTCTGGTTTTACCTCTGCACTGCTATGATCTGCAAAGGCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAGATGTCTGGTTTTACCTCTGCACTGCTATGATCTGCAAAGGCC  450

seq1  TGGGGATGCAAAGGCTTGAGGAGTAGGGGAAAGAAGGCCCCAGTTCTATC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGATGCAAAGGCTTGAGGAGTAGGGGAAAGAAGGCCCCAGTTCTATC  500

seq1  AAAATGAAGAGGGACTTTTTCTGCTCGCTGCTAGATGTTCAGCTCTGGGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAAGAGGGACTTTTTCTGCTCGCTGCTAGATGTTCAGCTCTGGGA  550

seq1  CATATAAGCCCCTTAGTAAGTGGTAATTTAATAAATTAATTATGAAGTAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAAGCCCCTTAGTAAGTGGTAATTTAATAAATTAATTATGAAGTAA  600

seq1  GGAAGGGGATAACATAAGAATAAATAAGAATACTGTGTCTACTTAAGTCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGGGATAACATAAGAATAAATAAGAATACTGTGTCTACTTAAGTCA  650

seq1  TCTGGTCATTATGCCCTCTTGTATAGTAAGGTCCCGGGAGAACTGACTTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTCATTATGCCCTCTTGTATAGTAAGGTCCCGGGAGAACTGACTTC  700

seq1  TGAAGAGAATGCAGAACTTCAAACACAGAGCCTCATTTCCAACTGTTCCG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAGAATGCAGAACTTCAAACACAGAGCCTCATTTCCAACTGTTCCG  750

seq1  TCTGAATTC  758
      |||||||||
seq2  TCTGAATTC  759