BAC Information

Click to search

BAC

Clone NameB6Ng01-199J13
Chromosome1 (Build37)
Map Location 195,105,981 - 195,106,987
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnh1, Hhat, A730013G03Rik, Sertad4, LOC100039677, Syt14, AA408296, Irf6, A130010J15Rik, Traf3ip3, Hsd11b1, G0s2
Downstream geneLamb3, Camk1g, LOC667208
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-199J13.bB6Ng01-199J13.g
ACCGA020889GA020890
length1,1671,021
definitionB6Ng01-199J13.b B6Ng01-199J13.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaaatatgtactcactgataagtggatactagcccaaaac
ctaggatacccacgatataagatacaatttcctaaacacatgaaactcaa
gaaaaatgaagactgaagtgtggacactatgcccctccttagaagtggga
acaaaacacccatggaaggagttacagaaacaaagtttggagctgagatg
aaaggatggaccatgtagagactgccatatccagggatccaccccataat
cagcatccaaacgctgacaccattgcatatactagcaagattttatcgaa
aggacccagatgtagctgtctcttgtgagactatcccggggcctagcaac
acagaagtggatgctcacagtcagctaatggatggatccacagggctccc
aatggagagctagaagaagtatccaggagctaaagggatctcaacctaat
aggtggaaaaacattatgaactacagtacccttgagctctttgactctta
gctgcatatgatccaaaagatgccttagtcggtcatcacctgaagaaagc
cattgtacactgcagactttcggtgccgtacaggaaatgtctatggtctc
tatatgtggtggaagtt
gtgtctacatctcccaaggtagatgtacaggaagctgatgaaagtgaatg
agtgtcaggtgccaggaggaagcacacagagtaaggctgaccagtgtgag
ccaggttctccgcctctagtcattttcctggtcagtcctcagcaagcctg
aagtggacgttttccctccatcgtgctgcttgaattttgctctattgtcc
cacagcaaatggccactgattcaacagtttcagactctgacgtgttggct
ctcactcctgcgggaaagaagtccaaccacagcagcccaggtctcacaga
gttgacacccagatgctgcactgagtctcctctagaacacagggtcttct
gttatgttcatatggctacagagacacccccatttccttgctagctgaag
ctggggccgtactgcctttccatctgcaaagttagagggaagaagcctgt
cactcgagactcttttcagcctttgattctcttcttcagaaaggcctgat
tcccagccatgaacttacctggtgaatctgatccgtctgagtgacatctt
ttccatgaaaccagttgtgccctatgacagtcagatttttagagtcagct
aagtagttaagagcacttactgctgttaaagagcatccaggtcaggctcc
cagcatgcacctgaagagcatccaggttaggctcccagcatgcacctgaa
aagcatccaggtcaggctcccagcatgcacctgaagagcatccaggttag
gctcccagcatgcacttgaaggcccacctgtaattccagttctagggggg
ggctgacaccttcttctggtttctgtgggcttgtatacacatggaaccac
aggcacaaggcagacaaaaattagctatacacataagacaaaacaagtta
ttcattaagagaggcttccagtcttgagtccttcagaaagaacctgtcag
accttacagaaggaaaggaatccacgactttgccatgaccctggttgaga
agaaagataagagacttacgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_195105981_195106987
seq2: B6Ng01-199J13.g_76_1096 (reverse)

seq1  GCGT-AGTCTCCTATC-TTCTTCTCAACCA-GGTC-TG--CAAGTCGTGG  44
      |||| |||||| |||| ||||||||||||| |||| ||   |||||||||
seq2  GCGTAAGTCTCTTATCTTTCTTCTCAACCAGGGTCATGGCAAAGTCGTGG  50

seq1  -TTCCTTTCCTTCTGTTATGTCTGACAG--TCTTTCTG-AGGACTC-AGG  89
       ||||||||||||||| | |||||||||  |||||||| ||||||| || 
seq2  ATTCCTTTCCTTCTGTAAGGTCTGACAGGTTCTTTCTGAAGGACTCAAGA  100

seq1  CTGG-AGCCTCTCTTAATGATTTACTTGTTTTTGTCTTATGTGTATGGCT  138
      |||| ||||||||||||||| | ||||| ||||||||||||||||| |||
seq2  CTGGAAGCCTCTCTTAATGAATAACTTG-TTTTGTCTTATGTGTATAGCT  149

seq1  -ATTTTTGTCTGCCTTTGTGCCTGT-GTTCCATGTGTATAC-AGCCCACA  185
       ||||||||||||| |||||||||| ||||||||||||||| ||||||||
seq2  AATTTTTGTCTGCC-TTGTGCCTGTGGTTCCATGTGTATACAAGCCCACA  198

seq1  GAAACCAGAAGAAGGTGTCAG-CCCCCCCTAGAACTGGAATTACAGGTGG  234
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GAAACCAGAAGAAGGTGTCAGCCCCCCCCTAGAACTGGAATTACAGGTGG  248

seq1  GCCTTCAAGTGCATGCTGGGAGCCTAACCTGGATGCTCTTCAGGTGCATG  284
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCAAGTGCATGCTGGGAGCCTAACCTGGATGCTCTTCAGGTGCATG  298

seq1  CTGGGAGCCTGACCTGGATGCTTTTCAGGTGCATGCTGGGAGCCTAACCT  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAGCCTGACCTGGATGCTTTTCAGGTGCATGCTGGGAGCCTAACCT  348

seq1  GGATGCTCTTCAGGTGCATGCTGGGAGCCTGACCTGGATGCTCTTTAACA  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCTCTTCAGGTGCATGCTGGGAGCCTGACCTGGATGCTCTTTAACA  398

seq1  GCAGTAAGTGCTCTTAACTACTTAGCTGACTCTAAAAATCTGACTGTCAT  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTAAGTGCTCTTAACTACTTAGCTGACTCTAAAAATCTGACTGTCAT  448

seq1  AGGGCACAACTGGTTTCATGGAAAAGATGTCACTCAGACGGATCAGATTC  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCACAACTGGTTTCATGGAAAAGATGTCACTCAGACGGATCAGATTC  498

seq1  ACCAGGTAAGTTCATGGCTGGGAATCAGGCCTTTCTGAAGAAGAGAATCA  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGTAAGTTCATGGCTGGGAATCAGGCCTTTCTGAAGAAGAGAATCA  548

seq1  AAGGCTGAAAAGAGTCTCGAGTGACAGGCTTCTTCCCTCTAACTTTGCAG  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTGAAAAGAGTCTCGAGTGACAGGCTTCTTCCCTCTAACTTTGCAG  598

seq1  ATGGAAAGGCAGTACGGCCCCAGCTTCAGCTAGCAAGGAAATGGGGGTGT  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAGGCAGTACGGCCCCAGCTTCAGCTAGCAAGGAAATGGGGGTGT  648

seq1  CTCTGTAGCCATATGAACATAACAGAAGACCCTGTGTTCTAGAGGAGACT  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTAGCCATATGAACATAACAGAAGACCCTGTGTTCTAGAGGAGACT  698

seq1  CAGTGCAGCATCTGGGTGTCAACTCTGTGAGACCTGGGCTGCTGTGGTTG  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCAGCATCTGGGTGTCAACTCTGTGAGACCTGGGCTGCTGTGGTTG  748

seq1  GACTTCTTTCCCGCAGGAGTGAGAGCCAACACGTCAGAGTCTGAAACTGT  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCTTTCCCGCAGGAGTGAGAGCCAACACGTCAGAGTCTGAAACTGT  798

seq1  TGAATCAGTGGCCATTTGCTGTGGGACAATAGAGCAAAATTCAAGCAGCA  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCAGTGGCCATTTGCTGTGGGACAATAGAGCAAAATTCAAGCAGCA  848

seq1  CGATGGAGGGAAAACGTCCACTTCAGGCTTGCTGAGGACTGACCAGGAAA  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGGAGGGAAAACGTCCACTTCAGGCTTGCTGAGGACTGACCAGGAAA  898

seq1  ATGACTAGAGGCGGAGAACCTGGCTCACACTGGTCAGCCTTACTCTGTGT  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTAGAGGCGGAGAACCTGGCTCACACTGGTCAGCCTTACTCTGTGT  948

seq1  GCTTCCTCCTGGCACCTGACACTCATTCACTTTCATCAGCTTCCTGTACA  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTCCTGGCACCTGACACTCATTCACTTTCATCAGCTTCCTGTACA  998

seq1  TCTACCTTGGGAGATGTAGACAC  1007
      |||||||||||||||||||||||
seq2  TCTACCTTGGGAGATGTAGACAC  1021