BAC Information

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BAC

Clone NameB6Ng01-200A20
Chromosome1 (Build37)
Map Location 142,996,031 - 143,127,401
singlet/doubletdoublet
Overlap genenone
Upstream geneCfh, Kcnt2
Downstream geneEG226472, LOC639376
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-200A20.bB6Ng01-200A20.g
ACCGA021221GA021222
length1,0331,099
definitionB6Ng01-200A20.b B6Ng01-200A20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(142,996,031 - 142,997,064)(143,126,292 - 143,127,401)
sequence
gaattccttttgaaataatttagaaaaaaaacaggcatctaaaaaaagtt
actttttacataaagtataaaaatataatttcttattagataaacattag
agtttaccagcataaaaatattacttgataattaatcagaagtctttagg
aataatggactggaagaaaccagatcagggaagttgtaggtccaagaaga
aaatgaataatgaattgatttattaatagatgaaactagtaacaactgtc
tctacaaaaaatatagtctagtgtactgggaaggttacacatttaaagag
ggaccatattttacatttttatgttcatatataatactgcagtgaaagtg
gatatagaaaagtcttggcaatatctcaaaaatgataaaaatgtgtaaaa
ttcaatccagtacaaaagagagtaaaataaaatttaaatatacgttaatc
tgcaacacaacaagattcataaaatataaaatagctattgaccttcaaaa
acgatggggaattttagttcaaaaatatgtatacagctgtttccaaggga
atactgatcaaaacaaagacaacttgtcttcaaaataaaatggcaatagg
aaagaacattatatagtctttctttaacccattggaacagtttctttttt
cattaatttttttatttaattacattccaaatattatctatattccgggt
ctctcctcaaagacctcttcaccccatgctttctccccgttggctctgag
agagtgcccctccaccaagcaaccacccgacacattcatccatactcctt
caccttaccatgctcagcatccacattccctaggatatcacagattagaa
cagttttaaatacagtatctgacactatatccaagttagtctagagctca
ctgtgtaccccaagttggtcttgtgttctcaatgtcatcctgattcagcc
ccccgagtgctgattacctaggtgaggcgccttttattgggttgaaggtt
gagaaaaatattcgttggactggcaattcatta

gaattcactcagcggggtcctggaaccaaatgtctgctaccgatgctcag
gcaaagtgctccctctccgctcggacccctttcctctggcctggaaggtg
gcaggatgtctggggcctgtgcagaatgcactcagtggggtcctggaacc
aggatgtctgctgatgatgctcaggcaaagtgctccctctctgctcggac
ccctttcctctgggaaggtggctggatgtctggggactgtgcagaatcct
cactctactttcaaagtgataattagtctgtgaacccattaattcaaaag
taactgccaatagcagtgccatattgaaaatactaaatataacatctata
aaacttcataaaaatcttatatatttctcaaagtttatttagttaaatgg
acaaagcagtttaatgaacagttttgaaaataaatgtgttataaaattca
ctcttagttacccactaaattcttactgcttctgatttgccaatagaatt
atttttacaaactgaagtgatgtttttttttttaccactcaaagatttaa
caatagctatgtgagagttggaattagtgaaatataacataagcatatgc
acatgttaatttatgtgcatgttttataaaatctttcctggagtttagca
tttgaatagatacgttatgagattcataagattctctttgggatatcaac
actaaggttatttatatgaaatattgtatttcaaatctcattctttaaac
aataaaattaaaaccaaggccagtgatttggcacatttggtagagattca
taccattaaactaatgaaccaatccatagaatctacttagttgaagtaga
gaaatgacttctgaaatttgtcctttaacccctacacaggtgccatgaca
tgaacacacataactacacacacacaaaaaacatagttttaaaaatgaaa
tttaattaagtcattaaaaatccttttttaatagcagcttctttaaaaga
aaagagatgtgaaatacctctttcgttgtacaaaactgatttgtgtgagt
ctcagcctatttgagtcaatcagaatgaatcatggacaattataatgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_142996031_142997064
seq2: B6Ng01-200A20.b_46_1078

seq1  GAATTCCTTTTGAAATAATTTAGAAAAAAAACAGGCATCTAAAAAAAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTTGAAATAATTTAGAAAAAAAACAGGCATCTAAAAAAAGTT  50

seq1  ACTTTTTACATAAAGTATAAAAATATAATTTCTTATTAGATAAACATTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTACATAAAGTATAAAAATATAATTTCTTATTAGATAAACATTAG  100

seq1  AGTTTACCAGCATAAAAATATTACTTGATAATTAATCAGAAGTCTTTAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTACCAGCATAAAAATATTACTTGATAATTAATCAGAAGTCTTTAGG  150

seq1  AATAATGGACTGGAAGAAACCAGATCAGGGAAGTTGTAGGTCCAAGAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGGACTGGAAGAAACCAGATCAGGGAAGTTGTAGGTCCAAGAAGA  200

seq1  AAATGAATAATGAATTGATTTATTAATAGATGAAACTAGTAACAACTGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAATAATGAATTGATTTATTAATAGATGAAACTAGTAACAACTGTC  250

seq1  TCTACAAAAAATATAGTCTAGTGTACTGGGAAGGTTACACATTTAAAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAAAAAATATAGTCTAGTGTACTGGGAAGGTTACACATTTAAAGAG  300

seq1  GGACCATATTTTACATTTTTATGTTCATATATAATACTGCAGTGAAAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCATATTTTACATTTTTATGTTCATATATAATACTGCAGTGAAAGTG  350

seq1  GATATAGAAAAGTCTTGGCAATATCTCAAAAATGATAAAAATGTGTAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATAGAAAAGTCTTGGCAATATCTCAAAAATGATAAAAATGTGTAAAA  400

seq1  TTCAATCCAGTACAAAAGAGAGTAAAATAAAATTTAAATATACGTTAATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATCCAGTACAAAAGAGAGTAAAATAAAATTTAAATATACGTTAATC  450

seq1  TGCAACACAACAAGATTCATAAAATATAAAATAGCTATTGACCTTCAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACACAACAAGATTCATAAAATATAAAATAGCTATTGACCTTCAAAA  500

seq1  ACGATGGGGAATTTTAGTTCAAAAATATGTATACAGCTGTTTCCAAGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATGGGGAATTTTAGTTCAAAAATATGTATACAGCTGTTTCCAAGGGA  550

seq1  ATACTGATCAAAACAAAGACAACTTGTCTTCAAAATAAAATGGCAATAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGATCAAAACAAAGACAACTTGTCTTCAAAATAAAATGGCAATAGG  600

seq1  AAAGAACATTATATAGTCTTTCTTTAACCCATTGGAACAGTTTCTTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACATTATATAGTCTTTCTTTAACCCATTGGAACAGTTTCTTTTTT  650

seq1  CATTAATTTTTTTATTTAATTACATTCCAAATATTATCTATATTCCGGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAATTTTTTTATTTAATTACATTCCAAATATTATCTATATTCCGGGT  700

seq1  CTCTCCTCAAAGACCTCTTCACCCCATGCTTTCTCCCCGTTGGCTCTGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTCAAAGACCTCTTCACCCCATGCTTTCTCCCCGTTGGCTCTGAG  750

seq1  AGAGTGCCCCTCCACCAAGCAACCACCCGACACATTCATCCATACTCCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGCCCCTCCACCAAGCAACCACCCGACACATTCATCCATACTCCTT  800

seq1  CACCTTACCATGCTCAGCATCCACATTCCCTAGGATATCACAGATTAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTACCATGCTCAGCATCCACATTCCCTAGGATATCACAGATTAGAA  850

seq1  CAGTTTTAAATACAGTATCTGACACTATATCCAAGTTAGTCTAGAGCTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTAAATACAGTATCTGACACTATATCCAAGTTAGTCTAGAGCTCA  900

seq1  CTGTGTACCCCAAGTTGGTCTTGTGTTCTCAATGTCATCCTGATTCAG-C  949
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CTGTGTACCCCAAGTTGGTCTTGTGTTCTCAATGTCATCCTGATTCAGCC  950

seq1  CCCCGAGTGCTGATTACCTAGGTGAGGCGCCTTTTATTGGGTTG-AGGTT  998
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CCCCGAGTGCTGATTACCTAGGTGAGGCGCCTTTTATTGGGTTGAAGGTT  1000

seq1  GAGAAAAATAATTCGTTTGGACTGGCAATTTCATTA  1034
      ||||||||| ||||| |||||||||||| |||||||
seq2  GAGAAAAAT-ATTCG-TTGGACTGGCAA-TTCATTA  1033


seq1: chr1_143126292_143127401
seq2: B6Ng01-200A20.g_63_1161 (reverse)

seq1  TGCATTATAATATGCTCATGATTCATTCTGAATGGAACTCAAAATAAGCT  50
      ||||||||||| ||  ||||||||||||||| ||  |||| ||||| || 
seq2  TGCATTATAAT-TGTCCATGATTCATTCTGATTG--ACTC-AAATAGGC-  45

seq1  TGAGACCTCACACAAATCCAGTTTTTGTACAACGAAAGAGGTATTTCACA  100
      ||||| ||||||||||| ||| ||||||||||||||||||||||||||||
seq2  TGAGA-CTCACACAAAT-CAG-TTTTGTACAACGAAAGAGGTATTTCACA  92

seq1  TCTCTTTTCTTTTAAAGAAGCTGCTATTAAAAAGGGATTTTTTAATGACT  150
      ||||||||||||||||||||||||||||||||| ||| ||||||||||| 
seq2  TCTCTTTTCTTTTAAAGAAGCTGCTATTAAAAAAGGA-TTTTTAATGAC-  140

seq1  TTAATTTAATTTCATTTTTAAAACTATGTTTTTTTGTGTGTGTGTAGTTA  200
      |||||| ||||||||||||||||||||| |||||||||||||||||||||
seq2  TTAATTAAATTTCATTTTTAAAACTATG-TTTTTTGTGTGTGTGTAGTTA  189

seq1  TGTGTGTTCATGTCATGGCACCTGTGTAGGGGTTAAAGGACAAATTTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTTCATGTCATGGCACCTGTGTAGGGGTTAAAGGACAAATTTCAG  239

seq1  AAGTCATTTCTCTACTTCAACTAAGTAGATTCTATGGATTGGTTCATTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCATTTCTCTACTTCAACTAAGTAGATTCTATGGATTGGTTCATTAG  289

seq1  TTTAATGGTATGAATCTCTACCAAATGTGCCAAATCACTGGCCTTGGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGGTATGAATCTCTACCAAATGTGCCAAATCACTGGCCTTGGTTT  339

seq1  TAATTTTATTGTTTAAAGAATGAGATTTGAAATACAATATTTCATATAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTATTGTTTAAAGAATGAGATTTGAAATACAATATTTCATATAAA  389

seq1  TAACCTTAGTGTTGATATCCCAAAGAGAATCTTATGAATCTCATAACGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTTAGTGTTGATATCCCAAAGAGAATCTTATGAATCTCATAACGTA  439

seq1  TCTATTCAAATGCTAAACTCCAGGAAAGATTTTATAAAACATGCACATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTCAAATGCTAAACTCCAGGAAAGATTTTATAAAACATGCACATAA  489

seq1  ATTAACATGTGCATATGCTTATGTTATATTTCACTAATTCCAACTCTCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACATGTGCATATGCTTATGTTATATTTCACTAATTCCAACTCTCAC  539

seq1  ATAGCTATTGTTAAATCTTTGAGTGGTAAAAAAAAAAACATCACTTCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTATTGTTAAATCTTTGAGTGGTAAAAAAAAAAACATCACTTCAGT  589

seq1  TTGTAAAAATAATTCTATTGGCAAATCAGAAGCAGTAAGAATTTAGTGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAAAATAATTCTATTGGCAAATCAGAAGCAGTAAGAATTTAGTGGG  639

seq1  TAACTAAGAGTGAATTTTATAACACATTTATTTTCAAAACTGTTCATTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAAGAGTGAATTTTATAACACATTTATTTTCAAAACTGTTCATTAA  689

seq1  ACTGCTTTGTCCATTTAACTAAATAAACTTTGAGAAATATATAAGATTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTTTGTCCATTTAACTAAATAAACTTTGAGAAATATATAAGATTTT  739

seq1  TATGAAGTTTTATAGATGTTATATTTAGTATTTTCAATATGGCACTGCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAGTTTTATAGATGTTATATTTAGTATTTTCAATATGGCACTGCTA  789

seq1  TTGGCAGTTACTTTTGAATTAATGGGTTCACAGACTAATTATCACTTTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAGTTACTTTTGAATTAATGGGTTCACAGACTAATTATCACTTTGA  839

seq1  AAGTAGAGTGAGGATTCTGCACAGTCCCCAGACATCCAGCCACCTTCCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGAGTGAGGATTCTGCACAGTCCCCAGACATCCAGCCACCTTCCCA  889

seq1  GAGGAAAGGGGTCCGAGCAGAGAGGGAGCACTTTGCCTGAGCATCATCAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAAGGGGTCCGAGCAGAGAGGGAGCACTTTGCCTGAGCATCATCAG  939

seq1  CAGACATCCTGGTTCCAGGACCCCACTGAGTGCATTCTGCACAGGCCCCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACATCCTGGTTCCAGGACCCCACTGAGTGCATTCTGCACAGGCCCCA  989

seq1  GACATCCTGCCACCTTCCAGGCCAGAGGAAAGGGGTCCGAGCGGAGAGGG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCCTGCCACCTTCCAGGCCAGAGGAAAGGGGTCCGAGCGGAGAGGG  1039

seq1  AGCACTTTGCCTGAGCATCGGTAGCAGACATTTGGTTCCAGGACCCCGCT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTTTGCCTGAGCATCGGTAGCAGACATTTGGTTCCAGGACCCCGCT  1089

seq1  GAGTGAATTC  1110
      ||||||||||
seq2  GAGTGAATTC  1099


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