BAC Information

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BAC

Clone NameB6Ng01-200B05
Chromosome1 (Build37)
Map Location 129,837,808 - 129,998,802
singlet/doubletdoublet
Overlap geneRab3gap1, Zranb3, LOC666778, LOC100042670, EG666784
Upstream geneLOC383559, Mgat5, LOC667090, Tmem163, Acmsd, Ccnt2, Ysk4
Downstream geneR3hdm1, LOC667109, LOC100042111, Ubxd2, Lct, Mcm6, Dars, LOC620659, Cxcr4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-200B05.bB6Ng01-200B05.g
ACCGA021237GA021238
length1,1671,091
definitionB6Ng01-200B05.b B6Ng01-200B05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(129,837,808 - 129,838,969)(129,997,747 - 129,998,802)
sequence
gaattcagcaaaaataactgctttgttccggtcttactaagttgaattat
ttctacacatctgtccttaaatttatggtttgtcaagcatcttttgaaac
agcatcttgtttgaaagagtgagggttttctgtcatttcctcattaaatg
accctgcacttcacctgttgagccgtcagatgcatgagcctgagcctctg
ctggccatgtgtggtctgtgatgtggttctgtgcaccttcagtgcccttg
gatggagtcatgcccacacagtgcgtgccattcctgatgtgcccccgagt
ctgccccggcccttagctccctcggtccctttcatcactgtttcttttct
cacctttctcaagctgactgaatcttctgatgaggtaacaacatggcctt
atgtccctcatagttctttgtccttccccatccctctaacttcataaggt
catcttaactaaccatctctaaccggctggatgtggcatcccctctggct
gtacagcttaacttgacttcatgtttccattgcccaaagaattttcccaa
gcagtggaatcatgaaagaaggacagtattgcgttctgaaggctcccatt
ggctgcactggtgcagtttgaatgtacaagcaatgccttcagctttgagc
acttttcctctgtggctatggccatgggcatctgttagcttgctgtcaca
ttagatgcccagtagtcaaagccagtgttcctggttctaatttggcaaga
gaatctaaaaaagaactagctgagagagcagagataaaattgcctttctc
gacttgaaagtaagtctgtcctgttaacgtctaactcagatgtgagtcac
tgcctgcagaaatgcaaggcaccagtgcagctctgccactgctgaggagc
cccaatgcccttgcttttcagagcagagtgctggtcacccacctctgcct
gccctcactagtgcccaagctctttccagctttctgcttttctgtttttg
gtctttttgagcaatcatacacacagtggaatataatgcattccaagtga
caccaggtcattgtgttgttttcttgtggtttatccatctgccctggtat
gtagccttcgacttgactctgatttggtgttctgttctgttcaaagcctg
gcgtcagtggcttctgc
gaattcaccttgtctaaaataacccccccccccgcactgccccctccccc
taaaaaaacccatccagaaatatgaaatggcatgggtgtaattctcgagc
ctgtaatgtaattttctactttgctacttagtcttgcagagccagtgttt
atcagatctgttcactcttgagtttgtagaggatgctttaatttgccttt
agctactgtctgtgaagcagcataggttcatgtcctggaaggtattggaa
attctgaactaattcctcccatttatacaaatagtccccagaagtcagaa
gttgcctttgaacaggatcttaaaaaaaaaaaaagtctcctccatcattt
ttatggagactttgtcttactacttttctcataaatatttattgagcact
tacactagtggtaaatatactaggcttaaaggattgaagagtgcacagaa
aggtaagttttgtttaaaacgagttagaaagattaagcaaaatttatgtt
acttggtctttttaatatctccaaatttagcatcttcatagttatgtttt
gtgtgttgatttggtttcctctttgctttctacttttagatttaaaaacc
attcctttctattttcattatttttattgaagtattaagtctgtgtccag
aactgtttaagaggtgttttatatactatgtggatgagagtcctaactag
tgcaatcccagagacagaaatatatctgcaacttccaagcagacaaaaca
ctcttacttttttaaagaaaataaatgtttttgcttttcaaatataatac
ttttcacgtgtgtgtgtgcaagtgtgtgtgtgtgctatattgaatattta
aacagaaaggcatcattcccaatctaggagtttgagtttcaagtgatact
ttagccattgtcccataaattgcttagttgggattttttttcataaagtc
tctttccagagttaggaagtcaatattgtagttattaatgaacaattcat
atttactgtgaatattaatcttggagcccctaaaagggcctaaggggtgt
tttagtatggtccttttatttttttgaggtgctctgggaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_129837808_129838969
seq2: B6Ng01-200B05.b_43_1209

seq1  GAATTCAGCAAAAATAACTGCTTTGTTCCGGTCTTACTAAGTTGAATTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCAAAAATAACTGCTTTGTTCCGGTCTTACTAAGTTGAATTAT  50

seq1  TTCTACACATCTGTCCTTAAATTTATGGTTTGTCAAGCATCTTTTGAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACACATCTGTCCTTAAATTTATGGTTTGTCAAGCATCTTTTGAAAC  100

seq1  AGCATCTTGTTTGAAAGAGTGAGGGTTTTCTGTCATTTCCTCATTAAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCTTGTTTGAAAGAGTGAGGGTTTTCTGTCATTTCCTCATTAAATG  150

seq1  ACCCTGCACTTCACCTGTTGAGCCGTCAGATGCATGAGCCTGAGCCTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGCACTTCACCTGTTGAGCCGTCAGATGCATGAGCCTGAGCCTCTG  200

seq1  CTGGCCATGTGTGGTCTGTGATGTGGTTCTGTGCACCTTCAGTGCCCTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCATGTGTGGTCTGTGATGTGGTTCTGTGCACCTTCAGTGCCCTTG  250

seq1  GATGGAGTCATGCCCACACAGTGCGTGCCATTCCTGATGTGCCCCCGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAGTCATGCCCACACAGTGCGTGCCATTCCTGATGTGCCCCCGAGT  300

seq1  CTGCCCCGGCCCTTAGCTCCCTCGGTCCCTTTCATCACTGTTTCTTTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCCGGCCCTTAGCTCCCTCGGTCCCTTTCATCACTGTTTCTTTTCT  350

seq1  CACCTTTCTCAAGCTGACTGAATCTTCTGATGAGGTAACAACATGGCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTTCTCAAGCTGACTGAATCTTCTGATGAGGTAACAACATGGCCTT  400

seq1  ATGTCCCTCATAGTTCTTTGTCCTTCCCCATCCCTCTAACTTCATAAGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCCTCATAGTTCTTTGTCCTTCCCCATCCCTCTAACTTCATAAGGT  450

seq1  CATCTTAACTAACCATCTCTAACCGGCTGGATGTGGCATCCCCTCTGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTAACTAACCATCTCTAACCGGCTGGATGTGGCATCCCCTCTGGCT  500

seq1  GTACAGCTTAACTTGACTTCATGTTTCCATTGCCCAAAGAATTTTCCCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGCTTAACTTGACTTCATGTTTCCATTGCCCAAAGAATTTTCCCAA  550

seq1  GCAGTGGAATCATGAAAGAAGGACAGTATTGCGTTCTGAAGGCTCCCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGGAATCATGAAAGAAGGACAGTATTGCGTTCTGAAGGCTCCCATT  600

seq1  GGCTGCACTGGTGCAGTTTGAATGTACAAGCAATGCCTTCAGCTTTGAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCACTGGTGCAGTTTGAATGTACAAGCAATGCCTTCAGCTTTGAGC  650

seq1  ACTTTTCCTCTGTGGCTATGGCCATGGGCATCTGTTAGCTTGCTGTCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTCCTCTGTGGCTATGGCCATGGGCATCTGTTAGCTTGCTGTCACA  700

seq1  TTAGATGCCCAGTAGTCAAAGCCAGTGTTCCTGGTTCTAATTTGGCAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATGCCCAGTAGTCAAAGCCAGTGTTCCTGGTTCTAATTTGGCAAGA  750

seq1  GAATCTAAAAAAGAACTAGCTGAGAGAGCAGAGATAAAATTGCCTTTCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTAAAAAAGAACTAGCTGAGAGAGCAGAGATAAAATTGCCTTTCTC  800

seq1  GACTTGAAAGTAAGTCTGTCCTGTTAACGTCTAACTCAGATGTGAGTCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGAAAGTAAGTCTGTCCTGTTAACGTCTAACTCAGATGTGAGTCAC  850

seq1  TGCCTGCAGAAATGC-AGGCACCAGTGCAGCTCTGCCACTGCTGAGGAGC  899
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TGCCTGCAGAAATGCAAGGCACCAGTGCAGCTCTGCCACTGCTGAGGAGC  900

seq1  CCCAATGCCCTTGCTTTTCAGAGCAGAGTGCTGGTCACCCACCTCTGCCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATGCCCTTGCTTTTCAGAGCAGAGTGCTGGTCACCCACCTCTGCCT  950

seq1  G-CCTCACTAGTGCCCAAGCTCTTTCCAGCTTTCTGCTTTTCTGTTTTTG  998
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCACTAGTGCCCAAGCTCTTTCCAGCTTTCTGCTTTTCTGTTTTTG  1000

seq1  TTC-TTTTGAGCAATCATAACACACAGTGG-ATATAATGCATTTCCAAGT  1046
       || |||||||||||||| ||||||||||| |||||||||| ||||||||
seq2  GTCTTTTTGAGCAATCAT-ACACACAGTGGAATATAATGCA-TTCCAAGT  1048

seq1  GACA-CAGGTCATTGTGT--GTTTCTTGT-GTTTATCCATCTGCCCTTGG  1092
      |||| |||||||||||||   |||||||| |||||||||||||||||  |
seq2  GACACCAGGTCATTGTGTTGTTTTCTTGTGGTTTATCCATCTGCCCT--G  1096

seq1  GTAATGTAGCTTTCGAC-TGGCTCTTGAATTTGGTGTTCTGTTCTGTTCA  1141
      || ||||||| |||||| || ||||   ||||||||||||||||||||||
seq2  GT-ATGTAGCCTTCGACTTGACTCT--GATTTGGTGTTCTGTTCTGTTCA  1143

seq1  AGGC--TGCGGCAGTGGC-TCTGC  1162
      | ||   ||| ||||||| |||||
seq2  AAGCCTGGCGTCAGTGGCTTCTGC  1167

seq1: chr1_129997747_129998802
seq2: B6Ng01-200B05.g_65_1155 (reverse)

seq1  TCTCC---AGCA-CTCAAAAAAATAAAAG--ACATACT-AAACA-CCCTT  42
      |||||   |||| ||||||||||||||||   |||||| ||||| |||||
seq2  TCTCCCAGAGCACCTCAAAAAAATAAAAGGACCATACTAAAACACCCCTT  50

seq1  A-GCCCTTTT-GGGGCTC--AGATTAAATATT--CAGT-AATATG-ATTG  84
      | |||||||| |||||||  ||||| ||||||  |||| |||||| ||||
seq2  AGGCCCTTTTAGGGGCTCCAAGATT-AATATTCACAGTAAATATGAATTG  99

seq1  -TCATT-ATTACTAC-ATATTGACTTC--TACTCTGGAAGGA---CTTAT  126
       ||||| || ||||| |||||||||||   ||||||||| ||    ||||
seq2  TTCATTAATAACTACAATATTGACTTCCTAACTCTGGAAAGAGACTTTAT  149

seq1  G-AAAAAAATCCCAACTAAGC-ATTTAT-GGACAAT-GCTAAGTTATCAC  172
      | ||||||||||||||||||| |||||| ||||||| |||||  ||||||
seq2  GAAAAAAAATCCCAACTAAGCAATTTATGGGACAATGGCTAAAGTATCAC  199

seq1  TTGAAACTCTAACTCCTAGA-TGGGGATGATGCC-TTCTGTTT-AATATT  219
      ||||||||| |||||||||| |||| |||||||| |||||||| ||||||
seq2  TTGAAACTCAAACTCCTAGATTGGGAATGATGCCTTTCTGTTTAAATATT  249

seq1  C-ATATAGCACACACACACACTTGCACACACACACGTG-AAAGTATTATA  267
      | |||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CAATATAGCACACACACACACTTGCACACACACACGTGAAAAGTATTATA  299

seq1  -TTGAAAAGCAAAAACATTTATTTTCTTTAAAAAAGTAAGAGTGTTTTGT  316
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAAAGCAAAAACATTTATTTTCTTTAAAAAAGTAAGAGTGTTTTGT  349

seq1  CTGCTTGGAAGTTGCAGATATATTTCTGTCTCTGGGATTGCACTAGTTAG  366
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTGGAAGTTGCAGATATATTTCTGTCTCTGGGATTGCACTAGTTAG  399

seq1  GACTCTCATCCACATAGTATATAAAACACCTCTT-AACAGTTCTGGACAC  415
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GACTCTCATCCACATAGTATATAAAACACCTCTTAAACAGTTCTGGACAC  449

seq1  AGACTTAATACTTCAATAAAAATAATGAAAATAGAAAGGAATGGTTTTTA  465
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTAATACTTCAATAAAAATAATGAAAATAGAAAGGAATGGTTTTTA  499

seq1  AATCTAAAAGTAGAAAGCAAAGAGGAAACCAAATCAACACACAAAACATA  515
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAAAAGTAGAAAGCAAAGAGGAAACCAAATCAACACACAAAACATA  549

seq1  ACTATGAAGATGCTAAATTTGGAGATATTAAAAAGACCAAGTAACATAAA  565
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGAAGATGCTAAATTTGGAGATATTAAAAAGACCAAGTAACATAAA  599

seq1  TTTTGCTTAATCTTTCTAACTCGTTTTAAACAAAACTTACCTTTCTGTGC  615
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTTAATCTTTCTAACTCGTTTTAAACAAAACTTACCTTTCTGTGC  649

seq1  ACTCTTCAATCCTTTAAGCCTAGTATATTTACCACTAGTGTAAGTGCTCA  665
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTCAATCCTTTAAGCCTAGTATATTTACCACTAGTGTAAGTGCTCA  699

seq1  ATAAATATTTATGAGAAAAGTAGTAAGACAAAGTCTCCATAAAAATGATG  715
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATATTTATGAGAAAAGTAGTAAGACAAAGTCTCCATAAAAATGATG  749

seq1  GAGGAGAC-TTTTTTTTTTTTAAGATCCTGTTCAAAGGCAACTTCTGACT  764
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGACTTTTTTTTTTTTTAAGATCCTGTTCAAAGGCAACTTCTGACT  799

seq1  TCTGGGGACTATTTGTATAAATGGGAGGAATTAGTTCAGAATTTCCAATA  814
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGGACTATTTGTATAAATGGGAGGAATTAGTTCAGAATTTCCAATA  849

seq1  CCTTCCAGGACATGAACCTATGCTGCTTCACAGACAGTAGCTAAAGGCAA  864
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCAGGACATGAACCTATGCTGCTTCACAGACAGTAGCTAAAGGCAA  899

seq1  ATTAAAGCATCCTCTACAAACTCAAGAGTGAACAGATCTGATAAACACTG  914
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGCATCCTCTACAAACTCAAGAGTGAACAGATCTGATAAACACTG  949

seq1  GCTCTGCAAGACTAAGTAGCAAAGTAGAAAATTACATTACAGGCTCGAGA  964
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGCAAGACTAAGTAGCAAAGTAGAAAATTACATTACAGGCTCGAGA  999

seq1  ATTACACCCATGCCATTTCATATTTCTGGATGGGTTTTTTTAGGGGGAGG  1014
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACACCCATGCCATTTCATATTTCTGGATGGGTTTTTTTAGGGGGAGG  1049

seq1  GGGCAGTGCGGGGGGGGGGGTTATTTTAGACAAGGTGAATTC  1056
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGTGCGGGGGGGGGGGTTATTTTAGACAAGGTGAATTC  1091