BAC Information

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BAC

Clone NameB6Ng01-200B11
Chromosome1 (Build37)
Map Location 174,200,369 - 174,324,859
singlet/doubletdoublet
Overlap geneAtp1a2, Igsf8, Kcnj9, Kcnj10, Pigm
Upstream geneB4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna, Cd244, Ly9, Slamf7, Cd48, LOC100041098, Slamf1, Cd84, Slamf6, Vangl2, LOC100040199, Nhlh1, Ncstn, Copa, Pex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p
Downstream geneLOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23, LOC100040320, Crp, LOC665875, Apcs, Olfr16, GA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403, Darc, Cadm3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-200B11.bB6Ng01-200B11.g
ACCGA021247GA021248
length1,157904
definitionB6Ng01-200B11.b B6Ng01-200B11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(174,323,716 - 174,324,859)(174,200,369 - 174,200,991)
sequence
gaattcctttgattagagctacagacattttcctaaggggggaaaaatga
agacacgtgcatgtaaaattatgcatagcaaccaggatactgggattcta
attaataactacattcccagctgtatcagctcatttttggtcatgacaag
aagatactcaaagcgagctaactgtacaaagacaagaggtttctttggct
cagcttggtgaccaccctggctgtgtcaagtcacaccaagaatgtaggta
aaggagagaagtcacacagtaggagccaaagaggagggtcccacagtcct
accaagtggctgccctattcctaagacttcccctattctctatggtccct
accacaccccacagctacagaagcctgaggttccgaccctggtacatggg
tggaggaagcatcggaactacaacagcatctaacagccctactaatccct
ctttttctagcaatacccctgctgataaaacaaaactagtttctacctcc
tggggtttattaccctgataagaaagaacaacagaaactaaagccacatt
tacagactgtctgcaacatttacagtcatgcttagaagtccctaactggc
gctcccattaataaccccaggacaaacacttgtaatttcctagattacag
tttacctcacacaagctgcatcttaaatgctttccttggtagggagacat
cttgggccctagctgagattacaaaacagccaaatcctaccagcaacaga
cttaacaagaatttcttaggtggttatttcctgggaagattatcatagtg
attaatctcatcgacttctcgttgtcactttcagagggtgacatttttgg
ccttgttcccagcttctagagaccttgtcagtctgaaacctgcagcgtct
tatggaccgcctcttccttttaattagaaaaagaggtttgaaacatcggc
gcgctctggattgccttctccaagataaattaagaaaagaaaagggttag
ggagaagaagatggaaagaaaaaaagactctcggttagacttagaaagga
aaaggatcaataaaacttgcattaacagggttcagaaactgtacagcctt
gtgggattttaaattactaatttatgtctctatggaattacactgtcact
cctctcc
gaattcttcctgctgggtggaagcctgaactactttctagcatcgcatcc
aacagaatctcttatatgttggccaagatcctctatcaggcagttgcgtc
tctccatattttttcttagtcatgcatcttgtgtgtatgggcatggtggt
ctcaatgagaatgacccctgtaagctcatgtgtttgcgtgcttggctccc
ggtgatggactgttgtgagggatgaggaggtgtggccttgttggaagagg
ctggggataagctttggtgtttcaaaagcctaagctaggcctgatctctc
tgcaggggtagctctgttacttctccagcaccacgcctgcttctgtgctg
ccaccctccctgccatgaggacaatggactgtccttttgaaactgtaagc
aagtcccaattaaatgcttctatttgaaaaagtttccttggtcacggtgt
ctcttcacagcaatagaacagtgactaagacaacgggtactttgcctgca
tgcatgtctgtgtgccaggtgcatgaagtgctcacagaggggaaaaaatg
tgttgggttacctgggactgaagttacagaaagctgtgggtcaacacatg
gatgctgtgaatcaaattgaaccctgttcctctctggaagagctctcagt
gctcttttttttttttttttaaaagatttatttattttatatgtaagtac
actgtagctgtcctcagacactccagaagagggagtcagatctcattacg
gatggttgtgagccaccatgtggttgctgggattttgaactcctgacctt
cggaagagcagtcgggtgcttctttaccccactgagccatctcacccagc
cccctctcagtgctctaaatcaagtggagttgtctctctagccaactgtt
tatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_174323716_174324859
seq2: B6Ng01-200B11.b_46_1202 (reverse)

seq1  GGAGA-GAGTGACAGTGTAAT--CAT--AGACATAAATTTAATAAATTTT  45
      ||||| |||||||||||||||  |||  ||||||||| ||| |||   ||
seq2  GGAGAGGAGTGACAGTGTAATTCCATAGAGACATAAA-TTAGTAA---TT  46

seq1  AAAAACCCCACAAAGCTGTCCAGTTTCTGA--CCTGT--ATGC-AGTTTT  90
       |||| ||||||| ||||| ||||||||||  |||||  |||| ||||||
seq2  TAAAATCCCACAAGGCTGTACAGTTTCTGAACCCTGTTAATGCAAGTTTT  96

seq1  A-TGATTCTTTTTCTTTCT-AGTCTACC---GAGTC-TTTTTTCTTTCCA  134
      | |||| ||||| |||||| |||||| |   ||||| |||||||||||||
seq2  ATTGATCCTTTTCCTTTCTAAGTCTAACCGAGAGTCTTTTTTTCTTTCCA  146

seq1  TCTTTCTTCTCCCTA--CCCTTTCTTTTC-TAATTTATCTTGGAGAAGGC  181
      || ||||||||||||  || ||||||||| ||||||||||||||||||||
seq2  TC-TTCTTCTCCCTAACCCTTTTCTTTTCTTAATTTATCTTGGAGAAGGC  195

seq1  AATCCAGAGCGCGCCGATGTTTTCAAACCTCTTTTTCTAATTAAAAGGAA  231
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AATCCAGAGCGCGCCGATG-TTTCAAACCTCTTTTTCTAATTAAAAGGAA  244

seq1  GAGGCGGTCCATAAGACGCTGCAGGTTTCAGACTGACAAGGTCTCTAGAA  281
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCGGTCCATAAGACGCTGCAGGTTTCAGACTGACAAGGTCTCTAGAA  294

seq1  GCTGGGAACAAGGCCAAAAATGTCACCCTCTGAAAGTGACAACGAGAAGT  331
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGAACAAGGCCAAAAATGTCACCCTCTGAAAGTGACAACGAGAAGT  344

seq1  CGATGAGATTAATCACTATGATAATCTTCCCAGGAAATAACCACCTAAGA  381
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGAGATTAATCACTATGATAATCTTCCCAGGAAATAACCACCTAAGA  394

seq1  AATTCTTGTTAAGTCTGTTGCTGGTAGGATTTGGCTGTTTTGTAATCTCA  431
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTGTTAAGTCTGTTGCTGGTAGGATTTGGCTGTTTTGTAATCTCA  444

seq1  GCTAGGGCCCAAGATGTCTCCCTACCAAGGAAAGCATTTAAGATGCAGCT  481
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGGCCCAAGATGTCTCCCTACCAAGGAAAGCATTTAAGATGCAGCT  494

seq1  TGTGTGAGGTAAACTGTAATCTAGGAAATTACAAGTGTTTGTCCTGGGGT  531
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGAGGTAAACTGTAATCTAGGAAATTACAAGTGTTTGTCCTGGGGT  544

seq1  TATTAATGGGAGCGCCAGTTAGGGACTTCTAAGCATGACTGTAAATGTTG  581
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATGGGAGCGCCAGTTAGGGACTTCTAAGCATGACTGTAAATGTTG  594

seq1  CAGACAGTCTGTAAATGTGGCTTTAGTTTCTGTTGTTCTTTCTTATCAGG  631
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGTCTGTAAATGTGGCTTTAGTTTCTGTTGTTCTTTCTTATCAGG  644

seq1  GTAATAAACCCCAGGAGGTAGAAACTAGTTTTGTTTTATCAGCAGGGGTA  681
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAAACCCCAGGAGGTAGAAACTAGTTTTGTTTTATCAGCAGGGGTA  694

seq1  TTGCTAGAAAAAGAGGGATTAGTAGGGCTGTTAGATGCTGTTGTAGTTCC  731
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAGAAAAAGAGGGATTAGTAGGGCTGTTAGATGCTGTTGTAGTTCC  744

seq1  GATGCTTCCTCCACCCATGTACCAGGGTCGGAACCTCAGGCTTCTGTAGC  781
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTTCCTCCACCCATGTACCAGGGTCGGAACCTCAGGCTTCTGTAGC  794

seq1  TGTGGGGTGTGGTAGGGACCATAGAGAATAGGGGAAGTCTTAGGAATAGG  831
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGGTGTGGTAGGGACCATAGAGAATAGGGGAAGTCTTAGGAATAGG  844

seq1  GCAGCCACTTGGTAGGACTGTGGGACCCTCCTCTTTGGCTCCTACTGTGT  881
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCACTTGGTAGGACTGTGGGACCCTCCTCTTTGGCTCCTACTGTGT  894

seq1  GACTTCTCTCCTTTACCTACATTCTTGGTGTGACTTGACACAGCCAGGGT  931
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCTCTCCTTTACCTACATTCTTGGTGTGACTTGACACAGCCAGGGT  944

seq1  GGTCACCAAGCTGAGCCAAAGAAACCTCTTGTCTTTGTACAGTTAGCTCG  981
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACCAAGCTGAGCCAAAGAAACCTCTTGTCTTTGTACAGTTAGCTCG  994

seq1  CTTTGAGTATCTTCTTGTCATGACCAAAAATGAGCTGATACAGCTGGGAA  1031
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAGTATCTTCTTGTCATGACCAAAAATGAGCTGATACAGCTGGGAA  1044

seq1  TGTAGTTATTAATTAGAATCCCAGTATCCTGGTTGCTATGCATAATTTTA  1081
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTTATTAATTAGAATCCCAGTATCCTGGTTGCTATGCATAATTTTA  1094

seq1  CATGCACGTGTCTTCATTTTTCCCCCCTTAGGAAAATGTCTGTAGCTCTA  1131
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCACGTGTCTTCATTTTTCCCCCCTTAGGAAAATGTCTGTAGCTCTA  1144

seq1  ATCAAAGGAATTC  1144
      |||||||||||||
seq2  ATCAAAGGAATTC  1157

seq1: chr1_174200369_174200991
seq2: B6Ng01-200B11.g_69_691

seq1  GAATTCTTCCTGCTGGGTGGAAGCCTGAACTACTTTCTAGCATCGCATCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCTGCTGGGTGGAAGCCTGAACTACTTTCTAGCATCGCATCC  50

seq1  AACAGAATCTCTTATATGTTGGCCAAGATCCTCTATCAGGCAGTTGCGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAATCTCTTATATGTTGGCCAAGATCCTCTATCAGGCAGTTGCGTC  100

seq1  TCTCCATATTTTTTCTTAGTCATGCATCTTGTGTGTATGGGCATGGTGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCATATTTTTTCTTAGTCATGCATCTTGTGTGTATGGGCATGGTGGT  150

seq1  CTCAATGAGAATGACCCCTGTAAGCTCATGTGTTTGCGTGCTTGGCTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATGAGAATGACCCCTGTAAGCTCATGTGTTTGCGTGCTTGGCTCCC  200

seq1  GGTGATGGACTGTTGTGAGGGATGAGGAGGTGTGGCCTTGTTGGAAGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATGGACTGTTGTGAGGGATGAGGAGGTGTGGCCTTGTTGGAAGAGG  250

seq1  CTGGGGATAAGCTTTGGTGTTTCAAAAGCCTAAGCTAGGCCTGATCTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGATAAGCTTTGGTGTTTCAAAAGCCTAAGCTAGGCCTGATCTCTC  300

seq1  TGCAGGGGTAGCTCTGTTACTTCTCCAGCACCACGCCTGCTTCTGTGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGGGTAGCTCTGTTACTTCTCCAGCACCACGCCTGCTTCTGTGCTG  350

seq1  CCACCCTCCCTGCCATGAGGACAATGGACTGTCCTTTTGAAACTGTAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCTCCCTGCCATGAGGACAATGGACTGTCCTTTTGAAACTGTAAGC  400

seq1  AAGTCCCAATTAAATGCTTCTATTTGAAAAAGTTTCCTTGGTCACGGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCCAATTAAATGCTTCTATTTGAAAAAGTTTCCTTGGTCACGGTGT  450

seq1  CTCTTCACAGCAATAGAACAGTGACTAAGACAACGGGTACTTTGCCTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCACAGCAATAGAACAGTGACTAAGACAACGGGTACTTTGCCTGCA  500

seq1  TGCATGTCTGTGTGCCAGGTGCATGAAGTGCTCACAGAGGGGAAAAAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGTCTGTGTGCCAGGTGCATGAAGTGCTCACAGAGGGGAAAAAATG  550

seq1  TGTTGGGTTACCTGGGACTGAAGTTACAGAAAGCTGTGGGTCAACACATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGGTTACCTGGGACTGAAGTTACAGAAAGCTGTGGGTCAACACATG  600

seq1  GATGCTGTGAATCAAATTGAACC  623
      |||||||||||||||||||||||
seq2  GATGCTGTGAATCAAATTGAACC  623