BAC Information

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BAC

Clone NameB6Ng01-200C10
Chromosome1 (Build37)
Map Location 31,284,748 - 31,285,907
singlet/doubletsinglet
Overlap genenone
Upstream geneEG624138, LOC100040699, Phf3, EG638995, Ptp4a1, EG435615, LOC669402, EG435616, 4931428L18Rik, LOC666020, Gluld1, 4930521A18Rik
Downstream geneEG226957, EG624262, LOC624275, LOC666056, LOC100041238, Khdrbs2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-200C10.bB6Ng01-200C10.g
ACCGA021292GA021293
length1,1111,203
definitionB6Ng01-200C10.b B6Ng01-200C10.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatctttccaaaacttttatcatgaatgggtgttgcatctcc
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttctattttgtgaaatagtttgtgcagaactgg
aattagatcttctttgaaggtctgatagaactctgcactaaacctgtctg
gtcctgggctttttttggttgggtgactattaataactgcttctatttct
ttaggggatatgggactgtttagatggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcttccaggttttcct
gttttgttgagcatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
taggattttgtccctgtgccctttagtgagtctagctaagggtttatcta
tcctgttgattttctcaaagaaccaactcctcgttttggttaattctttg
aatagttcttctctgtttccaattggttgatttcacacctgagtttgatt
atttccttgccgtctactcctcttgggtgaatttgcttcctttttcttct
agggcttttaagatgtgttgtcaagctgctagtatgtgctctcctcccgt
ttcttcttggaggcactcagagctatgagttttccctctagaaattgctt
tcattgtgtcccatagtttggtatggttgtggctcatttcataaactcta
aaaggcttcatttcttcttttatcccttcttgaccatggttatcaatgga
gacgatgtggt
gaattcccttacttctaaccagagaaacaattcaagttgttattttctta
ttataaaagtgacctgggggcatagttccaacaactgcgcattacaactt
aactaaacggcattcttcactgaataaattactgacatacacacacattt
agtcttaacattttctttcaaggactcagaagggggaagtctggtgaatg
ggtgttgagtcacagataaagccggggagtggtgctgctctttcaccaag
gacggaagctaggtagcaattgtagcatctgtgtcaatgtgctataagaa
tggactttgaaagttttaccaacaaagagatgattaaggtctcatgagat
agaaatgctcactgtgatttaacataaccaagtgcatatgtgtgtcaaaa
taccacagtaacacataaatatatggaattgttaactgttgattcaaata
tgaaatgaaaatgacaaagtttcctacaggcctgttttaaatgctcccga
gagaaaggcttgactgtcactacctttcaagccctttcacgcattttaac
caattaccttgggtccatcaaaaaatgctatctgaaatttatctcgtgac
atttaaaaatattgctgagttatttacttcagtgaaagggagtttgtgtt
tcacttagttgtccatgtggttaaaatgagtttttattggtgatcggcac
ttgtgcaaagtggagcagtctcactgcagcatttacacacacacacacac
acacacacacacacacacacacacacacacacatatgcatgtatacacac
acacacaatatgtatgtatatatacatatacaccatacacacacacattc
acatacacataataaaatgggctctgactatacttgtccccttctaccca
ccttcaatgactcctctccctcttccaacttccccacctctttctgtatc
ccctcataccttcaggtttagtttccctgttctttttccttcccctaagc
tttccctcagtggaagagaaaaaatggtggccgtttgtcccttttttaac
tcctcatttgtttcacctttcctgaatcaatctggaactcccacttctaa
tccttgaaaatggtcataaattccattttcctgggtgcctgaagtagaaa
ccttccacttgtgtgtgccccatccacatttctccaacacttttcatcgt
gta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_31284748_31285907
seq2: B6Ng01-200C10.g_67_1269

seq1  GAATTCCCTTACTTCTAACCAGAGAAACAATTCAAGTTGTTATTTTCTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTTACTTCTAACCAGAGAAACAATTCAAGTTGTTATTTTCTTA  50

seq1  TTATAAAAGTGACCTGGGGGCATAGTTCCAACAACTGCGCATTACAACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAAAGTGACCTGGGGGCATAGTTCCAACAACTGCGCATTACAACTT  100

seq1  AACTAAACGGCATTCTTCACTGAATAAATTACTGACATACACACACATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAACGGCATTCTTCACTGAATAAATTACTGACATACACACACATTT  150

seq1  AGTCTTAACATTTTCTTTCAAGGACTCAGAAGGGGGAAGTCTGGTGAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTAACATTTTCTTTCAAGGACTCAGAAGGGGGAAGTCTGGTGAATG  200

seq1  GGTGTTGAGTCACAGATAAAGCCGGGGAGTGGTGCTGCTCTTTCACCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTGAGTCACAGATAAAGCCGGGGAGTGGTGCTGCTCTTTCACCAAG  250

seq1  GACGGAAGCTAGGTAGCAATTGTAGCATCTGTGTCAATGTGCTATAAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGGAAGCTAGGTAGCAATTGTAGCATCTGTGTCAATGTGCTATAAGAA  300

seq1  TGGACTTTGAAAGTTTTACCAACAAAGAGATGATTAAGGTCTCATGAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTTTGAAAGTTTTACCAACAAAGAGATGATTAAGGTCTCATGAGAT  350

seq1  AGAAATGCTCACTGTGATTTAACATAACCAAGTGCATATGTGTGTCAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGCTCACTGTGATTTAACATAACCAAGTGCATATGTGTGTCAAAA  400

seq1  TACCACAGTAACACATAAATATATGGAATTGTTAACTGTTGATTCAAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACAGTAACACATAAATATATGGAATTGTTAACTGTTGATTCAAATA  450

seq1  TGAAATGAAAATGACAAAGTTTCCTACAGGCCTGTTTTAAATGCTCCCGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGAAAATGACAAAGTTTCCTACAGGCCTGTTTTAAATGCTCCCGA  500

seq1  GAGAAAGGCTTGACTGTCACTACCTTTCAAGCCCTTTCACGCATTTTAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGGCTTGACTGTCACTACCTTTCAAGCCCTTTCACGCATTTTAAC  550

seq1  CAATTACCTTGGGTCCATCAAAAAATGCTATCTGAAATTTATCTCGTGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTACCTTGGGTCCATCAAAAAATGCTATCTGAAATTTATCTCGTGAC  600

seq1  ATTTAAAAATATTGCTGAGTTATTTACTTCAGTGAAAGGGAGTTTGTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAAATATTGCTGAGTTATTTACTTCAGTGAAAGGGAGTTTGTGTT  650

seq1  TCACTTAGTTGTCCATGTGGTTAAAATGAGTTTTTATTGGTGATCGGCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTAGTTGTCCATGTGGTTAAAATGAGTTTTTATTGGTGATCGGCAC  700

seq1  TTGTGCAAAGTGGAGCAGTCTCACTGCAGCATTTACACACACACACACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCAAAGTGGAGCAGTCTCACTGCAGCATTTACACACACACACACAC  750

seq1  ACACACACACACACACACACACACACACACACATATGCATGTATACACAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACATATGCATGTATACACAC  800

seq1  ACACAC-ATATGTATGTATATATACATATACA-CATACACACACACATTC  848
      |||||| ||||||||||||||||||||||||| |||||||||||||||||
seq2  ACACACAATATGTATGTATATATACATATACACCATACACACACACATTC  850

seq1  ACATACACAT-ATAAAATGGGCTCTGACTATACTTGT-CCCTTCTA-CCA  895
      |||||||||| |||||||||||||||||||||||||| |||||||| |||
seq2  ACATACACATAATAAAATGGGCTCTGACTATACTTGTCCCCTTCTACCCA  900

seq1  CCTTCAATGACTCCTCT-CCTCTTCC-ACTTCCCCACCTC-TTCTGTAT-  941
      ||||||||||||||||| |||||||| ||||||||||||| |||||||| 
seq2  CCTTCAATGACTCCTCTCCCTCTTCCAACTTCCCCACCTCTTTCTGTATC  950

seq1  CCCTCATA-CTTCAGGTTTAGTTT-CCTGT--CTTTTCCTTCCCCT-AGC  986
      |||||||| ||||||||||||||| |||||   ||||||||||||| |||
seq2  CCCTCATACCTTCAGGTTTAGTTTCCCTGTTCTTTTTCCTTCCCCTAAGC  1000

seq1  TT--CCTCAGTG--AGAGAAAAA--TGTGG-CGTTTGTCC---TTTTTAC  1026
      ||  ||||||||  |||||||||   |||| |||||||||   |||| ||
seq2  TTTCCCTCAGTGGAAGAGAAAAAATGGTGGCCGTTTGTCCCTTTTTTAAC  1050

seq1  T-CTCATTTGTTTCACCTTTCCTG-ATC-ATCTGG-ACTCCCAC-TCT-A  1070
      | |||||||||||||||||||||| ||| |||||| |||||||| ||| |
seq2  TCCTCATTTGTTTCACCTTTCCTGAATCAATCTGGAACTCCCACTTCTAA  1100

seq1  TCCTGGAAA--TGTCAT-AATTTCATTTTCCTGGGTGGCTG-AGTAGAA-  1115
      |||| ||||   ||||| |||| |||||||||||||| ||| ||||||| 
seq2  TCCTTGAAAATGGTCATAAATTCCATTTTCCTGGGTGCCTGAAGTAGAAA  1150

seq1  --CTCCAC-TGTGTGTGCCC--ACCACATTT-TTCAACAC-TTTCATC-T  1157
         ||||| |||||||||||   |||||||| | |||||| ||||||| |
seq2  CCTTCCACTTGTGTGTGCCCCATCCACATTTCTCCAACACTTTTCATCGT  1200

seq1  GTA  1160
      |||
seq2  GTA  1203