BAC Information

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BAC

Clone NameB6Ng01-200D24
Chromosome1 (Build37)
Map Location 142,996,031 - 142,997,217
singlet/doubletsinglet
Overlap genenone
Upstream geneCfh, Kcnt2
Downstream geneEG226472
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-200D24.bB6Ng01-200D24.g
ACCGA021366GA021367
length1,199940
definitionB6Ng01-200D24.b B6Ng01-200D24.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccttttgaaataatttagaaaaaaaacaggcatctaaaaaaagtt
actttttacataaagtataaaaatataatttcttattagataaacattag
agtttaccagcataaaaatattacttgataattaatcagaagtctttagg
aataatggactggaagaaaccagatcagggaagttgtaggtccaagaaga
aaatgaataatgaattgatttattaatagatgaaactagtaacaactgtc
tctacaaaaaatatagtctagtgtactgggaaggttacacatttaaagag
ggaccatattttacatttttatgttcatatataatactgcagtgaaagtg
gatatagaaaagtcttggcaatatctcaaaaatgataaaaatgtgtaaaa
ttcaatccagtacaaaagagagtaaaataaaatttaaatatacgttaatc
tgcaacacaacaagattcataaaatataaaatagctattgaccttcaaaa
acgatggggaattttagttcaaaaatatgtatacagctgtttccaaggga
atactgatcaaaacaaagacaacttgtcttcaaaataaaatggcaatagg
aaagaacattatatagtctttctttaacccattggaacagtttctttttt
cattaatttttttatttaattacattccaaatattatctatattccgggt
ctctcctcaaagacctcttcaccccatgctttctccccgttggctctgag
agagtgcccctccaccaagcaaccacccgacacattcatccatactcctt
caccttaccatgctcagcatccacattccctaggatatcacagattagaa
cagttttaaatacagtatctgacactatatccaagttagtctagagctca
ctgtgtaccccaagttggtcttgtgttctcaatgtcatcctgattcagcc
cccgagtgctgattacctaggtgaggcgcctttttattgggttgaaggtt
gaagaaaaataaattccgttgggactggcaaatttcattaacaggcctta
attgcagaaggcctcaagtaatcaccataaaaataattaggtagctacag
aagagacttatatatctgaatgatagtataatctgtcccttgacttacta
gtctaattcagtatattctaactaggtagtccaccctatctatatatag

gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgctaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgtgggtg
ggattgcaggcttgaacaactactctggaaatcagtctggcggttcctca
gaaaattggccatagtactactggaggatgcagcaatacctctcctggga
atatatccagaagatgccccaactggtaagaaggaaacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaaaagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaat
ggaactctcacaatatgtactcactgataagtggatattagcccaaaacc
taggatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaaagactgaagtgtggacactatgcccctcccttagaagtggg
aacaaaacacccttggaaaggagttacagagacaaagtttggagctgaga
tgaaaggatggaccatgtagagactgccatatccagggatccaccccata
atcagcatccaaacgctgacaccattgcatacactagcaagatttttatt
cgaaagggaccccagatataggctgtctctttgtgagactatggcttggg
ggcctagcaaaacacagaaagtggaatgcttcaccagtca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_142996031_142997217
seq2: B6Ng01-200D24.b_46_1244

seq1  GAATTCCTTTTGAAATAATTTAGAAAAAAAACAGGCATCTAAAAAAAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTTGAAATAATTTAGAAAAAAAACAGGCATCTAAAAAAAGTT  50

seq1  ACTTTTTACATAAAGTATAAAAATATAATTTCTTATTAGATAAACATTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTACATAAAGTATAAAAATATAATTTCTTATTAGATAAACATTAG  100

seq1  AGTTTACCAGCATAAAAATATTACTTGATAATTAATCAGAAGTCTTTAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTACCAGCATAAAAATATTACTTGATAATTAATCAGAAGTCTTTAGG  150

seq1  AATAATGGACTGGAAGAAACCAGATCAGGGAAGTTGTAGGTCCAAGAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGGACTGGAAGAAACCAGATCAGGGAAGTTGTAGGTCCAAGAAGA  200

seq1  AAATGAATAATGAATTGATTTATTAATAGATGAAACTAGTAACAACTGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAATAATGAATTGATTTATTAATAGATGAAACTAGTAACAACTGTC  250

seq1  TCTACAAAAAATATAGTCTAGTGTACTGGGAAGGTTACACATTTAAAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAAAAAATATAGTCTAGTGTACTGGGAAGGTTACACATTTAAAGAG  300

seq1  GGACCATATTTTACATTTTTATGTTCATATATAATACTGCAGTGAAAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCATATTTTACATTTTTATGTTCATATATAATACTGCAGTGAAAGTG  350

seq1  GATATAGAAAAGTCTTGGCAATATCTCAAAAATGATAAAAATGTGTAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATAGAAAAGTCTTGGCAATATCTCAAAAATGATAAAAATGTGTAAAA  400

seq1  TTCAATCCAGTACAAAAGAGAGTAAAATAAAATTTAAATATACGTTAATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATCCAGTACAAAAGAGAGTAAAATAAAATTTAAATATACGTTAATC  450

seq1  TGCAACACAACAAGATTCATAAAATATAAAATAGCTATTGACCTTCAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACACAACAAGATTCATAAAATATAAAATAGCTATTGACCTTCAAAA  500

seq1  ACGATGGGGAATTTTAGTTCAAAAATATGTATACAGCTGTTTCCAAGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATGGGGAATTTTAGTTCAAAAATATGTATACAGCTGTTTCCAAGGGA  550

seq1  ATACTGATCAAAACAAAGACAACTTGTCTTCAAAATAAAATGGCAATAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGATCAAAACAAAGACAACTTGTCTTCAAAATAAAATGGCAATAGG  600

seq1  AAAGAACATTATATAGTCTTTCTTTAACCCATTGGAACAGTTTCTTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACATTATATAGTCTTTCTTTAACCCATTGGAACAGTTTCTTTTTT  650

seq1  CATTAATTTTTTTATTTAATTACATTCCAAATATTATCTATATTCCGGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAATTTTTTTATTTAATTACATTCCAAATATTATCTATATTCCGGGT  700

seq1  CTCTCCTCAAAGACCTCTTCACCCCATGCTTTCTCCCCGTTGGCTCTGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTCAAAGACCTCTTCACCCCATGCTTTCTCCCCGTTGGCTCTGAG  750

seq1  AGAGTGCCCCTCCACCAAGCAACCACCCGACACATTCATCCATACTCCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGCCCCTCCACCAAGCAACCACCCGACACATTCATCCATACTCCTT  800

seq1  CACCTTACCATGCTCAGCATCCACATTCCCTAGGATATCACAGATTAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTACCATGCTCAGCATCCACATTCCCTAGGATATCACAGATTAGAA  850

seq1  CAGTTTTAAATACAGTATCTGACACTATATCCAAGTTAGTCTAGAGCTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTAAATACAGTATCTGACACTATATCCAAGTTAGTCTAGAGCTCA  900

seq1  CTGTGTACCCCAAGTTGGTCTTGTGTTCTCAATGTCATCCTGATTCAGCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTACCCCAAGTTGGTCTTGTGTTCTCAATGTCATCCTGATTCAGCC  950

seq1  CCCGAGTGCTGATTACCTAGGTGAGGCGCC-TTTTATTGGGTTG-AGGTT  998
      |||||||||||||||||||||||||||||| ||||||||||||| |||||
seq2  CCCGAGTGCTGATTACCTAGGTGAGGCGCCTTTTTATTGGGTTGAAGGTT  1000

seq1  G-AGAAAAATAA--TTCGTTTGGACTGGC-AATTTCATTAACAAGGCTTA  1044
      | ||||||||||  | |||| |||||||| ||||||||||||| | ||||
seq2  GAAGAAAAATAAATTCCGTTGGGACTGGCAAATTTCATTAACAGGCCTTA  1050

seq1  A-TGCAGAA-GCCTCAAAGTAATCA-CAT-AAAATAATAAGGTAGCTACA  1090
      | ||||||| ||||| ||||||||| ||| |||||||| |||||||||||
seq2  ATTGCAGAAGGCCTC-AAGTAATCACCATAAAAATAATTAGGTAGCTACA  1099

seq1  GAAAGAGACTTATAATATCTG-ATGATAGTATAATCCTGTCCTTTGATCT  1139
      | ||||||||||| ||||||| ||||||||||||| |||||| ||||  |
seq2  G-AAGAGACTTAT-ATATCTGAATGATAGTATAAT-CTGTCCCTTGACTT  1146

seq1  ACTAGTTCTAAATCTCAGTATA-TCT-ACTAGGTAATC------ACCTAT  1181
      ||||| |||||   |||||||| ||| |||||||| ||      | ||||
seq2  ACTAG-TCTAA--TTCAGTATATTCTAACTAGGTAGTCCACCCTATCTAT  1193

seq1  ATATAG  1187
      ||||||
seq2  ATATAG  1199


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