BAC Information

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BAC

Clone NameB6Ng01-200H16
Chromosome1 (Build37)
Map Location 12,033,477 - 12,034,683
singlet/doubletsinglet
Overlap genenone
Upstream geneC030045D06Rik, A830018L16Rik
Downstream geneLOC665262, LOC100039709, LOC621353, LOC100039733, Sulf1, Slco5a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-200H16.bB6Ng01-200H16.g
ACCGA021526GA021527
length1,2301,081
definitionB6Ng01-200H16.b B6Ng01-200H16.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaacaagctctgcataatatttaattgtggatctctccatctgct
tccaccaattatgctaggtttctctctgcaactattggagaatatcagta
atagtttaagtggtgaactctatcacaaatccctttctaatgattagtgt
ttaagttaaggttctctagaagaatataacaaatagaataaacattatat
aaatacatatatgtatgtgtgtacaaacatacatatatatacaaatatag
ttttttaagttccttatgttaaaacaaggttatctcacttctgagagtct
gagaatcctagttacaaaggtaggatgactatgaaccacaagaatgacca
gcatagcccagtaacctttagagttcagtagcagcatataaaacttaatg
gtaacaaacttctctttaattagatctgagaccaacagatcaacaagaag
actctgtgtagctagctacccaagcctaaggaagtgttagatatgaacct
tcaactgccagagcactgaaccaccaaaatgcctaaccatttttaagtat
tggcactttatacccagagataagtatgctctcacccttcaccaagaaaa
tatcaacatcgtaaatgttacgataaccataaccaaaagtcacagccaaa
caaaatgaagacttgttgagatataaaatttaagtactcaaatattcata
ttatatagaagttatcataataccaaaattttattaacttcacatcattt
tgctcccttaagcaaggaaatgtacataaacttcatttaagatcatgaaa
atccatgcatcatacccatcttttatttttcagattttatattaaataat
agcaaaaaaaagcagtgttaggtaaatccatagtccagtttttctttttt
ctttttaattttttttattagatatgtttttcatctacatttcacatgct
atcccctttcctagatgggcacaggggaaaaattcctgaataagaatagc
aatggccttgtgctgtaagatggagaattgacaaatgggacctcatgaaa
ctgccaaaggcttctgcagcaaaagaacaccctttcagttaattaaaaat
gggggcttcagagcttaacggaagaatttctccacctgaggaattaccaa
attgggcttggagaaagcacttggaaaatgcctcagcatcctagtccatc
agaagaaatggccaaaatcacaaaccaccc

gaattctctgtttatttctgttccccattttttaatagtgttatttgatt
ctctggagtctaacttcttgaattctttgtatatattgaatattagccct
ctatcagtaaggttggtaaagatcttttcccaatctgttgattgctgttt
tgtcctattgatggacagtatcctttgcattacagaagctgtgcaatttt
atgaggtcccattgtcaattcttgatcttggaaaagaagctattggtgtt
ctgttcaggaacttttcccctgtgcccatgtgttccagactattccctac
tttcttttttattagtttcaatgcatctggttttatgtggaggtccttga
tccacttggacttgagctttgtacaaggagataagaatggatcaatttgc
attcttctgcatgttgactaccagttcaaccagcaccatttgttgaaaat
gctgactttttcaaaaattctggtgacagcagatgctggcaaggatgtgg
agaaagaggaacacccctccattgctggtgggattgaaagctggtacaac
aactctggagatcagtctggtggtgccttagaaaactggacaatttacta
taagtagatccagcaatacctctcctgggcatatacccagaagatgttcc
aaactggcaataaggacacatgtttcactatgttcatagcagccttattt
tataatagttcagaagctagaaagaacccagatgtccctcaacagaggaa
tggatacagaaaaatttggttaccttttacacaatggagtactactcacc
tatttaaaacttggcaaaaggatgtatttggaggatattatcctgagtgt
ggtaacccaatcacaaaggaagtcaccttgatatggcactcactgataat
gtggatattagtcccagaacactagaatacccaggatacacttccaaata
ctaaagaaaatcaaagaagaaggactcacatgtgtaacttcattcctccc
taagatagggaataaattatccttgggaagggagttgctagaaatcaaaa
gttttggaagctaagattctagggatgtacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_12033477_12034683
seq2: B6Ng01-200H16.b_46_1275

seq1  GAATTCAACAAGCTCTGCATAATATTTAATTGTGGATCTCTCCATCTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACAAGCTCTGCATAATATTTAATTGTGGATCTCTCCATCTGCT  50

seq1  TCCACCAATTATGCTAGGTTTCTCTCTGCAACTATTGGAGAATATCAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCAATTATGCTAGGTTTCTCTCTGCAACTATTGGAGAATATCAGTA  100

seq1  ATAGTTTAAGTGGTGAACTCTATCACAAATCCCTTTCTAATGATTAGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTTAAGTGGTGAACTCTATCACAAATCCCTTTCTAATGATTAGTGT  150

seq1  TTAAGTTAAGGTTCTCTAGAAGAATATAACAAATAGAATAAACATTATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTTAAGGTTCTCTAGAAGAATATAACAAATAGAATAAACATTATAT  200

seq1  AAATACATATATGTATGTGTGTACAAACATACATATATATACAAATATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACATATATGTATGTGTGTACAAACATACATATATATACAAATATAG  250

seq1  TTTTTTAAGTTCCTTATGTTAAAACAAGGTTATCTCACTTCTGAGAGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAGTTCCTTATGTTAAAACAAGGTTATCTCACTTCTGAGAGTCT  300

seq1  GAGAATCCTAGTTACAAAGGTAGGATGACTATGAACCACAAGAATGACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATCCTAGTTACAAAGGTAGGATGACTATGAACCACAAGAATGACCA  350

seq1  GCATAGCCCAGTAACCTTTAGAGTTCAGTAGCAGCATATAAAACTTAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGCCCAGTAACCTTTAGAGTTCAGTAGCAGCATATAAAACTTAATG  400

seq1  GTAACAAACTTCTCTTTAATTAGATCTGAGACCAACAGATCAACAAGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACAAACTTCTCTTTAATTAGATCTGAGACCAACAGATCAACAAGAAG  450

seq1  ACTCTGTGTAGCTAGCTACCCAAGCCTAAGGAAGTGTTAGATATGAACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTGTAGCTAGCTACCCAAGCCTAAGGAAGTGTTAGATATGAACCT  500

seq1  TCAACTGCCAGAGCACTGAACCACCAAAATGCCTAACCATTTTTAAGTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTGCCAGAGCACTGAACCACCAAAATGCCTAACCATTTTTAAGTAT  550

seq1  TGGCACTTTATACCCAGAGATAAGTATGCTCTCACCCTTCACCAAGAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACTTTATACCCAGAGATAAGTATGCTCTCACCCTTCACCAAGAAAA  600

seq1  TATCAACATCGTAAATGTTACGATAACCATAACCAAAAGTCACAGCCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAACATCGTAAATGTTACGATAACCATAACCAAAAGTCACAGCCAAA  650

seq1  CAAAATGAAGACTTGTTGAGATATAAAATTTAAGTACTCAAATATTCATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGAAGACTTGTTGAGATATAAAATTTAAGTACTCAAATATTCATA  700

seq1  TTATATAGAAGTTATCATAATACCAAAATTTTATTAACTTCACATCATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATAGAAGTTATCATAATACCAAAATTTTATTAACTTCACATCATTT  750

seq1  TGCTCCCTTAAGCAAGGAAATGTACATAAACTTCATTTAAGATCATGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCCTTAAGCAAGGAAATGTACATAAACTTCATTTAAGATCATGAAA  800

seq1  ATCCATGCATCATACCCATCTTTTATTTTTCAGATTTTATATTAAATAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATGCATCATACCCATCTTTTATTTTTCAGATTTTATATTAAATAAT  850

seq1  AGCAAAAAAAAGCAGTGTTAGGTAAATCCATAGTCCAGTTTTTCTTTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAAAAAAGCAGTGTTAGGTAAATCCATAGTCCAGTTTTTCTTTTTT  900

seq1  CTTTTTAA-TTTTTTTATTAGATATGTTTTTCATCTACATTTCACATGCT  949
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTAATTTTTTTTATTAGATATGTTTTTCATCTACATTTCACATGCT  950

seq1  ATCCCCTTTCCTAGATGGGCACAGGGGAAAAATTCCTGAAT-AGAATAGC  998
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ATCCCCTTTCCTAGATGGGCACAGGGGAAAAATTCCTGAATAAGAATAGC  1000

seq1  AATGG-CTTGTGCTGTAAGATGGAGAATTGACAAATGGGACCTCATGAAA  1047
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCCTTGTGCTGTAAGATGGAGAATTGACAAATGGGACCTCATGAAA  1050

seq1  CTGC--AAAGCTTCTGCAAGGCAAAAG-ACACC--TTCAG-TAAATAAAA  1091
      ||||  || |||||||||  ||||||| |||||  ||||| ||| |||||
seq2  CTGCCAAAGGCTTCTGCA--GCAAAAGAACACCCTTTCAGTTAATTAAAA  1098

seq1  ATGGGG--CTCAGAGCTAAAC-GAAGAA-TTCT-CACCTGAGGAA-TACC  1135
      ||||||   |||||||| ||| |||||| |||| ||||||||||| ||||
seq2  ATGGGGGCTTCAGAGCTTAACGGAAGAATTTCTCCACCTGAGGAATTACC  1148

seq1  AAAT--GGCT--GAG-AAGCACCTGAAAAAATGCTCAGCATCCTTAATCA  1180
      ||||  ||||  ||| |||||| || ||||   |||||||||||    ||
seq2  AAATTGGGCTTGGAGAAAGCACTTGGAAAATGCCTCAGCATCCTAGTCCA  1198

seq1  TCAG-AGAAATG---CAAATCA-AAACAACCC  1207
      |||| |||||||    |||||| |||| ||||
seq2  TCAGAAGAAATGGCCAAAATCACAAACCACCC  1230


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