BAC Information

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BAC

Clone NameB6Ng01-200K10
Chromosome1 (Build37)
Map Location 125,638,596 - 125,727,569
singlet/doubletdoublet
Overlap geneDpp10
Upstream geneLOC666983
Downstream geneLOC666998
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-200K10.bB6Ng01-200K10.g
ACCGA021652GA021653
length1,1431,073
definitionB6Ng01-200K10.b B6Ng01-200K10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(125,638,596 - 125,639,736)(125,726,504 - 125,727,569)
sequence
gaattctcataggcatgacaattttcaagtgatctgcaattttatataaa
taatacttaagctagaatacaaaaacaaaaggaaaaaagctaattgtact
gtcagttgggctctgttatcaacaaactataacttcaagacaaaatcact
attagctggggttagacacactaaaaggatgggaccatcacatgtgattt
gaatgtgaaatgtctcctgacactcacatctttggaaacttgatccccag
caggagccattgtatgggaaggccataaaactttagaagaattagatcac
tggggttggcctgaggttttgtaattcaccacctcctgaaagtttataca
gtgtgactatctggtctcccatccctgctaccatgccgttcttgctataa
aaaactgtatctccttggacttatgagtccaaaccaaaccatttccctta
agttacctttgttggatattttataacagcaaatggaaaagtagttaaga
caacaccaacatcaaccctccagaaatgcaatgaatgtacatttcccttg
taaattcatagatatttactttcttgtagagttccctcttcattgaaaac
cttattccattttaagctgctgaaaaacgtgagtatgtactgtgtattgc
ctgtttttgttactgttgtgtatataatgctacattttccttcatcaatt
aaaataaatgcattaaaaagtaactagtttgcaaaacaattatttcattt
ccttagaatttcatgctaagaatgagatactatccaaaagacataattct
catgatgctaggtagccaatcaccttttctaattttcagcaattttcaaa
tgagctatttccttaattaagtaacttcttccaaatggaatagtattcat
gtaatttttaataaccctgcaagcaatgtatttatgtatagaagttggaa
ggcaagtggcagactttttcagagtcaataattttacatgtaaaatttgg
gcagagtgaagtgttgttgaagttaatatactagtaaatttgggttttta
tattacaaagagctgtcttcataataagttattaagaaccgaatatgtac
ttgacaagttaactttggtagtaatccaatgtcttctatcatt

gaattctattgttcttcatcttcaagttgagagactgagtattaggaagg
ttttgtatgatcattgtttatacaatgtttcgaacatgagctcatagtca
aaacacaaatggtattcccagccatggtgtagtactccacagagttgtga
caagttagttttcaaatcttccttatgacatgaacaggggagtttcagaa
atggatgagaatgtgaatcatggtcagggattattagaaagagacatata
tacattactaaatgagaaaaaattcagtggatatataaagaaatgggaag
aatatttgcaactgagtatagtcagtagaccaatgctggaggaagcaaaa
tgggtaggtaggtgagattattctggtggatctagaagttcttattttgc
cagtggtatttgatataagaatgttcacatgactattaaaactgaaagcc
tggcatcagaggatgtgttaagaagtggatggatggcgaaagagtagtac
acaggtcttctagcatcctaataatggatgtacaggagacaggagcctct
aagagaaatagtatttctttttgtttttctttagaccaaactctttcaga
agctccctgctttcacactagtgttttaggagtagatctgagtctggtga
gcaggtatggagtttgcagattcttgtgcatcttcacaattaattgtact
aagacttggaaagatacaggagaggaaatagactatgaagagggaaaaac
agagaagcctgaaggtgtgctctgctcctatctgggctgaggcctggctc
caagagaactgcaaggagattggaacaggctctacagtaacctgttatag
gttttttatcattgtacccatctcctttgagtacctgcgagacaggcttg
aagagcatgcttctgttgactgactgtatcttcaagtagactgagagctg
ctatagtcactctgcagaagaacatcctgcatacatgcaacccagacctc
cccccccccccaacttaaaggtttcagtttctctagatctgataagggga
aaataataacaggatttatatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_125638596_125639736
seq2: B6Ng01-200K10.b_49_1191

seq1  GAATTCTCATAGGCATGACAATTTTCAAGTGATCTGCAATTTTATATAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATAGGCATGACAATTTTCAAGTGATCTGCAATTTTATATAAA  50

seq1  TAATACTTAAGCTAGAATACAAAAACAAAAGGAAAAAAGCTAATTGTACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACTTAAGCTAGAATACAAAAACAAAAGGAAAAAAGCTAATTGTACT  100

seq1  GTCAGTTGGGCTCTGTTATCAACAAACTATAACTTCAAGACAAAATCACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTTGGGCTCTGTTATCAACAAACTATAACTTCAAGACAAAATCACT  150

seq1  ATTAGCTGGGGTTAGACACACTAAAAGGATGGGACCATCACATGTGATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCTGGGGTTAGACACACTAAAAGGATGGGACCATCACATGTGATTT  200

seq1  GAATGTGAAATGTCTCCTGACACTCACATCTTTGGAAACTTGATCCCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTGAAATGTCTCCTGACACTCACATCTTTGGAAACTTGATCCCCAG  250

seq1  CAGGAGCCATTGTATGGGAAGGCCATAAAACTTTAGAAGAATTAGATCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGCCATTGTATGGGAAGGCCATAAAACTTTAGAAGAATTAGATCAC  300

seq1  TGGGGTTGGCCTGAGGTTTTGTAATTCACCACCTCCTGAAAGTTTATACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTTGGCCTGAGGTTTTGTAATTCACCACCTCCTGAAAGTTTATACA  350

seq1  GTGTGACTATCTGGTCTCCCATCCCTGCTACCATGCCGTTCTTGCTATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGACTATCTGGTCTCCCATCCCTGCTACCATGCCGTTCTTGCTATAA  400

seq1  AAAACTGTATCTCCTTGGACTTATGAGTCCAAACCAAACCATTTCCCTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGTATCTCCTTGGACTTATGAGTCCAAACCAAACCATTTCCCTTA  450

seq1  AGTTACCTTTGTTGGATATTTTATAACAGCAAATGGAAAAGTAGTTAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACCTTTGTTGGATATTTTATAACAGCAAATGGAAAAGTAGTTAAGA  500

seq1  CAACACCAACATCAACCCTCCAGAAATGCAATGAATGTACATTTCCCTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACCAACATCAACCCTCCAGAAATGCAATGAATGTACATTTCCCTTG  550

seq1  TAAATTCATAGATATTTACTTTCTTGTAGAGTTCCCTCTTCATTGAAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTCATAGATATTTACTTTCTTGTAGAGTTCCCTCTTCATTGAAAAC  600

seq1  CTTATTCCATTTTAAGCTGCTGAAAAACGTGAGTATGTACTGTGTATTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTCCATTTTAAGCTGCTGAAAAACGTGAGTATGTACTGTGTATTGC  650

seq1  CTGTTTTTGTTACTGTTGTGTATATAATGCTACATTTTCCTTCATCAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTTGTTACTGTTGTGTATATAATGCTACATTTTCCTTCATCAATT  700

seq1  AAAATAAATGCATTAAAAAGTAACTAGTTTGCAAAACAATTATTTCATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAATGCATTAAAAAGTAACTAGTTTGCAAAACAATTATTTCATTT  750

seq1  CCTTAGAATTTCATGCTAAGAATGAGATACTATCCAAAAGACATAATTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGAATTTCATGCTAAGAATGAGATACTATCCAAAAGACATAATTCT  800

seq1  CATGATGCTAGGTAGCCAATCACCTTTTCTAATTTTCAGCAA-TTTCAAA  849
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CATGATGCTAGGTAGCCAATCACCTTTTCTAATTTTCAGCAATTTTCAAA  850

seq1  TGAGCTATTTCCTTAATTAAGTAACTTCTTCCAAATGGAATAGTATTCAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTATTTCCTTAATTAAGTAACTTCTTCCAAATGGAATAGTATTCAT  900

seq1  GTAATTTTTAATAACCCTGCAAGCAATGTA-TTATGTATAGAAGTTGGAA  948
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GTAATTTTTAATAACCCTGCAAGCAATGTATTTATGTATAGAAGTTGGAA  950

seq1  GGCAAGTGGCAGACTTTTTCAGAGTC-ATAATTTTACATGTAAAATTT-G  996
      |||||||||||||||||||||||||| ||||||||||||||||||||| |
seq2  GGCAAGTGGCAGACTTTTTCAGAGTCAATAATTTTACATGTAAAATTTGG  1000

seq1  GCAGAGTG-AGTG-TGTTG-AGTTAATATATTAATTAAAATTTTGGTTTT  1043
      |||||||| |||| ||||| |||||||||| || |   || ||||| |||
seq2  GCAGAGTGAAGTGTTGTTGAAGTTAATATACTAGT---AAATTTGGGTTT  1047

seq1  TTATATTTAAAAAGAGCTGTCTTCATAATAAATTTATTAAAGAACAGAAT  1093
      ||||| ||| ||||||||||||||||||| || ||||| |||||| ||||
seq2  TTATA-TTACAAAGAGCTGTCTTCATAAT-AAGTTATT-AAGAACCGAAT  1094

seq1  ATGTACTTTACAAATTAATTTTGTAAATTAT-CAATGTCTTCTATCATT  1141
      |||||||| |||| |||| ||||  | | || |||||||||||||||||
seq2  ATGTACTTGACAAGTTAACTTTGGTAGTAATCCAATGTCTTCTATCATT  1143


seq1: chr1_125726504_125727569
seq2: B6Ng01-200K10.g_68_1140 (reverse)

seq1  ACATATAAAATCTG-TATTATTT---CCCTATCAGATCTAGAG-AACTGA  45
      |||||||||  ||| ||||||||   || |||||||||||||| ||||||
seq2  ACATATAAATCCTGTTATTATTTTCCCCTTATCAGATCTAGAGAAACTGA  50

seq1  AAC--TTTAGTTGGGGGGGGGGGGAGGTTCTGGGGTTGCATGTATGCAGG  93
      |||  || ||||||||||||||||||| ||| ||||||||||||||||||
seq2  AACCTTTAAGTTGGGGGGGGGGGGAGG-TCT-GGGTTGCATGTATGCAGG  98

seq1  ATGTTC-TCTGCAGAGTGACTATAGCAGCTCTCAGTCTACCTG-AGATAC  141
      |||||| ||||||||||||||||||||||||||||||||| || ||||||
seq2  ATGTTCTTCTGCAGAGTGACTATAGCAGCTCTCAGTCTACTTGAAGATAC  148

seq1  AGTCAGTCAACAG-AGCATGCTCTTCAAAGCCTGTCTCGCAGGTACTCAA  190
      ||||||||||||| |||||||||||| |||||||||||||||||||||||
seq2  AGTCAGTCAACAGAAGCATGCTCTTC-AAGCCTGTCTCGCAGGTACTCAA  197

seq1  AGGAGATGGGTACAATGAT-AAAAACCTATAACAGGTTACTGTAGAGCCT  239
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AGGAGATGGGTACAATGATAAAAAACCTATAACAGGTTACTGTAGAGCCT  247

seq1  GTTCCAATCTCCTTTGCAGTTCTCTTGGAGCCAGGCCTCAGCCCAGATAG  289
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GTTCCAATCTCC-TTGCAGTTCTCTTGGAGCCAGGCCTCAGCCCAGATAG  296

seq1  GAGCAGAGCACACCTTCAGGCTTCTCTGTTTTTCCCTCTTCATAGTCTAT  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGAGCACACCTTCAGGCTTCTCTGTTTTTCCCTCTTCATAGTCTAT  346

seq1  TTCCTCTCCTGTATCTTTCCAAGTCTTAGTACAATTAATTGTGAAGATGC  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTCCTGTATCTTTCCAAGTCTTAGTACAATTAATTGTGAAGATGC  396

seq1  ACAAGAATCTGCAAACTCCATACCTGCTCACCAGACTCAGATCTACTCCT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAATCTGCAAACTCCATACCTGCTCACCAGACTCAGATCTACTCCT  446

seq1  AAAACACTAGTGTGAAAGCAGGGAGCTTCTGAAAGAGTTTGGTCTAAAGA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACACTAGTGTGAAAGCAGGGAGCTTCTGAAAGAGTTTGGTCTAAAGA  496

seq1  AAAACAAAAAGAAATACTATTTCTCTTAGAGGCTCCTGTCTCCTGTACAT  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAAAGAAATACTATTTCTCTTAGAGGCTCCTGTCTCCTGTACAT  546

seq1  CCATTATTAGGATGCTAGAAGACCTGTGTACTACTCTTTCGCCATCCATC  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTATTAGGATGCTAGAAGACCTGTGTACTACTCTTTCGCCATCCATC  596

seq1  CACTTCTTAACACATCCTCTGATGCCAGGCTTTCAGTTTTAATAGTCATG  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCTTAACACATCCTCTGATGCCAGGCTTTCAGTTTTAATAGTCATG  646

seq1  TGAACATTCTTATATCAAATACCACTGGCAAAATAAGAACTTCTAGATCC  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACATTCTTATATCAAATACCACTGGCAAAATAAGAACTTCTAGATCC  696

seq1  ACCAGAATAATCTCACCTACCTACCCATTTTGCTTCCTCCAGCATTGGTC  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAATAATCTCACCTACCTACCCATTTTGCTTCCTCCAGCATTGGTC  746

seq1  TACTGACTATACTCAGTTGCAAATATTCTTCCCATTTCTTTATATATCCA  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGACTATACTCAGTTGCAAATATTCTTCCCATTTCTTTATATATCCA  796

seq1  CTGAATTTTTTCTCATTTAGTAATGTATATATGTCTCTTTCTAATAATCC  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATTTTTTCTCATTTAGTAATGTATATATGTCTCTTTCTAATAATCC  846

seq1  CTGACCATGATTCACATTCTCATCCATTTCTGAAACTCCCCTGTTCATGT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCATGATTCACATTCTCATCCATTTCTGAAACTCCCCTGTTCATGT  896

seq1  CATAAGGAAGATTTGAAAACTAACTTGTCACAACTCTGTGGAGTACTACA  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGGAAGATTTGAAAACTAACTTGTCACAACTCTGTGGAGTACTACA  946

seq1  CCATGGCTGGGAATACCATTTGTGTTTTGACTATGAGCTCATGTTCGAAA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGCTGGGAATACCATTTGTGTTTTGACTATGAGCTCATGTTCGAAA  996

seq1  CATTGTATAAACAATGATCATACAAAACCTTCCTAATACTCAGTCTCTCA  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTATAAACAATGATCATACAAAACCTTCCTAATACTCAGTCTCTCA  1046

seq1  ACTTGAAGATGAAGAACAATAGAATTC  1066
      |||||||||||||||||||||||||||
seq2  ACTTGAAGATGAAGAACAATAGAATTC  1073


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