BAC Information

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BAC

Clone NameB6Ng01-200O16
Chromosome1 (Build37)
Map Location 80,732,695 - 80,865,624
singlet/doubletdoublet
Overlap geneDock10
Upstream geneWdfy1, Mrpl44, Serpine2, EG433326, LOC665064, LOC100039325, A830043J08Rik, 2310015K22Rik, Cul3, EG620899, 1700016L21Rik
Downstream geneLOC665092, 9430031J16Rik, EG621020, LOC433328, EG665145
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-200O16.bB6Ng01-200O16.g
ACCGA021836GA021837
length1,1701,123
definitionB6Ng01-200O16.b B6Ng01-200O16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,732,695 - 80,733,879)(80,864,498 - 80,865,624)
sequence
gaattcaatcaaacaaaaccctgtgttgactgagttagcctggtaatcct
ggtttgagccatcattttatttataattgcatctgctttttgttaactct
gccaacaacaaaaacagaggccaccttctggcttgggagagccctccaaa
tcaattacactgcttacagtgacagcatagttggcccatacatgtgcaac
aaccactgtttgtcaagtttttcaatagcaaaaaataagctttcagcaaa
attataatgacatggcatccagtgtgctttgcaaatggcatatttgtgta
tttttttaaaaagcactgtgcatttggaaacactttataatttttgtctt
gcaagcatttattcttctgtgttcaagtctgaatatcacatcaaccataa
gacctaatagttcatctgtttccctgccagctgagatggagaaatgtgca
tccagggttagtgtagagtcagccaccatttctggaaggcttaaatcaaa
gtacagcttgttatcaacatcagctcctctctagaggagcagttctcata
gaagggaaacaagttgttgctggaagtggagaagctctacgcctttttga
gatatgatatagacctttcttttgctctgacaccaatagcaaccatcctt
taatgtagttgcacatcttctaagccccttttagtggattgttcaaaaga
cctggagagttcagttagagaaggaagagagcctcagagctggagcacag
tgaagatgtgaagacggaccctcctcagcatctgctctttcatgttctag
gcatgaatccctttacagcttcaggacctctgctatgatgtgggggctgt
gaatgagttcctgctgctgctttaaccatggtgatgagattgtttccctg
agcgtatatggagagtcaccacattccccaaggaaataggctctgggttc
ccaagatctgaaacagactctcatggttaagtaaagagacactgtaattg
gggactggcagctcaagctcaggagaggtgtggtttattttttttcctgc
taagaatacaagtcctcaggccaagtccactgccagctctaggttctgct
ggatctttcttgtaccaattggatcatctgccatctcgagccaacctaac
tccctggccatcccaactgg

gaattcagcagcatgcattcagctgttctcttccaacagctgacacagtt
catccagatgcttcaagtgcctgctgccttggctttccaccatggtaggc
tggacagtgaatcatgagctaaagcaggttgttttccttagagtattttg
ctgtagcaacaaaaagtaaacaaagatatgttattgaaaagattcaatag
taagaggacccaagactatatgcatgctgctccaaaccaaagatggcttg
cttcgcattttccctgggaatcatcttagttagtgttctactgttctaaa
gagaccccatgaccaaggcatggaggtttaatctggggggttacttacag
tttaggctggttaggtcattattgtcatggagggaagcacacaagtggaa
ccatagctaagaactttatattctgctccacaggcaaagagagacagaaa
cagaaaagatagagtgaggagagaaaaacagagagacagacagacagaca
gacagacagacacagagacagacagtgaaagagacacacaaagagaaaga
gagaaactgggagtgtctaatgtgggttttttttaaacctaaaagcccag
acccagagacacatctccaacaagaccacccctttaatccttaagcagaa
cgtcaactgggacatgttgttcaaacacatgagcctacgagggacattct
cattcaaaccacaggaataaacacacatagaatgctgtataaacaaacac
acatacacacacacagagtttgtagtccgtgtttagtgatgatataaaaa
tagaacaggaaaatgaagctagtgtttgtttagacaagttgagtccactt
gaactgctgagggagaaatatactaagctgtgactttactaataattttc
tatcttgagaataaccgctgggttcttacatagttagaagaaaaaataca
gagagatacccaataacaccaatttccttcaaatgcatattgtacagagc
attatcatacaggattattaatactgatgcagtctactgatagactgttg
tgtggtgccaaatactcacacacttgagctctgtacagtgtttgttggca
tttattgtaacttaatcagtgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_80732695_80733879
seq2: B6Ng01-200O16.b_48_1217

seq1  GAATTCAATCAAACAAAACCCTGTGTTGACTGAGTTAGCCTGGTAATCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCAAACAAAACCCTGTGTTGACTGAGTTAGCCTGGTAATCCT  50

seq1  GGTTTGAGCCATCATTTTATTTATAATTGCATCTGCTTTTTGTTAACTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGAGCCATCATTTTATTTATAATTGCATCTGCTTTTTGTTAACTCT  100

seq1  GCCAACAACAAAAACAGAGGCCACCTTCTGGCTTGGGAGAGCCCTCCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACAACAAAAACAGAGGCCACCTTCTGGCTTGGGAGAGCCCTCCAAA  150

seq1  TCAATTACACTGCTTACAGTGACAGCATAGTTGGCCCATACATGTGCAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTACACTGCTTACAGTGACAGCATAGTTGGCCCATACATGTGCAAC  200

seq1  AACCACTGTTTGTCAAGTTTTTCAATAGCAAAAAATAAGCTTTCAGCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACTGTTTGTCAAGTTTTTCAATAGCAAAAAATAAGCTTTCAGCAAA  250

seq1  ATTATAATGACATGGCATCCAGTGTGCTTTGCAAATGGCATATTTGTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAATGACATGGCATCCAGTGTGCTTTGCAAATGGCATATTTGTGTA  300

seq1  TTTTTTTAAAAAGCACTGTGCATTTGGAAACACTTTATAATTTTTGTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAAAAAGCACTGTGCATTTGGAAACACTTTATAATTTTTGTCTT  350

seq1  GCAAGCATTTATTCTTCTGTGTTCAAGTCTGAATATCACATCAACCATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCATTTATTCTTCTGTGTTCAAGTCTGAATATCACATCAACCATAA  400

seq1  GACCTAATAGTTCATCTGTTTCCCTGCCAGCTGAGATGGAGAAATGTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTAATAGTTCATCTGTTTCCCTGCCAGCTGAGATGGAGAAATGTGCA  450

seq1  TCCAGGGTTAGTGTAGAGTCAGCCACCATTTCTGGAAGGCTTAAATCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGGTTAGTGTAGAGTCAGCCACCATTTCTGGAAGGCTTAAATCAAA  500

seq1  GTACAGCTTGTTATCAACATCAGCTCCTCTCTAGAGGAGCAGTTCTCATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGCTTGTTATCAACATCAGCTCCTCTCTAGAGGAGCAGTTCTCATA  550

seq1  GAAGGGAAACAAGTTGTTGCTGGAAGTGGAGAAGCTCTACGCCTTTTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGAAACAAGTTGTTGCTGGAAGTGGAGAAGCTCTACGCCTTTTTGA  600

seq1  GATATGATATAGACCTTTCTTTTGCTCTGACACCAATAGCAACCATCCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGATATAGACCTTTCTTTTGCTCTGACACCAATAGCAACCATCCTT  650

seq1  TAATGTAGTTGCACATCTTCTAAGCCCCTTTTAGTGGATTGTTCAAAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTAGTTGCACATCTTCTAAGCCCCTTTTAGTGGATTGTTCAAAAGA  700

seq1  CCTGGAGAGTTCAGTTAGAGAAGGAAGAGAGCCTCAGAGCTGGAGCACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGAGTTCAGTTAGAGAAGGAAGAGAGCCTCAGAGCTGGAGCACAG  750

seq1  TGAAGATGTGAAGACGGACCCTCCTCAGCATCTGCTCTTTCATGTTCTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGATGTGAAGACGGACCCTCCTCAGCATCTGCTCTTTCATGTTCTAG  800

seq1  GCATGAATCCCTTTACAGCTTCAGGACCTCTGCTATGATGTGGGGGCTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGAATCCCTTTACAGCTTCAGGACCTCTGCTATGATGTGGGGGCTGT  850

seq1  GAATGAGTTCCTGCTGCTGCTTTAACCATGGTGATGAGATTGTTT-CCTG  899
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GAATGAGTTCCTGCTGCTGCTTTAACCATGGTGATGAGATTGTTTCCCTG  900

seq1  AGCGTATATGGAGAGTCACCACATTCCCCAAGGAAAATAGGCTCTGGGTT  949
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AGCGTATATGGAGAGTCACCACATTCCCCAAGG-AAATAGGCTCTGGGTT  949

seq1  CCCAAGATCTGAAACAGACTCTCATGGTTAAGTAAAAGAAGACAACTGTA  999
      ||||||||||||||||||||||||||||||||||||   |||| ||||||
seq2  CCCAAGATCTGAAACAGACTCTCATGGTTAAGTAAA--GAGAC-ACTGTA  996

seq1  AATTTGGGGACTGGCAGCTTCAAAGCTCAAGAGA-GTGTGGTTTAATTTT  1048
      |  ||||||||||||||||   ||||||| |||| ||||||||||  |||
seq2  A--TTGGGGACTGGCAGCT--CAAGCTCAGGAGAGGTGTGGTTTA--TTT  1040

seq1  TTTTTCCTGGCTAAG-ATACAAGTCCTCAGCCCAGTCCCACTGCAGCCTC  1097
      |||||||| |||||| |||||||||||||| |||   |||||||   || 
seq2  TTTTTCCT-GCTAAGAATACAAGTCCTCAGGCCAAGTCCACTGCCAGCT-  1088

seq1  CTAGGTTCCTGCCTGGTCCTTTTCTTTGTACCCATTTGGATCATTCTGCC  1147
      ||||||| ||| ||||  ||||   ||||| ||| |||||||| ||||||
seq2  CTAGGTT-CTG-CTGGATCTTT--CTTGTA-CCAATTGGATCA-TCTGCC  1132

seq1  ATCTCCTCACCCAACCCCAACTCCCTG--CATCCC-ACTGG  1185
      |||||   | |||| || |||||||||  |||||| |||||
seq2  ATCTC--GAGCCAA-CCTAACTCCCTGGCCATCCCAACTGG  1170


seq1: chr1_80864498_80865624
seq2: B6Ng01-200O16.g_65_1187 (reverse)

seq1  TTCACTGAATTAAGGTACAATAAATGGCCAAAACAAAACACTGTACAGAG  50
      ||||||| |||||| |||||||||| |||||    |||||||||||||||
seq2  TTCACTG-ATTAAGTTACAATAAAT-GCCAA---CAAACACTGTACAGAG  45

seq1  CTCAAAGTGTGTGAGTATTT-GCACCACACAACAGTCTATCAGTAGACTG  99
      ||| |||||||||||||||| |||||||||||||||||||||||||||||
seq2  CTC-AAGTGTGTGAGTATTTGGCACCACACAACAGTCTATCAGTAGACTG  94

seq1  CATCAGTATTAAT-ATCCTGGTTATGATATTGCTCTGTACAATATTGCAT  148
      ||||||||||||| ||||||  ||||||| |||||||||||||| |||||
seq2  CATCAGTATTAATAATCCTG--TATGATAATGCTCTGTACAATA-TGCAT  141

seq1  TTGAAGGAAATTGGTGTTATT-GGTATCTCTCTGTATTTTTTCTTCTAAC  197
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTGAAGGAAATTGGTGTTATTGGGTATCTCTCTGTATTTTTTCTTCTAAC  191

seq1  TATGTAAGAA-CCAGCGGTTA-TCTCAAGATAGAAAATTATTAGTAAAGT  245
      |||||||||| |||||||||| ||||||||||||||||||||||||||||
seq2  TATGTAAGAACCCAGCGGTTATTCTCAAGATAGAAAATTATTAGTAAAGT  241

seq1  CACAGCTTAGTATATTTCTCCCTCAGCAGTTCAAGTGGACTCAACTTGTC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTTAGTATATTTCTCCCTCAGCAGTTCAAGTGGACTCAACTTGTC  291

seq1  TAAACAAACACTAGCTTCATTTTCCTGTTCTATTTTTATATCATCACTAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAAACACTAGCTTCATTTTCCTGTTCTATTTTTATATCATCACTAA  341

seq1  ACACGGACTACAAACTCTGTGTGTGTGTATGTGTGTTTGTTTATACAGCA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGGACTACAAACTCTGTGTGTGTGTATGTGTGTTTGTTTATACAGCA  391

seq1  TTCTATGTGTGTTTATTCCTGTGGTTTGAATGAGAATGTCCCTCGTAGGC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATGTGTGTTTATTCCTGTGGTTTGAATGAGAATGTCCCTCGTAGGC  441

seq1  TCATGTGTTTGAACAACATGTCCCAGTTGACGTTCTGCTTAAGGATTAAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGTTTGAACAACATGTCCCAGTTGACGTTCTGCTTAAGGATTAAA  491

seq1  GGGGTGGTCTTGTTGGAGATGTGTCTCTGGGTCTGGGCTTTTAGGTTTAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGGTCTTGTTGGAGATGTGTCTCTGGGTCTGGGCTTTTAGGTTTAA  541

seq1  AAAAAACCCACATTAGACACTCCCAGTTTCTCTCTTTCTCTTTGTGTGTC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACCCACATTAGACACTCCCAGTTTCTCTCTTTCTCTTTGTGTGTC  591

seq1  TCTTTCACTGTCTGTCTCTGTGTCTGTCTGTCTGTCTGTCTGTCTGTCTC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCACTGTCTGTCTCTGTGTCTGTCTGTCTGTCTGTCTGTCTGTCTC  641

seq1  TCTGTTTTTCTCTCCTCACTCTATCTTTTCTGTTTCTGTCTCTCTTTGCC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTTTCTCTCCTCACTCTATCTTTTCTGTTTCTGTCTCTCTTTGCC  691

seq1  TGTGGAGCAGAATATAAAGTTCTTAGCTATGGTTCCACTTGTGTGCTTCC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAGCAGAATATAAAGTTCTTAGCTATGGTTCCACTTGTGTGCTTCC  741

seq1  CTCCATGACAATAATGACCTAACCAGCCTAAACTGTAAGTAACCCCCCAG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATGACAATAATGACCTAACCAGCCTAAACTGTAAGTAACCCCCCAG  791

seq1  ATTAAACCTCCATGCCTTGGTCATGGGGTCTCTTTAGAACAGTAGAACAC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAACCTCCATGCCTTGGTCATGGGGTCTCTTTAGAACAGTAGAACAC  841

seq1  TAACTAAGATGATTCCCAGGGAAAATGCGAAGCAAGCCATCTTTGGTTTG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAAGATGATTCCCAGGGAAAATGCGAAGCAAGCCATCTTTGGTTTG  891

seq1  GAGCAGCATGCATATAGTCTTGGGTCCTCTTACTATTGAATCTTTTCAAT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGCATGCATATAGTCTTGGGTCCTCTTACTATTGAATCTTTTCAAT  941

seq1  AACATATCTTTGTTTACTTTTTGTTGCTACAGCAAAATACTCTAAGGAAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATATCTTTGTTTACTTTTTGTTGCTACAGCAAAATACTCTAAGGAAA  991

seq1  ACAACCTGCTTTAGCTCATGATTCACTGTCCAGCCTACCATGGTGGAAAG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCTGCTTTAGCTCATGATTCACTGTCCAGCCTACCATGGTGGAAAG  1041

seq1  CCAAGGCAGCAGGCACTTGAAGCATCTGGATGAACTGTGTCAGCTGTTGG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGCAGCAGGCACTTGAAGCATCTGGATGAACTGTGTCAGCTGTTGG  1091

seq1  AAGAGAACAGCTGAATGCATGCTGCTGAATTC  1127
      ||||||||||||||||||||||||||||||||
seq2  AAGAGAACAGCTGAATGCATGCTGCTGAATTC  1123


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