BAC Information

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BAC

Clone NameB6Ng01-201A01
Chromosome1 (Build37)
Map Location 135,042,592 - 135,261,641
singlet/doubletdoublet
Overlap genePlekha6, Golt1a, Kiss1, LOC100038824, Ren1, Etnk2
Upstream geneLOC100042221, Lemd1, EG638532, Klhdc8a, Nuak2, Tmcc2, Ripk5, Rbbp5, Tmem81, Cntn2, Nfasc, Lrrn2, Mdm4, LOC638636, Pik3c2b, Ppp1r15b
Downstream geneSox13, LOC667371, Snrpe, Zc3h11a, LOC667118, Lax1, Atp2b4, Optc, Prelp, LOC100042352, LOC100042358, Fmod, Btg2, EG667414, Chit1, Chi3l1, Mybph, Adora1, Myog, Ppfia4, LOC100042382, Tmem183a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-201A01.bB6Ng01-201A01.g
ACCGA021899GA021900
length494850
definitionB6Ng01-201A01.b B6Ng01-201A01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,261,142 - 135,261,641)(135,042,592 - 135,043,922)
sequence
cacaccaggaggaacaggagacaatatgagtgggagcccagactctctgg
gcagggtgataaggagggaggaaccctgaactaaaggtttatgggcgcta
tggggcagagctggatgggacttcaggggacccaccccttctaggtgaga
cgacaggcctagtgggggtccagattagcatctggtatgcagtgctgggt
ttaatctcaaatatggcttgatgccttcactgtctgttcctgaccaggtc
ttctgaaaatgttaccacattcagcccagattctccttagagctgcccct
tccatactcagaaggccaatgacatggggcccgaaccctccaaagcaggc
tgtcaggggtgtagggctgggtaggtttttaagagaatgcaggacagcga
gggagggagtaagctaggggctcgcaatgggcagttctgcccacaggtgc
gtgtgtgggacaaagtattcagatgaggtgggaagaaaaaggag
gaattcaaacgtgaacaaatcagtgggggcttttcttttccagaattaat
acgatgtatgaaaagactatatcaccctggagactgctaacattgacttt
ggattcccagcaatgctcctctgaatccacaagatggcgctgactcacca
ggtcagagtgacggatgggccggtggttactgacagtctaatggcaattg
ctcccttggaaggtctccttccttattgaacaacccctgcctggctctgg
cttgcctgcccattcaagcctgactccaccttcttgaggtgactacccgg
aagtggggctggtccttattagaaacccaaagtttatatttgaacacaaa
taaacgagggtgttcttcctgctaaacacagcaaatgagtgaaggggctc
ggacagtttctagagttttccagctatagtacttgcctcctgtgcgcatt
ccaccctggggcagtggttccaagggagttgtacacatgactggcctgcg
aggaggaaaaacacgagccatttgattgtgcgcacacacacatgcgcaca
cacacacacacacacacacaccccgccccgtggcaactacacagccaagg
ccaagcagacttaaggctgtacttttggtgggttggtattggccccaaat
gagccaaagtcagatgtagatgaaatgctgctctacgtccttccagtctg
tgtccctgagtcagccctccgcgtgtttgcatatgatttctctgtacctg
catgacccaggcgacttccttgcagtatcacccaatgcatctctcttggt
ttgttttgattgacttcaaaaagaggatgggcactttccttttgctgggg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_135261142_135261641
seq2: B6Ng01-201A01.b_46_545 (reverse)

seq1  CTCCATTTTCTTCCCACCTCAGCTGAATACTTTGTCCCACACACACACCT  50
      |||| |||||||||||||||| |||||||||||||||||||||| |||||
seq2  CTCCTTTTTCTTCCCACCTCATCTGAATACTTTGTCCCACACACGCACCT  50

seq1  GTGGGCAGAACTGCCCACTGCGAGCCCCTAGCTTACTCCCTCCCTCGCTG  100
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GTGGGCAGAACTGCCCATTGCGAGCCCCTAGCTTACTCCCTCCCTCGCTG  100

seq1  TCCTGCATTCTCTTAAAAACCTACCCAGCCCTACACCCCTGACAGCCTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCATTCTCTTAAAAACCTACCCAGCCCTACACCCCTGACAGCCTGC  150

seq1  TTTGGAGGGTTCGGGCCCCATGTCATTGGCCTTCTGAGTATGGAAGGGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAGGGTTCGGGCCCCATGTCATTGGCCTTCTGAGTATGGAAGGGGC  200

seq1  AGCTCTAAGGAGAATCTGGGCTGAATGTGGTAACATTTTCAGAAGACCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTAAGGAGAATCTGGGCTGAATGTGGTAACATTTTCAGAAGACCTG  250

seq1  GTCAGGAACAGACAGTGAAGGCATCAAGCCATATTTGAGATTAAACCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGAACAGACAGTGAAGGCATCAAGCCATATTTGAGATTAAACCCAG  300

seq1  CACTGCATACCAGATGCTAATCTGGACCCCCACTAGGCCTGTCGTCTCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCATACCAGATGCTAATCTGGACCCCCACTAGGCCTGTCGTCTCAC  350

seq1  CTAGAAGGGGTGGGTCCCCTGAAGTCCCATCCAGCTCTGCCCCATAGCGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAGGGGTGGGTCCCCTGAAGTCCCATCCAGCTCTGCCCCATAGCGC  400

seq1  CCATAAACCTTTAGTTCAGGGTTCCTCCCTCCTTATCACCCTGCCCAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAACCTTTAGTTCAGGGTTCCTCCCTCCTTATCACCCTGCCCAGAG  450

seq1  AGTCTGGGCTCCCACTCATATTGTCTCCTGTTCCTCCTGGTGTGGAATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGGGCTCCCACTCATATTGTCTCCTGTTCCTCCTGGTGTGGAATTC  500

seq1: chr1_135042592_135043922
seq2: B6Ng01-201A01.g_66_915

seq1  GAATTCAAACGTGAACAAATCAGTGGGGGCTTTTCTTTTCCAGAATTAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACGTGAACAAATCAGTGGGGGCTTTTCTTTTCCAGAATTAAT  50

seq1  ACGATGTATGAAAAGACTATATCACCCTGGAGACTGCTAACATTGACTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATGTATGAAAAGACTATATCACCCTGGAGACTGCTAACATTGACTTT  100

seq1  GGATTCCCAGCAATGCTCCTCTGAATCCACAAGATGGCGCTGACTCACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCCCAGCAATGCTCCTCTGAATCCACAAGATGGCGCTGACTCACCA  150

seq1  GGTCAGAGTGACGGATGGGCCGGTGGTTACTGACAGTCTAATGGCAATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGAGTGACGGATGGGCCGGTGGTTACTGACAGTCTAATGGCAATTG  200

seq1  CTCCCTTGGAAGGTCTCCTTCCTTATTGAACAACCCCTGCCTGGCTCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTTGGAAGGTCTCCTTCCTTATTGAACAACCCCTGCCTGGCTCTGG  250

seq1  CTTGCCTGCCCATTCAAGCCTGACTCCACCTTCTTGAGGTGACTACCCGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCTGCCCATTCAAGCCTGACTCCACCTTCTTGAGGTGACTACCCGG  300

seq1  AAGTGGGGCTGGTCCTTATTAGAAACCCAAAGTTTATATTTGAACACAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGGGCTGGTCCTTATTAGAAACCCAAAGTTTATATTTGAACACAAA  350

seq1  TAAACGAGGGTGTTCTTCCTGCTAAACACAGCAAATGAGTGAAGGGGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACGAGGGTGTTCTTCCTGCTAAACACAGCAAATGAGTGAAGGGGCTC  400

seq1  GGACAGTTTCTAGAGTTTTCCAGCTATAGTACTTGCCTCCTGTGCGCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGTTTCTAGAGTTTTCCAGCTATAGTACTTGCCTCCTGTGCGCATT  450

seq1  CCACCCTGGGGCAGTGGTTCCAAGGGAGTTGTACACATGACTGGCCTGCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCTGGGGCAGTGGTTCCAAGGGAGTTGTACACATGACTGGCCTGCG  500

seq1  AGGAGGAAAAACACGAGCCATTTGATTGTGCGCACACACACATGCGCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGAAAAACACGAGCCATTTGATTGTGCGCACACACACATGCGCACA  550

seq1  CACACACACACACACACACACCCCGCCCCGTGGCAACTACACAGCCAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACCCCGCCCCGTGGCAACTACACAGCCAAGG  600

seq1  CCAAGCAGACTTAAGGCTGTAC-TTTGGTGGGTTGGTATTGGCCCCAAAT  649
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CCAAGCAGACTTAAGGCTGTACTTTTGGTGGGTTGGTATTGGCCCCAAAT  650

seq1  GAGCCAAAGTCAGATGTAGATGAAATGCTGCTCTACGTCCTTCCATTCTG  699
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GAGCCAAAGTCAGATGTAGATGAAATGCTGCTCTACGTCCTTCCAGTCTG  700

seq1  TGTCCCTGAGTCAGTCCTCCGCGTGTTTGCATATGATTTCCCTGTACCTG  749
      |||||||||||||| ||||||||||||||||||||||||| |||||||||
seq2  TGTCCCTGAGTCAGCCCTCCGCGTGTTTGCATATGATTTCTCTGTACCTG  750

seq1  CAGTGACCCAGGCGACTTCC-TGCAGTATCACCCAATGCATCTCTCTTGG  798
      || ||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CA-TGACCCAGGCGACTTCCTTGCAGTATCACCCAATGCATCTCTCTTGG  799

seq1  TTTGTTTGATTTGACTTCAGAAAGAGGATGGGCACTTTCCTTTGTCT-GG  847
      |||||||   ||||||||| |||||||||||||||||||||||  || ||
seq2  TTTGTTTTGATTGACTTCAAAAAGAGGATGGGCACTTTCCTTTTGCTGGG  849

seq1  GAATTTGCATAAAAGGTTTCTTTTTCTTGTACTTCTGATCTTTTTTTTTT  897
      |                                                 
seq2  G-------------------------------------------------  850

seq1  TTTTTTTTTTTTTTTTGAGAAGACGGTGCGGGGGAGCGTGCAGGGTGTGG  947
                                                        
seq2  --------------------------------------------------  850

seq1  GTGGGTGGGGGATGGGGGTTAATGGGGGGGGGGTAGACAGTCACCTTTAA  997
                                                        
seq2  --------------------------------------------------  850

seq1  GTAGAGTTCCTTCTCCAAGATAACTTTCCAAGAGTGACCTCTCAGTTGGT  1047
                                                        
seq2  --------------------------------------------------  850

seq1  GAGAGGTGGGGCCATGGGAGTGGAGGGTTGGTAGGGGTGGGGTGTACCCA  1097
                                                        
seq2  --------------------------------------------------  850

seq1  ACATTGCCTGAAGGAGGATGCTTTTTTTGTTTGTTTTGTTTTGTTTTGTT  1147
                                                        
seq2  --------------------------------------------------  850

seq1  TTGTTTTGTTTTGTTTGAGACAGGTTTCTCTGTATAGTCCTGGCTGTCCT  1197
                                                        
seq2  --------------------------------------------------  850

seq1  GGAACTCACTTTGTAGACCAGGCTGGCCTTGAACTCAAAAATCTGCCTGC  1247
                                                        
seq2  --------------------------------------------------  850

seq1  CTCTGCCTCCCAAGTGCTGGGATTAAAGGCTTGTGCCACCACGCCCATCG  1297
                                                        
seq2  --------------------------------------------------  850

seq1  AGGATGCTTTTTATAGAGGCAAATCCTGCTGGGG  1331
                                        
seq2  ----------------------------------  850