BAC Information

Click to search

BAC

Clone NameB6Ng01-201D22
Chromosome1 (Build37)
Map Location 74,179,029 - 74,180,079
singlet/doubletsinglet
Overlap geneRufy4
Upstream genePinc, LOC672208, LOC100043291, Tns1
Downstream geneIl8rb, Il8ra, Arpc2, Gpbar1, Aamp, Pnkd, Tmbim1, 2410125D13Rik, Gm216, Slc11a1, Ctdsp1, Vil1, Usp37, Rqcd1, Plcd4, Zfp142, Bcs1l, Rnf25, Stk36, Ttll4, Cyp27a1, Prkag3, Wnt6, Wnt10a, LOC100042901, Cdk5r2, Fev, Cryba2, Ccdc108, Ihh, Nhej1, Slc23a3, 1810031K17Rik, BC038286, Zfand2b, Abcb6, Atg9a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-201D22.bB6Ng01-201D22.g
ACCGA022077GA022078
length5571,074
definitionB6Ng01-201D22.b B6Ng01-201D22.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaaattcacccccatcacctagctgtttttttgtttttgttttgttttga
gatatggttacattatgcagccttggcttgcctggaattcattgtatcaa
ataggcttgttttgaagtcacagaaacccacctgcttttacctcccaagg
aggactggagtttatagtttttaaaaactgtgtgtgctcaatcgaccacc
ccaatatttatctcatgtaggaattgctgagcctgagaaaggggtgggca
tgcagatccaaagctgcatgagatccatccaccaggacacaaggcagcaa
caggataacggggaggaatcctggcgagggtccagtattgatggtgtgac
agaagccagaggcccagaaccagaccaatgactcactgcagtgaacattt
gcaagtaaagatgtgtagacaggatggtatactaactgtagcaatctgag
gcatactacagtttccacgatgagatgttttttatgctttttcttctttt
gggggacaggttgcaagccagttatggagtggggagatgagtgggatttg
gtgtttt
gaattcagggggagcaagaacaacacaggtgacagaggtagctgccactg
gctggagccatgcagagggaggagctgagaaatacctgctgttcttagct
cagacttgtgggtcctatggagtgctggctgagactatctctgctctgac
aattttcccagtaggaggcattcaaatccaataagaagcaagtgctgtcc
cagagctttgtcctctccaatgtcccagatcaatgaccagatgctgaaat
ggggcttctttacaggtgagatgctccaggggagagcagctgcaggaacc
agacactggaggaaccagctgtctgcaggatgcaaccagagaagaccgca
cacctgacctctgtaaacccttgcagccaagccatcttcccacctttctg
gaagagaagagggaggattccagaagcctcagttgtccccagagcacttg
ggaaacagaaagggaaggatttcagctagaccagaaggatggaggcccaa
agcccaggaaattcctggaaaactcaacagccagcatccagcaacagagg
agcagggctaaggatgttaaaatgcagctgacaggaaggaaagttgaagg
aaaaggaagtctgtcggggacagaagatcagagaacaacagaagggatcc
agaaaagggcagcagattgggaccttggccaggggctgatggcccccggt
cttcagggaagagaagatgcagagttaggatacaggtgtgagtggaatca
gcctgatgttctcaggcaatcctgggtcctgggaacaaagaaaagttctc
ccacagagaagccacaagagtggacaggagtgaccagtggtaaccatgca
ggagggatgggtcagaagtgctcttgcaagcagagtgatcaaggtacctg
tcttattggtcttccttctcaagcctgacctgcagctaagtgttctatca
gaaggtagctctgtggctcattccagggcacagatgggtgtaaagggggt
tgttttgcctgttgaaaaagaccttcctgtaacttcaatgcttgattctc
aaatttttggcattggagccaggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_74179029_74180079
seq2: B6Ng01-201D22.g_68_1141

seq1  GAATTCAGGGGGAGCAAGAACAACACAGGTGACAGAGGTAGCTGCCACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGGGAGCAAGAACAACACAGGTGACAGAGGTAGCTGCCACTG  50

seq1  GCTGGAGCCATGCAGAGGGAGGAGCTGAGAAATACCTGCTGTTCTTAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAGCCATGCAGAGGGAGGAGCTGAGAAATACCTGCTGTTCTTAGCT  100

seq1  CAGACTTGTGGGTCCTATGGAGTGCTGGCTGAGACTATCTCTGCTCTGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTTGTGGGTCCTATGGAGTGCTGGCTGAGACTATCTCTGCTCTGAC  150

seq1  AATTTTCCCAGTAGGAGGCATTCAAATCCAATAAGAAGCAAGTGCTGTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCCCAGTAGGAGGCATTCAAATCCAATAAGAAGCAAGTGCTGTCC  200

seq1  CAGAGCTTTGTCCTCTCCAATGTCCCAGATCAATGACCAGATGCTGAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCTTTGTCCTCTCCAATGTCCCAGATCAATGACCAGATGCTGAAAT  250

seq1  GGGGCTTCTTTACAGGTGAGATGCTCCAGGGGAGAGCAGCTGCAGGAACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTTCTTTACAGGTGAGATGCTCCAGGGGAGAGCAGCTGCAGGAACC  300

seq1  AGACACTGGAGGAACCAGCTGTCTGCAGGATGCAACCAGAGAAGACCGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACTGGAGGAACCAGCTGTCTGCAGGATGCAACCAGAGAAGACCGCA  350

seq1  CACCTGACCTCTGTAAACCCTTGCAGCCAAGCCATCTTCCCACCTTTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGACCTCTGTAAACCCTTGCAGCCAAGCCATCTTCCCACCTTTCTG  400

seq1  GAAGAGAAGAGGGAGGATTCCAGAAGCCTCAGTTGTCCCCAGAGCACTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGAAGAGGGAGGATTCCAGAAGCCTCAGTTGTCCCCAGAGCACTTG  450

seq1  GGAAACAGAAAGGGAAGGATTTCAGCTAGACCAGAAGGATGGAGGCCCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACAGAAAGGGAAGGATTTCAGCTAGACCAGAAGGATGGAGGCCCAA  500

seq1  AGCCCAGGAAATTCCTGGAAAACTCAACAGCCAGCATCCAGCAACAGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAGGAAATTCCTGGAAAACTCAACAGCCAGCATCCAGCAACAGAGG  550

seq1  AGCAGGGCTAAGGATGTTAAAATGCAGCTGACAGGAAGGAAAGTTGAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGGCTAAGGATGTTAAAATGCAGCTGACAGGAAGGAAAGTTGAAGG  600

seq1  AAAAGGAAGTCTGTCGGGGACAGAAGATCAGAGAACAACAGAAGGGATCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAAGTCTGTCGGGGACAGAAGATCAGAGAACAACAGAAGGGATCC  650

seq1  AGAAAAGGGCAGCAGATTGGGACCTTGGCCAGGGGCTGATGGCCCCCGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGGGCAGCAGATTGGGACCTTGGCCAGGGGCTGATGGCCCCCGGT  700

seq1  CTTCAGGGAAGAGAAGATGCAGAGTTAGGATACAGGTGTGAGTGGAATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGGGAAGAGAAGATGCAGAGTTAGGATACAGGTGTGAGTGGAATCA  750

seq1  GCCTGATGTTCTCAGGCAATCCTGGGTCCTGGGAACAAAGAAAAGTTCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGATGTTCTCAGGCAATCCTGGGTCCTGGGAACAAAGAAAAGTTCTC  800

seq1  CCACAGAGAAGCCACAAGAGTGGACAGGAGTGACCAGTGG-AACCATGCA  849
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CCACAGAGAAGCCACAAGAGTGGACAGGAGTGACCAGTGGTAACCATGCA  850

seq1  GGA-GGATGGGTCAGAAGTGCCCTTGC-AGCAGGAGGTGATCAAGGTACC  897
      ||| ||||||||||||||||| ||||| |||||   ||||||||||||||
seq2  GGAGGGATGGGTCAGAAGTGCTCTTGCAAGCAG--AGTGATCAAGGTACC  898

seq1  TGTC-TATT-GTCT--CCTCTCAAGCCTGACCTGCAGCTAAGTG-TCTA-  941
      |||| |||| ||||  | |||||||||||||||||||||||||| |||| 
seq2  TGTCTTATTGGTCTTCCTTCTCAAGCCTGACCTGCAGCTAAGTGTTCTAT  948

seq1  CAG-AGGTAGC-CTGTGGC-CATTCCAGGCCACAGATGGGTGTAA--GGG  986
      ||| ||||||| ||||||| ||||||||| |||||||||||||||  |||
seq2  CAGAAGGTAGCTCTGTGGCTCATTCCAGGGCACAGATGGGTGTAAAGGGG  998

seq1  GTTG-TTTGCTTGT--GAAAAGACCTT-CTGTAAC-TCA--GGCTGA-TC  1028
      |||| ||||| |||   |||||||||| ||||||| |||  |  ||| ||
seq2  GTTGTTTTGCCTGTTGAAAAAGACCTTCCTGTAACTTCAATGCTTGATTC  1048

seq1  TCAAATTT---GCTATGTAGCCAGGC  1051
      ||||||||   ||  || ||||||||
seq2  TCAAATTTTTGGCATTGGAGCCAGGC  1074