BAC Information

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BAC

Clone NameB6Ng01-202D07
Chromosome1 (Build37)
Map Location 57,153,419 - 57,346,514
singlet/doubletdoublet
Overlap genenone
Upstream geneHsfy2, Satb2, EG329160, 9130024F11Rik, LOC100042869
Downstream geneLOC383509, 1700066M21Rik, 1110034B05Rik, 9430016H08Rik, LOC667339, 2810022L02Rik, Kctd18, Sgol2, Aox1, Aox3, Aox4, Aox3l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-202D07.bB6Ng01-202D07.g
ACCGA022766GA022767
length1,1561,142
definitionB6Ng01-202D07.b B6Ng01-202D07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,345,355 - 57,346,514)(57,153,419 - 57,154,571)
sequence
gaattcctcctgtgaaagatttagtctgaaagttggggtccatggttcct
tccacagatgcacagtgtcaaaaccatcttgcaaaaggatggttgagcac
acacactgctttaggaaggtagaacggctccatctatagggaacccttcc
agcactgtatccagtgtctcgctcgcatttagtttttctttctgtggact
ccgctgtgtggatgaaagttcatcttccctccctcttgctatgaaagcac
ccaactttgcagttatgtgtattttatggctttagtcatcagatttccag
attcagctgtggtttccttttggtacatgtcctaaaaacttaaagcgcag
tatgtaatgatagctagttgcctttagtgtaatagccatttgtattttta
aacccatgtctcagcctggtgcttcactctgcatgttaatctgatgtaga
gaccacatttacgcaagggcttgccttattttaaccttactcatggtttt
ataccaacaacctgcaaggtttctggcatttgtcagctttttggtactta
aaaaaaaaacatttgatgaggggttaccttggttaaagggattctgttta
ttcaaactgtaatataatctattaatctggacttctctacttagatataa
aaatgtcatatagcataaaacaccagggtaggcttctccacctgcatcca
ctataatatactagacactggaaaaggccttagtataaaaagcaatactt
ctgaagacattctaagcaacttctgcaccctggagatgaaattcccttat
gtggaatgaaatccatagactctcttaccactgactgaaaccagtagtgt
ctgaagccatttttgaaatattttatttattttttatttttaaatggggg
aaaactctatgagtttctcccaagaaccatcccttttagttttctactgg
gctcttcactattgtttgtctgaaagcagttttatatttgtgttatttgt
agacgtggtcccaccacagcatctctaaaccagacatatagcatatctca
cagtcactgctgtcagctcaacgcaaataatgcatttgtgattgcaaagc
tacaaatcagaatgtttacttaagtaccgtttggattttttatcttgttt
tcccct
gaattcttggcatctattgtcccttggagctttcctggggtcctcctgtc
cccatcaggaaggctcactcagtgccacaagaacactgccacccttcgca
ctattctagtagtggagagaagtcaggctgcctagaagaattccaagtgt
ccagggaacccacaaaaggtttcttgcagctttttagctgtctggcgtgc
agcagaaacccctcttgtgtcaactgctaaacactgctgtccctgtgtcc
tgaatggaatgcgccaaaactctggaagaccacagcttcacatgtcggcc
atgtgtgctggcggcagccggctccagccgcctcagacattttaatttgt
cactcgggaaagcagatgtgtcagggagttggagaacttgggaggtgacc
acagcaaactccctgaggggcctaccccaccaggacctctgatgagcctc
atccaggcaggctcagagcagagggggcaaagagagggagaagctatccc
aggcctgggcacacagcgggaggaaggccatgtccctgcctgggattggg
acagagactgaagtctgagtccctgtcatcacctgcctagcactctgcag
gccctgtattgcataatccacatcagcaaagtgctttccaagtgtgtcat
taacattctcagtggccctttgagtagcacacctatcctccgagatttct
tgaagttggtgtgaggatctgttcactgtcctttaaattccactttacat
ccacatgagccccaggaataggtcccatttgttacactttactttatact
caggacatctgcttctgagggaaatggaatttgacattaaaaaaaatgtc
ctgttttcacagtgaaaaggagccaataaatgtgttttcaggtagcatcc
atgcctttgaatcaaagcaaactctaatatattcaataaacactaattaa
gttataacacctctgaagcagtaaacactcttgtgtatccaagaaactga
gagacttctctttctccccaccaacacttactctgcccagccctcatcca
cccaccaagaactacacgtgctcatgccacctgacaaatgaaggtcagaa
caaatatatcacttgaaccatggggtggaaagagtgcaattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_57345355_57346514
seq2: B6Ng01-202D07.b_47_1202 (reverse)

seq1  AGGGGGAAACAAAGATAAAAAACCCAAAC-GTACTTAA-TTAACA-TCTG  47
      ||||| |||| ||||||||||| |||||| |||||||| | |||| ||||
seq2  AGGGGAAAAC-AAGATAAAAAATCCAAACGGTACTTAAGTAAACATTCTG  49

seq1  ATGTGTAGCTTTTGCAAACACAAATGCAATATTTGCGTTTGAGCCCTGAC  97
      || |||||| ||||||| |||||||||| |||||||| |||||  |||||
seq2  ATTTGTAGC-TTTGCAATCACAAATGCATTATTTGCG-TTGAG--CTGAC  95

seq1  AGCAGTGACTGTGAGATATGCTATTAATGTCTGGTTTAGAGATGCTTGTG  147
      ||||||||||||||||||||||||  ||||||||||||||||||| ||||
seq2  AGCAGTGACTGTGAGATATGCTAT--ATGTCTGGTTTAGAGATGC-TGTG  142

seq1  GTGGGACCACGTCTAC-AATAACACAAATATAAAACTGCTTTCAGACAAA  196
      |||||||||||||||| |||||||||||||||||||||||||||||| ||
seq2  GTGGGACCACGTCTACAAATAACACAAATATAAAACTGCTTTCAGAC-AA  191

seq1  ACAATAGTGAAGAGCCCAGTAGAAAACTAAAA-GGATGGTTCTTGGGAGA  245
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ACAATAGTGAAGAGCCCAGTAGAAAACTAAAAGGGATGGTTCTTGGGAGA  241

seq1  AACTCATAGAGTTTTCCCCCATTTAAAAATAAAAAATAAATAAAATATTT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCATAGAGTTTTCCCCCATTTAAAAATAAAAAATAAATAAAATATTT  291

seq1  CAAAAATGGCTTCAGACACTACTGGTTTCAGTCAGTGGTAAGAGAGTCTA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATGGCTTCAGACACTACTGGTTTCAGTCAGTGGTAAGAGAGTCTA  341

seq1  TGGATTTCATTCCACATAAGGGAATTTCATCTCCAGGGTGCAGAAGTTGC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTCATTCCACATAAGGGAATTTCATCTCCAGGGTGCAGAAGTTGC  391

seq1  TTAGAATGTCTTCAGAAGTATTGCTTTTTATACTAAGGCCTTTTCCAGTG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAATGTCTTCAGAAGTATTGCTTTTTATACTAAGGCCTTTTCCAGTG  441

seq1  TCTAGTATATTATAGTGGATGCAGGTGGAGAAGCCTACCCTGGTGTTTTA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTATATTATAGTGGATGCAGGTGGAGAAGCCTACCCTGGTGTTTTA  491

seq1  TGCTATATGACATTTTTATATCTAAGTAGAGAAGTCCAGATTAATAGATT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATATGACATTTTTATATCTAAGTAGAGAAGTCCAGATTAATAGATT  541

seq1  ATATTACAGTTTGAATAAACAGAATCCCTTTAACCAAGGTAACCCCTCAT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTACAGTTTGAATAAACAGAATCCCTTTAACCAAGGTAACCCCTCAT  591

seq1  CAAATGTTTTTTTTTTAAGTACCAAAAAGCTGACAAATGCCAGAAACCTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTTTTTTTTTTAAGTACCAAAAAGCTGACAAATGCCAGAAACCTT  641

seq1  GCAGGTTGTTGGTATAAAACCATGAGTAAGGTTAAAATAAGGCAAGCCCT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTTGTTGGTATAAAACCATGAGTAAGGTTAAAATAAGGCAAGCCCT  691

seq1  TGCGTAAATGTGGTCTCTACATCAGATTAACATGCAGAGTGAAGCACCAG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTAAATGTGGTCTCTACATCAGATTAACATGCAGAGTGAAGCACCAG  741

seq1  GCTGAGACATGGGTTTAAAAATACAAATGGCTATTACACTAAAGGCAACT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGACATGGGTTTAAAAATACAAATGGCTATTACACTAAAGGCAACT  791

seq1  AGCTATCATTACATACTGCGCTTTAAGTTTTTAGGACATGTACCAAAAGG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATCATTACATACTGCGCTTTAAGTTTTTAGGACATGTACCAAAAGG  841

seq1  AAACCACAGCTGAATCTGGAAATCTGATGACTAAAGCCATAAAATACACA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCACAGCTGAATCTGGAAATCTGATGACTAAAGCCATAAAATACACA  891

seq1  TAACTGCAAAGTTGGGTGCTTTCATAGCAAGAGGGAGGGAAGATGAACTT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGCAAAGTTGGGTGCTTTCATAGCAAGAGGGAGGGAAGATGAACTT  941

seq1  TCATCCACACAGCGGAGTCCACAGAAAGAAAAACTAAATGCGAGCGAGAC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCACACAGCGGAGTCCACAGAAAGAAAAACTAAATGCGAGCGAGAC  991

seq1  ACTGGATACAGTGCTGGAAGGGTTCCCTATAGATGGAGCCGTTCTACCTT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGATACAGTGCTGGAAGGGTTCCCTATAGATGGAGCCGTTCTACCTT  1041

seq1  CCTAAAGCAGTGTGTGTGCTCAACCATCCTTTTGCAAGATGGTTTTGACA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAGCAGTGTGTGTGCTCAACCATCCTTTTGCAAGATGGTTTTGACA  1091

seq1  CTGTGCATCTGTGGAAGGAACCATGGACCCCAACTTTCAGACTAAATCTT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCATCTGTGGAAGGAACCATGGACCCCAACTTTCAGACTAAATCTT  1141

seq1  TCACAGGAGGAATTC  1160
      |||||||||||||||
seq2  TCACAGGAGGAATTC  1156

seq1: chr1_57153419_57154571
seq2: B6Ng01-202D07.g_64_1205

seq1  GAATTCTTGGCATCTATTGTCCCTTGGAGCTTTCCTGGGGTCCTCCTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGCATCTATTGTCCCTTGGAGCTTTCCTGGGGTCCTCCTGTC  50

seq1  CCCATCAGGAAGGCTCACTCAGTGCCACAAGAACACTGCCACCCTTCGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCAGGAAGGCTCACTCAGTGCCACAAGAACACTGCCACCCTTCGCA  100

seq1  CTATTCTAGTAGTGGAGAGAAGTCAGGCTGCCTAGAAGAATTCCAAGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCTAGTAGTGGAGAGAAGTCAGGCTGCCTAGAAGAATTCCAAGTGT  150

seq1  CCAGGGAACCCACAAAAGGTTTCTTGCAGCTTTTTAGCTGTCTGGCGTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGAACCCACAAAAGGTTTCTTGCAGCTTTTTAGCTGTCTGGCGTGC  200

seq1  AGCAGAAACCCCTCTTGTGTCAACTGCTAAACACTGCTGTCCCTGTGTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAAACCCCTCTTGTGTCAACTGCTAAACACTGCTGTCCCTGTGTCC  250

seq1  TGAATGGAATGCGCCAAAACTCTGGAAGACCACAGCTTCACATGTCGGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGGAATGCGCCAAAACTCTGGAAGACCACAGCTTCACATGTCGGCC  300

seq1  ATGTGTGCTGGCGGCAGCCGGCTCCAGCCGCCTCAGACATTTTAATTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGCTGGCGGCAGCCGGCTCCAGCCGCCTCAGACATTTTAATTTGT  350

seq1  CACTCGGGAAAGCAGATGTGTCAGGGAGTTGGAGAACTTGGGAGGTGACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCGGGAAAGCAGATGTGTCAGGGAGTTGGAGAACTTGGGAGGTGACC  400

seq1  ACAGCAAACTCCCTGAGGGGCCTACCCCACCAGGACCTCTGATGAGCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAAACTCCCTGAGGGGCCTACCCCACCAGGACCTCTGATGAGCCTC  450

seq1  ATCCAGGCAGGCTCAGAGCAGAGGGGGCAAAGAGAGGGAGAAGCTATCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGGCAGGCTCAGAGCAGAGGGGGCAAAGAGAGGGAGAAGCTATCCC  500

seq1  AGGCCTGGGCACACAGCGGGAGGAAGGCCATGTCCCTGCCTGGGATTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTGGGCACACAGCGGGAGGAAGGCCATGTCCCTGCCTGGGATTGGG  550

seq1  ACAGAGACTGAAGTCTGAGTCCCTGTCATCACCTGCCTAGCACTCTGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGACTGAAGTCTGAGTCCCTGTCATCACCTGCCTAGCACTCTGCAG  600

seq1  GCCCTGTATTGCATAATCCACATCAGCAAAGTGCTTTCCAAGTGTGTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGTATTGCATAATCCACATCAGCAAAGTGCTTTCCAAGTGTGTCAT  650

seq1  TAACATTCTCAGTGGCCCTTTGAGTAGCACACCTATCCTCCGAGATTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTCTCAGTGGCCCTTTGAGTAGCACACCTATCCTCCGAGATTTCT  700

seq1  TGAAGTTGGTGTGAGGATCTGTTCACTGTCCTTTAAATTCCACTTTACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTTGGTGTGAGGATCTGTTCACTGTCCTTTAAATTCCACTTTACAT  750

seq1  CCACATGAGCCCCAGGAATAGGTCCCATTTGTTACACTTTACTTTATACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATGAGCCCCAGGAATAGGTCCCATTTGTTACACTTTACTTTATACT  800

seq1  CAGGACATCTGCTTCTGAGGGAAATGGAATTTGACATTAAAAAAAATGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACATCTGCTTCTGAGGGAAATGGAATTTGACATTAAAAAAAATGTC  850

seq1  CTGTTTTCACAGTGAAAAGGAGCCAATAAATGTGTTTTCAGGTAGCATCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTCACAGTGAAAAGGAGCCAATAAATGTGTTTTCAGGTAGCATCC  900

seq1  ATGCCTTTGAATCAAAGCAAACTCTAATATATTCAATAAACACTAATTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTTTGAATCAAAGCAAACTCTAATATATTCAATAAACACTAATTAA  950

seq1  GTTATAACACCTCTGAAAGCAGTAAACACTCTTGTGGTATTCCAAGAAAC  1000
      ||||||||||||||| ||||||||||||||||||| ||| ||||||||||
seq2  GTTATAACACCTCTG-AAGCAGTAAACACTCTTGT-GTA-TCCAAGAAAC  997

seq1  TGAGAGACCTTCTCTTTCTCCCCACCAACACCTTTACCTCTGCCCAGCCC  1050
      ||||||| |||||||||||||||||||||||  ||| |||||||||||||
seq2  TGAGAGA-CTTCTCTTTCTCCCCACCAACAC--TTA-CTCTGCCCAGCCC  1043

seq1  TCATCCACCCACCACAGAAACTACACCGTTGCTCAGTGCCA-CTGACAAA  1099
      |||||||||||||| || ||||||||   |||||| ||||| ||||||||
seq2  TCATCCACCCACCA-AG-AACTACAC--GTGCTCA-TGCCACCTGACAAA  1088

seq1  TGAAAGTCAGAACAAAT-TATTCCCACTGACACCAT-GGGTGTGAAGAGT  1147
      |||| |||||||||||| |||   ||||   ||||| |||||  ||||||
seq2  TGAAGGTCAGAACAAATATAT---CACTTGAACCATGGGGTGGAAAGAGT  1135

seq1  G-AATTG  1153
      | |||||
seq2  GCAATTG  1142