BAC Information

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BAC

Clone NameB6Ng01-202G11
Chromosome1 (Build37)
Map Location 88,087,235 - 88,246,962
singlet/doubletdoublet
Overlap geneArmc9, B3gnt7, EG383538, Ncl
Upstream geneLOC100040213, LOC100039794, EG665338, Sp110, Sp140, Sp100, A630001G21Rik, Cab39, Itm2c, 4933407L21Rik, Gpr55, Spata3, 2810459M11Rik, Psmd1, Htr2b
Downstream geneSnord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma, Pde6d, Cops7b, Nppc, 4930429A22Rik, EG620213, LOC208256, Akp5, Alpi, Akp3, Ecel1, 1700027L20Rik, Chrnd, Chrng, Eif4e2, Efhd1, Tnrc15, LOC100040600
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-202G11.bB6Ng01-202G11.g
ACCGA022903GA022904
length1,0221,056
definitionB6Ng01-202G11.b B6Ng01-202G11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,087,235 - 88,088,217)(88,245,906 - 88,246,962)
sequence
gaattcatatagcagcataacaaattgaatgccttcccagattctaacca
gctaggcaacctctctcccatctgcctccccaacctgttgctcgtctgtc
cctcttggatagggtcattgggagtgtcctacaggtagcctgagccccac
tctttgaactagagttttctctgaacactccctcccctccccacagacac
atacacacacagacacacaaacacacacagacacacacacacacacacac
acacgacaccccttctgccttgctgcttgatcatctgcccactttttagg
gcctagttcttcctgggtaggaatttgttgcttctgctttttctttacag
cgcttgaccacatcccatccgggggagcagagggagacagtcctgcaagc
ctacatcagcaatgacctcttggattgccacagccataaccaggtgagta
agaggcagccaggccttgtggtggggaggcccttggcagactccaggctt
gtccacgtcctgagcttgcccggcatttcctattcagctacttgagggtc
tgtgttcacctcttgacctacttcagtcgtggagaagattcccaaaaaag
ccagatggcctgatgctctctctgcctcttttctgttagttttccttttc
ccattcccctcctcccacttgaatgatgcttcattttcagagtttgtagc
tggtgttacaatagtgagttttgtcaaatgctataatctctatagccatg
gaaggatgtaattccttcaaatccactgttacttggtgtcttggtgtctt
gttttggtgttggtatttggtgttagggtctcacagtgtccagggctggc
ttcaaatttactcctgaagagctgaaggatgatttgaccttctgatcccc
cctcccccctaaacccccgaaggctggcattggaggcgtgttgccttggg
ccctggcttatatatggtgctgggggattggaagttcagggcttctccaa
tatctcctactaaacaagaaac
gaattcccagctacaaatgtggaaattggtggggaacagcttcatcatga
ttctgatctggaagatttaatttgtatcttagaagggtgtgtactggaaa
agtggttgatagagcacatggatcagtgctggaaataccatacaagagct
tgtgtggtatgtaattctattcccagcataataagaacaaacagtacagt
gcaatctgaaatgacctggacaaggaatggtaccccattgggttgaaaaa
ttcacatagccaggatggttgcacatgcctttaaccccagcacttgggag
ggagaggctggtagatctgagtttgatctggtgtacagagagttccagaa
cagccagggctgtttattagagaaaaaaccctgtcttgaaaaaacaagaa
aaaaaaacctcacagacaaccaaatacagagttttagccactgagtacca
agtctcagcagcaagctgggagtgacgtaatccaatcccatgggaggcta
aagcagtctatgacttcaatgccagttgggtctgcagaactgagttgctg
gatagtgagggatacttagaaactttgtcttgaaaaaaaaaacaagacct
gtcaaatttgagagaagctttgggaaacaaggtttgtaagttccaacaga
gggaacagtggcctttttgacttaaaggttgtcagaggtccagtttaact
agggataatacagtggcccttggcctgtgtacttaatgaatttttcagtg
atctatcaaggatgtttggtttttttgttttttgtttgttttgtataagg
catgggtgcctagataaccttaaatagaaactttcctgtaggtgtttttc
caagtcccactcccaacaaactgattttcaagaaagaccagtcagctatt
ctcaaccaaagaccctctgtagggttgcgcttagcacctgtctggtggcc
ttgagtatgtggtatgaccattgcagtcgcagtctgtctaaaagtggaga
tgcctggcattagatttgtgtcaccagaacagtttggagggtctcttatg
ctgtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_88087235_88088217
seq2: B6Ng01-202G11.b_47_1041

seq1  GAATTCATATAGCAGCATAACAAATTGAATGCCTTCCCAGATTCTAACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATAGCAGCATAACAAATTGAATGCCTTCCCAGATTCTAACCA  50

seq1  GCTAGGCAACCTCTCTCCCATCTGCCTCCCCAACCTGTTGCTCGTCTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGCAACCTCTCTCCCATCTGCCTCCCCAACCTGTTGCTCGTCTGTC  100

seq1  CCTCTTGGATAGGGTCATTGGGAGTGTCCTACAGGTAGCCTGAGCCCCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTGGATAGGGTCATTGGGAGTGTCCTACAGGTAGCCTGAGCCCCAC  150

seq1  TCTTTGAACTAGAGTTTTCTCTGAACACTCCCTCCCCTCCCCACAGACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGAACTAGAGTTTTCTCTGAACACTCCCTCCCCTCCCCACAGACAC  200

seq1  ATACACACACAGACACACAAACACACACAGACACACACACACACACACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACACACAGACACACAAACACACACAGACACACACACACACACACAC  250

seq1  ACACGACACCCCTTCTGCCTTGCTGCTTGATCATCTGCCCACTTTTTAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGACACCCCTTCTGCCTTGCTGCTTGATCATCTGCCCACTTTTTAGG  300

seq1  GCCTAGTTCTTCCTGGGTAGGAATTTGTTGCTTCTGCTTTTTCTTTACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGTTCTTCCTGGGTAGGAATTTGTTGCTTCTGCTTTTTCTTTACAG  350

seq1  CGCTTGACCACATCCCATCCGGGGGAGCAGAGGGAGACAGTCCTGCAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTGACCACATCCCATCCGGGGGAGCAGAGGGAGACAGTCCTGCAAGC  400

seq1  CTACATCAGCAATGACCTCTTGGATTGCCACAGCCATAACCAGGTGAGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATCAGCAATGACCTCTTGGATTGCCACAGCCATAACCAGGTGAGTA  450

seq1  AGAGGCAGCCAGGCCTTGTGGTGGGGAGGCCCTTGGCAGACTCCAGGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAGCCAGGCCTTGTGGTGGGGAGGCCCTTGGCAGACTCCAGGCTT  500

seq1  GTCCACGTCCTGAGCTTGCCCGGCATTTCCTATTCAGCTACTTGAGGGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACGTCCTGAGCTTGCCCGGCATTTCCTATTCAGCTACTTGAGGGTC  550

seq1  TGTGTTCACCTCTTGACCTACTTCAGTCGTGGAGAAGATTCCCAAAAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCACCTCTTGACCTACTTCAGTCGTGGAGAAGATTCCCAAAAAAG  600

seq1  CCAGATGGCCTGATGCTCTCTCTGCCTCTTTTCTGTTAGTTTTCCTTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATGGCCTGATGCTCTCTCTGCCTCTTTTCTGTTAGTTTTCCTTTTC  650

seq1  CCATTCCCCTCCTCCCACTTGAATGATGCTTCATTTTCAGAGTTTGTAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCCCCTCCTCCCACTTGAATGATGCTTCATTTTCAGAGTTTGTAGC  700

seq1  TGGTGTTACAATAGTGAGTTTTGTCAAATGCTATAATCTCTATAGCCATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTTACAATAGTGAGTTTTGTCAAATGCTATAATCTCTATAGCCATG  750

seq1  GAAGGATGTAATTCCTTCAAATCCACTGTTACTTGGTGTCTTGGTGTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGATGTAATTCCTTCAAATCCACTGTTACTTGGTGTCTTGGTGTCTT  800

seq1  GTTTTGGTGTTGGTA-TTGGTGTTAGGGTCTCACAGTGTCCA-GGCTGGC  848
      ||||||||||||||| |||||||||||||||||||||||||| |||||||
seq2  GTTTTGGTGTTGGTATTTGGTGTTAGGGTCTCACAGTGTCCAGGGCTGGC  850

seq1  TTCAAATTTACT-CTGAAG-GCTGAA-GATGATTTGACCTTCTGATCTTC  895
      |||||||||||| |||||| |||||| ||||||||||||||||||||  |
seq2  TTCAAATTTACTCCTGAAGAGCTGAAGGATGATTTGACCTTCTGATCCCC  900

seq1  CTT--CATCTACAACCCCGAAGGCTGGCATTGGAGGCGTGTTGCCT--GG  941
      | |  |  ||| | ||||||||||||||||||||||||||||||||  ||
seq2  CCTCCCCCCTAAACCCCCGAAGGCTGGCATTGGAGGCGTGTTGCCTTGGG  950

seq1  GCCTGGCTTATATATGGTGCTGGGG--ATGGAAG-TCAGGGCTTC  983
       ||||||||||||||||||||||||   |||||| ||||||||||
seq2  CCCTGGCTTATATATGGTGCTGGGGGATTGGAAGTTCAGGGCTTC  995

seq1: chr1_88245906_88246962
seq2: B6Ng01-202G11.g_65_1120 (reverse)

seq1  CCACAGCAAAAGA-ACCCACCAAACTGTTCCCTGCT-ACACAAATCTAAT  48
      |||||||| |||| |||| ||||||||||  ||| | |||||||||||||
seq2  CCACAGCATAAGAGACCCTCCAAACTGTT--CTGGTGACACAAATCTAAT  48

seq1  GCCCACGCCATCCTCACTTTTAGACAGGACTGCGACTGCAATGGTCATAC  98
      |||   | ||||  |||||||||||| |||||||||||||||||||||||
seq2  GCC--AGGCATCTCCACTTTTAGACA-GACTGCGACTGCAATGGTCATAC  95

seq1  CACATACTCAA-GCCACCAGACAGGTGCTAAGCGCAACCCTACAGAGGGT  147
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CACATACTCAAGGCCACCAGACAGGTGCTAAGCGCAACCCTACAGAGGGT  145

seq1  CTTTGGTTGAGAATAGCTGACTGGTCTTTCTTGAAAATCAGTTTGTTGGG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGTTGAGAATAGCTGACTGGTCTTTCTTGAAAATCAGTTTGTTGGG  195

seq1  AGTGGGACTTGGAAAAACACCTACAGGAAAGTTTCTA-TTAAGGTTATCT  246
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGTGGGACTTGGAAAAACACCTACAGGAAAGTTTCTATTTAAGGTTATCT  245

seq1  AGGCACCCATGCCTTATACAAAACAAACAAAAAACAAAAAAACCAAACAT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACCCATGCCTTATACAAAACAAACAAAAAACAAAAAAACCAAACAT  295

seq1  CCTTGATAGATCACTGAAAAATTCATTAAGTACACAGGCCAAGGGCCACT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGATAGATCACTGAAAAATTCATTAAGTACACAGGCCAAGGGCCACT  345

seq1  GTATTATCCCTAGTTAAACTGGACCTCTGACAACCTTTAAGTCAAAAAGG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTATCCCTAGTTAAACTGGACCTCTGACAACCTTTAAGTCAAAAAGG  395

seq1  CCACTGTTCCCTCTGTTGGAACTTACAAACCTTGTTTCCCAAAGCTTCTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGTTCCCTCTGTTGGAACTTACAAACCTTGTTTCCCAAAGCTTCTC  445

seq1  TCAAATTTGACAGGTCTTGTTTTTTTTTTCAAGACAAAGTTTCTAAGTAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTTGACAGGTCTTGTTTTTTTTTTCAAGACAAAGTTTCTAAGTAT  495

seq1  CCCTCACTATCCAGCAACTCAGTTCTGCAGACCCAACTGGCATTGAAGTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCACTATCCAGCAACTCAGTTCTGCAGACCCAACTGGCATTGAAGTC  545

seq1  ATAGACTGCTTTAGCCTCCCATGGGATTGGATTACGTCACTCCCAGCTTG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACTGCTTTAGCCTCCCATGGGATTGGATTACGTCACTCCCAGCTTG  595

seq1  CTGCTGAGACTTGGTACTCAGTGGCTAAAACTCTGTATTTGGTTGTCTGT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGAGACTTGGTACTCAGTGGCTAAAACTCTGTATTTGGTTGTCTGT  645

seq1  GAGGTTTTTTTTTCTTGTTTTTTCAAGACAGGGTTTTTTCTCTAATAAAC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTTTTTTTTCTTGTTTTTTCAAGACAGGGTTTTTTCTCTAATAAAC  695

seq1  AGCCCTGGCTGTTCTGGAACTCTCTGTACACCAGATCAAACTCAGATCTA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTGGCTGTTCTGGAACTCTCTGTACACCAGATCAAACTCAGATCTA  745

seq1  CCAGCCTCTCCCTCCCAAGTGCTGGGGTTAAAGGCATGTGCAACCATCCT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTCTCCCTCCCAAGTGCTGGGGTTAAAGGCATGTGCAACCATCCT  795

seq1  GGCTATGTGAATTTTTCAACCCAATGGGGTACCATTCCTTGTCCAGGTCA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATGTGAATTTTTCAACCCAATGGGGTACCATTCCTTGTCCAGGTCA  845

seq1  TTTCAGATTGCACTGTACTGTTTGTTCTTATTATGCTGGGAATAGAATTA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGATTGCACTGTACTGTTTGTTCTTATTATGCTGGGAATAGAATTA  895

seq1  CATACCACACAAGCTCTTGTATGGTATTTCCAGCACTGATCCATGTGCTC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCACACAAGCTCTTGTATGGTATTTCCAGCACTGATCCATGTGCTC  945

seq1  TATCAACCACTTTTCCAGTACACACCCTTCTAAGATACAAATTAAATCTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAACCACTTTTCCAGTACACACCCTTCTAAGATACAAATTAAATCTT  995

seq1  CCAGATCAGAATCATGATGAAGCTGTTCCCCACCAATTTCCACATTTGTA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATCAGAATCATGATGAAGCTGTTCCCCACCAATTTCCACATTTGTA  1045

seq1  GCTGGGAATTC  1057
      |||||||||||
seq2  GCTGGGAATTC  1056