BAC Information

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BAC

Clone NameB6Ng01-202K23
Chromosome1 (Build37)
Map Location 156,413,728 - 156,509,403
singlet/doubletdoublet
Overlap geneCacna1e
Upstream geneLOC626096, Rgs8, Rgs16, Rnasel, LOC100043347, Rgsl1, 5830403L16Rik, EG433365, Teddm1, LOC100043357, Glul, LOC100043359
Downstream geneLOC671336, Ier5, Mr1, Stx6, EG667867, BC034090, Xpr1, EG433367, Acbd6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-202K23.bB6Ng01-202K23.g
ACCGA023114GA023115
length1,097623
definitionB6Ng01-202K23.b B6Ng01-202K23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(156,413,728 - 156,414,821)(156,508,781 - 156,509,403)
sequence
gaattctttagaaacagtctttggggaacccccttattcccaggtttgag
gcagtcctagctagaagacccaaaccagattgcaggcttccttagccgaa
gcacagcttccatttgaggtcagggggattctctgtcagggttttgcata
tctctgtcaggtattagcatagccctggcctccacttaacagataccagt
gggaatccctgagttgtgacaaatgaaaatgtctccagaatttccaaatg
gtttgcatggaaagataaaaacagcttcagactaaaaacctctggcctca
ggactgcatcttaattagagatcttcaatttcactaattactaatagctc
aggttggaaggtggtggagcagctaccagactgccaaaagagacagacca
tttgtctcagccaatgctaaccactcctaagaaaaggaacatgattgtga
aatgtgaatacagatgcaatttctcaacaaataccttctgttaaggtccc
gaaccaggcagacaattcctcaccaagtaactattcctccttgtccctcc
ttcctcctaacactatgccttggggcctccatcctacctcaagggactta
ggtggtctgttttggaactcaagtgatttcatcctacacattcatgaatt
acctaccaaggagcaaattctttcctctaaagataatcgaacagaagaac
agtcacagtcttgctcaccatggaacttgtagtataataggaatattcat
gtgaacaggtaaaacacacagaaaagtataattgcaaatgaggccagtgt
tggtaagggacagtggggtgctcaggcaagtgatggattcactctggtca
ccagaaaggaaatgatgtgtcttaagagaaagaatcccatgaatgaaagt
gaggtgtggtctacaagaaggaaaaggggtgctttctttgaatgaatgat
actatcatgcagtacctcctcctgcccgatcccatgtagatatttctgaa
acataaaaaaggataaaactcacaggatacctcttagatgagtcttttca
taatgtaccattaactacatcagtattcagtaggccttggggctctt
gaattcttcctgctctgtgtcttagagtccacacgtaaaagtccctgctg
gctctgggctttagtcacgtggcatggaactagtcatccctgggcagttt
gcagagagagggagagggggctgggtgtgagagattggtgtcttaatttt
agcaagacttttggagctccttggaaggcaagctttatttctacaaaaat
agaaagtattattattactacatcttcgtgctgcattggagccaaatact
ggagtcctcaatactgtatttatttccctgggctttgggaagggtggaaa
agaatgggacatttaggttgctaagtgacgtgcttctaaaaatattgaga
ttccctagtggctccttctcctgttcttttggttggactaagaagatgat
aaggtcaagtaatagcctgaccctgtattgaggtgggcccaaggcatctt
gttggggaagaatagaataaactctccctcttggaccctcctacctgctt
ccccttagggcctactactttgagaaatcacaggaaaaactgggcctccc
cctgcctgaatccaagagccttgcctaggcaggcagccctgatggttgcc
atggtgatagtgggtggttgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_156413728_156414821
seq2: B6Ng01-202K23.b_44_1140

seq1  GAATTCTTTAGAAACAGTCTTTGGGGAACCCCCTTATTCCCAGGTTTGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAGAAACAGTCTTTGGGGAACCCCCTTATTCCCAGGTTTGAG  50

seq1  GCAGTCCTAGCTAGAAGACCCAAACCAGATTGCAGGCTTCCTTAGCCGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCCTAGCTAGAAGACCCAAACCAGATTGCAGGCTTCCTTAGCCGAA  100

seq1  GCACAGCTTCCATTTGAGGTCAGGGGGATTCTCTGTCAGGGTTTTGCATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGCTTCCATTTGAGGTCAGGGGGATTCTCTGTCAGGGTTTTGCATA  150

seq1  TCTCTGTCAGGTATTAGCATAGCCCTGGCCTCCACTTAACAGATACCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTCAGGTATTAGCATAGCCCTGGCCTCCACTTAACAGATACCAGT  200

seq1  GGGAATCCCTGAGTTGTGACAAATGAAAATGTCTCCAGAATTTCCAAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATCCCTGAGTTGTGACAAATGAAAATGTCTCCAGAATTTCCAAATG  250

seq1  GTTTGCATGGAAAGATAAAAACAGCTTCAGACTAAAAACCTCTGGCCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCATGGAAAGATAAAAACAGCTTCAGACTAAAAACCTCTGGCCTCA  300

seq1  GGACTGCATCTTAATTAGAGATCTTCAATTTCACTAATTACTAATAGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGCATCTTAATTAGAGATCTTCAATTTCACTAATTACTAATAGCTC  350

seq1  AGGTTGGAAGGTGGTGGAGCAGCTACCAGACTGCCAAAAGAGACAGACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGGAAGGTGGTGGAGCAGCTACCAGACTGCCAAAAGAGACAGACCA  400

seq1  TTTGTCTCAGCCAATGCTAACCACTCCTAAGAAAAGGAACATGATTGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTCAGCCAATGCTAACCACTCCTAAGAAAAGGAACATGATTGTGA  450

seq1  AATGTGAATACAGATGCAATTTCTCAACAAATACCTTCTGTTAAGGTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGAATACAGATGCAATTTCTCAACAAATACCTTCTGTTAAGGTCCC  500

seq1  GAACCAGGCAGACAATTCCTCACCAAGTAACTATTCCTCCTTGTCCCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAGGCAGACAATTCCTCACCAAGTAACTATTCCTCCTTGTCCCTCC  550

seq1  TTCCTCCTAACACTATGCCTTGGGGCCTCCATCCTACCTCAAGGGACTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCTAACACTATGCCTTGGGGCCTCCATCCTACCTCAAGGGACTTA  600

seq1  GGTGGTCTGTTTTGGAACTCAAGTGATTTCATCCTACACATTCATGAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTCTGTTTTGGAACTCAAGTGATTTCATCCTACACATTCATGAATT  650

seq1  ACCTACCAAGGAGCAAATTCTTTCCTCTAAAGATAATCGAACAGAAGAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACCAAGGAGCAAATTCTTTCCTCTAAAGATAATCGAACAGAAGAAC  700

seq1  AGTCACAGTCTTGCTCACCATGGAACTTGTAGTATAATAGGAATATTCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACAGTCTTGCTCACCATGGAACTTGTAGTATAATAGGAATATTCAT  750

seq1  GTGAACAGGTAAAACACACAGAAAAGTATAATTGCAAATGAGGCCAGTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACAGGTAAAACACACAGAAAAGTATAATTGCAAATGAGGCCAGTGT  800

seq1  TGGTAAGGGACAGTGGGGTGCTCAGGCAAGTGATGGATTCACTCTGGTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAGGGACAGTGGGGTGCTCAGGCAAGTGATGGATTCACTCTGGTCA  850

seq1  ACAGAAAGGAAATGATGTGTCTTAAGAGAAAGAATCCCATGAATGAAAGT  900
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAAGGAAATGATGTGTCTTAAGAGAAAGAATCCCATGAATGAAAGT  900

seq1  GAGGTGTGGTCTACAAGAAGGAAAAGGGGTGCTTTCTTTGAATGAATGAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGTGGTCTACAAGAAGGAAAAGGGGTGCTTTCTTTGAATGAATGAT  950

seq1  ACTATCATGCAGTACCTCCTCCTGCCCGATCCCATGTAGATA-TTCTGAA  999
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ACTATCATGCAGTACCTCCTCCTGCCCGATCCCATGTAGATATTTCTGAA  1000

seq1  ACATAAAAAAGAATAAAACTCACAGGATACCTCTTAGATGAGTCTTTTCA  1049
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ACATAAAAAAGGATAAAACTCACAGGATACCTCTTAGATGAGTCTTTTCA  1050

seq1  TAATGTA-CATT-ACTACATCAGTATTCAGTAGCCCTTGGGCCTCTT  1094
      ||||||| |||| |||||||||||||||||||| ||||||| |||||
seq2  TAATGTACCATTAACTACATCAGTATTCAGTAGGCCTTGGGGCTCTT  1097

seq1: chr1_156508781_156509403
seq2: B6Ng01-202K23.g_65_687 (reverse)

seq1  CCCCAACCACCCACTATCACCATGGCAACCATCAGGGCTGCCTGCCTAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAACCACCCACTATCACCATGGCAACCATCAGGGCTGCCTGCCTAGG  50

seq1  CAAGGCTCTTGGATTCAGGCAGGGGGAGGCCCAGTTTTTCCTGTGATTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCTCTTGGATTCAGGCAGGGGGAGGCCCAGTTTTTCCTGTGATTTC  100

seq1  TCAAAGTAGTAGGCCCTAAGGGGAAGCAGGTAGGAGGGTCCAAGAGGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGTAGTAGGCCCTAAGGGGAAGCAGGTAGGAGGGTCCAAGAGGGAG  150

seq1  AGTTTATTCTATTCTTCCCCAACAAGATGCCTTGGGCCCACCTCAATACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTATTCTATTCTTCCCCAACAAGATGCCTTGGGCCCACCTCAATACA  200

seq1  GGGTCAGGCTATTACTTGACCTTATCATCTTCTTAGTCCAACCAAAAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCAGGCTATTACTTGACCTTATCATCTTCTTAGTCCAACCAAAAGAA  250

seq1  CAGGAGAAGGAGCCACTAGGGAATCTCAATATTTTTAGAAGCACGTCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGAAGGAGCCACTAGGGAATCTCAATATTTTTAGAAGCACGTCACT  300

seq1  TAGCAACCTAAATGTCCCATTCTTTTCCACCCTTCCCAAAGCCCAGGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAACCTAAATGTCCCATTCTTTTCCACCCTTCCCAAAGCCCAGGGAA  350

seq1  ATAAATACAGTATTGAGGACTCCAGTATTTGGCTCCAATGCAGCACGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATACAGTATTGAGGACTCCAGTATTTGGCTCCAATGCAGCACGAAG  400

seq1  ATGTAGTAATAATAATACTTTCTATTTTTGTAGAAATAAAGCTTGCCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGTAATAATAATACTTTCTATTTTTGTAGAAATAAAGCTTGCCTTC  450

seq1  CAAGGAGCTCCAAAAGTCTTGCTAAAATTAAGACACCAATCTCTCACACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAGCTCCAAAAGTCTTGCTAAAATTAAGACACCAATCTCTCACACC  500

seq1  CAGCCCCCTCTCCCTCTCTCTGCAAACTGCCCAGGGATGACTAGTTCCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCCCTCTCCCTCTCTCTGCAAACTGCCCAGGGATGACTAGTTCCAT  550

seq1  GCCACGTGACTAAAGCCCAGAGCCAGCAGGGACTTTTACGTGTGGACTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACGTGACTAAAGCCCAGAGCCAGCAGGGACTTTTACGTGTGGACTCT  600

seq1  AAGACACAGAGCAGGAAGAATTC  623
      |||||||||||||||||||||||
seq2  AAGACACAGAGCAGGAAGAATTC  623