BAC Information

Click to search

BAC

Clone NameB6Ng01-202N22
Chromosome1 (Build37)
Map Location 106,549,185 - 106,692,455
singlet/doubletdoublet
Overlap geneLOC100041134, Cdh20
Upstream geneLOC383546
Downstream geneRnf152, LOC100041985, Pign, LOC666249, 2310035C23Rik, LOC100042023
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-202N22.bB6Ng01-202N22.g
ACCGA023245GA023246
length1,0681,143
definitionB6Ng01-202N22.b B6Ng01-202N22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,549,185 - 106,550,251)(106,691,317 - 106,692,455)
sequence
gaattctctcattcttgggaaagctgccagacaatcactacagttcacat
aatgggatcattgaagaatctgcgggtcagacttttttttaacacaccac
aatgctttctgttgtttcctgcataactcagtgctacacagacattttga
tattagcaaatcaaaaattcatttaaatatgaatttaacagtgattttta
aaacaaccacttggaaaccaaaggaacagatcaaaaccctaacaagtagt
gacttgaaactggagagaaaaaaaatcagtgtttgacaactgggaaagat
gtgggtctgcatagaaagaacctccatttgtcctcagaatatgaagtatg
aaatcatctcagtattaaatggttagattttttcatatctaaacaaagcg
cacaatgtccatggatctgcatttagacaagttctgagtttagacaagag
cctgcatctgggtggaaatgaagaatcatggagcaataaattatattccc
aaattgtataacctctcttctttggggttccaaacaaatacaatgagcaa
ttacatgcccatcagacacgataagagcagactaccagagatcagagatt
aacaattttttgagtaaaaccagatatagaaatttataaatgaagaagga
tgcaaagaataaaggagtttaaaaaaatcctaaaccattcatccatattt
ggttctttccatagggcatgccaaggtctttgaacaaaaaactaaaataa
tgaaaccacatctgcagtgcaagtactttataatgtaaagcagaatttta
aaatgccaaccttagaattgagacaggaggctcatattaaaaacctacac
aaaagaccatgggaaaatttcaatggtgtgttaactgtgggaattaattg
ttatgcattttgccaggcctagcactacattgtcagagtttaattaatta
taagaaaagaaaattttaaaatgttttcttttatgtatgtaatttgggag
gaaagagatttaaaaattcctgtggatcagatatacaatcatttcaacta
atttttctgacactctac

gaattcaggtaaatttctaagtgtctactaaagcaagattcaggacttct
ctaaagccaacacttccaggccatggccacagaagtcagattgttgacat
ttgtgtgcagatgattcaatgatggtgagagttaattggtggttttcttt
tctgcatccttccctgatttagcctatccatgccacagtaagaatctcct
tttgcctcagtttccctttctagtttcctttgctacacactgtgaaaaca
ttggccagagctgccagctgaactacttgtaggccacctgctgttaggac
catcctaagagtaaccaaaagacttgaaaattgaagattggggttatgta
ctatctgggaactgctattaccttggaattaaaatgggaattagaggaaa
atgatgctatcctactagttattgattagtaagttgtttctctttatcga
tataggatatggaagaaaataatttctcaaggtataatacaactgttatt
ttagtataggaccaggaaaagtaatagtttagggattctgaggagatggc
tcatataaggatttgaattaagatacccagcacccatgtaaaaatctgga
cgtggtgtcagacacctacaacttcagtgctcgtgaccaaatataggtgg
gtctctgaagcttgctggcagccaacatagtggaatcagtgagctcctgg
ctcaaaaacaaggttgagacaattgagaaagatacctggccccatatcca
tatctacacatgtacatacaaacacaatacacaaatgtacatatcacaca
tgaatgcacacacacacacaaagaagtaatgattttatataaattatact
tcccttacaagtgactagtattaatgtataattttgtaggtttagccaag
gacaatgtacaatctgtgtgcaagaaacaaaatactcatataccctgctt
ccacactgttggagaaacaatgatgggcagaaaaaaaggttttggttaaa
attgtgatgtatttatccaggttttccacctcacctattccactaaaatt
caagcaaccaaacaaaaacctctgagtgtatcctattaccatggagttaa
gaagttctaagtgggacacgcctatagatatcgtgtgccttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_106549185_106550251
seq2: B6Ng01-202N22.b_49_1116

seq1  GAATTCTCTCATTCTTGGGAAAGCTGCCAGACAATCACTACAGTTCACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCATTCTTGGGAAAGCTGCCAGACAATCACTACAGTTCACAT  50

seq1  AATGGGATCATTGAAGAATCTGCGGGTCAGACTTTTTTTTAACACACCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGATCATTGAAGAATCTGCGGGTCAGACTTTTTTTTAACACACCAC  100

seq1  AATGCTTTCTGTTGTTTCCTGCATAACTCAGTGCTACACAGACATTTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTTTCTGTTGTTTCCTGCATAACTCAGTGCTACACAGACATTTTGA  150

seq1  TATTAGCAAATCAAAAATTCATTTAAATATGAATTTAACAGTGATTTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGCAAATCAAAAATTCATTTAAATATGAATTTAACAGTGATTTTTA  200

seq1  AAACAACCACTTGGAAACCAAAGGAACAGATCAAAACCCTAACAAGTAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAACCACTTGGAAACCAAAGGAACAGATCAAAACCCTAACAAGTAGT  250

seq1  GACTTGAAACTGGAGAGAAAAAAAATCAGTGTTTGACAACTGGGAAAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGAAACTGGAGAGAAAAAAAATCAGTGTTTGACAACTGGGAAAGAT  300

seq1  GTGGGTCTGCATAGAAAGAACCTCCATTTGTCCTCAGAATATGAAGTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTCTGCATAGAAAGAACCTCCATTTGTCCTCAGAATATGAAGTATG  350

seq1  AAATCATCTCAGTATTAAATGGTTAGATTTTTTCATATCTAAACAAAGCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATCTCAGTATTAAATGGTTAGATTTTTTCATATCTAAACAAAGCG  400

seq1  CACAATGTCCATGGATCTGCATTTAGACAAGTTCTGAGTTTAGACAAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATGTCCATGGATCTGCATTTAGACAAGTTCTGAGTTTAGACAAGAG  450

seq1  CCTGCATCTGGGTGGAAATGAAGAATCATGGAGCAATAAATTATATTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCATCTGGGTGGAAATGAAGAATCATGGAGCAATAAATTATATTCCC  500

seq1  AAATTGTATAACCTCTCTTCTTTGGGGTTCCAAACAAATACAATGAGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTATAACCTCTCTTCTTTGGGGTTCCAAACAAATACAATGAGCAA  550

seq1  TTACATGCCCATCAGACACGATAAGAGCAGACTACCAGAGATCAGAGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATGCCCATCAGACACGATAAGAGCAGACTACCAGAGATCAGAGATT  600

seq1  AACAATTTTTTGAGTAAAACCAGATATAGAAATTTATAAATGAAGAAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATTTTTTGAGTAAAACCAGATATAGAAATTTATAAATGAAGAAGGA  650

seq1  TGCAAAGAATAAAGGAGTTTAAAAAAATCCTAAACCATTCATCCATATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAGAATAAAGGAGTTTAAAAAAATCCTAAACCATTCATCCATATTT  700

seq1  GGTTCTTTCCATAGGGCATGCCAAGGTCTTTGAACAAAAAACTAAAATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTTTCCATAGGGCATGCCAAGGTCTTTGAACAAAAAACTAAAATAA  750

seq1  TGAAACCACATCTGCAGTGCAAGTACTTTATAATGTAAAGCAGAATTTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACCACATCTGCAGTGCAAGTACTTTATAATGTAAAGCAGAATTTTA  800

seq1  AAATGCCAACCTTAGAATTGAGACAGGAGGCTCATATTAAAAACCTACAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCCAACCTTAGAATTGAGACAGGAGGCTCATATTAAAAACCTACAC  850

seq1  AAAAGACCATGGGAAAATTTCAATGGTGTGTTAACTGTGGGAATTAATTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACCATGGGAAAATTTCAATGGTGTGTTAACTGTGGGAATTAATTG  900

seq1  TTATGCATTTTGCCAGGCCTAGCACTACATTGTCAGAGTTAAATTAATTA  950
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTATGCATTTTGCCAGGCCTAGCACTACATTGTCAGAGTTTAATTAATTA  950

seq1  TAAGAAAAGAAAATTTTAAAATGTTTTC-TTTATGTATGTAATTT-GGAG  998
      |||||||||||||||||||||||||||| |||||||||||||||| ||||
seq2  TAAGAAAAGAAAATTTTAAAATGTTTTCTTTTATGTATGTAATTTGGGAG  1000

seq1  GAAAGAGA-TTAAAAATTCCTGTGGATCAGATATACAATCATTTCAAACT  1047
      |||||||| |||||||||||||||||||||||||||||||||||| ||||
seq2  GAAAGAGATTTAAAAATTCCTGTGGATCAGATATACAATCATTTC-AACT  1049

seq1  AAATTTTCTGGACACTCTAC  1067
      || |||||| ||||||||||
seq2  AATTTTTCT-GACACTCTAC  1068


seq1: chr1_106691317_106692455
seq2: B6Ng01-202N22.g_69_1211 (reverse)

seq1  TAAAAGCACA-GATATCTATTAGCTGTGTCCAATTTAGAACTTCTT-ACT  48
      |||| ||||| |||||||| |||  |||||| | |||||||||||| |||
seq2  TAAAGGCACACGATATCTA-TAGGCGTGTCCCACTTAGAACTTCTTAACT  49

seq1  TCATTGTATAGAGAATAACACTCAGAGGTTTTTGTTTGGTTGCTTGAATT  98
       ||| ||| | || || |||||||||||||||||||||||||||||||||
seq2  CCATGGTA-ATAGGAT-ACACTCAGAGGTTTTTGTTTGGTTGCTTGAATT  97

seq1  TTTAGGTGATA-GTGAGGT-GAAAACCT-GATAAATACAATCACCAATTT  145
      ||   |  ||| ||||||| |||||||| ||||||||| |||| ||||||
seq2  TTAGTGGAATAGGTGAGGTGGAAAACCTGGATAAATAC-ATCA-CAATTT  145

seq1  TAACCAAAACCTTTTTTTCTG-CCATCATTGTTTCTCC-ACAGTGT-GAA  192
      ||||||||||||||||||||| |||||||||||||||| ||||||| |||
seq2  TAACCAAAACCTTTTTTTCTGCCCATCATTGTTTCTCCAACAGTGTGGAA  195

seq1  GCAGGGTATATGAGTATTTTGTTTCTTGCACACAGATTGTACATTGTCCT  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGTATATGAGTATTTTGTTTCTTGCACACAGATTGTACATTGTCCT  245

seq1  TGGCTAAACCTAC-AAATTATACATTAATACTAGTCACTTGTAAGGGAAG  291
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGGCTAAACCTACAAAATTATACATTAATACTAGTCACTTGTAAGGGAAG  295

seq1  TATAATTTATATAAAATCATTACTTCTTTGTGTGTGTGTGTGCATTCATG  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTTATATAAAATCATTACTTCTTTGTGTGTGTGTGTGCATTCATG  345

seq1  TGTGATATGTACATTTGTGTATTGTGTTTGTATGTACATGTGTAGATATG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATATGTACATTTGTGTATTGTGTTTGTATGTACATGTGTAGATATG  395

seq1  GATATGGGGCCAGGTATCTTTCTCAATTGTCTCAACCTTGTTTTTGAGCC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGGGGCCAGGTATCTTTCTCAATTGTCTCAACCTTGTTTTTGAGCC  445

seq1  AGGAGCTCACTGATTCCACTATGTTGGCTGCCAGCAAGCTTCAGAGACCC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCTCACTGATTCCACTATGTTGGCTGCCAGCAAGCTTCAGAGACCC  495

seq1  ACCTATATTTGGTCACGAGCACTGAAGTTGTAGGTGTCTGACACCACGTC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATATTTGGTCACGAGCACTGAAGTTGTAGGTGTCTGACACCACGTC  545

seq1  CAGATTTTTACATGGGTGCTGGGTATCTTAATTCAAATCCTTATATGAGC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTTTTACATGGGTGCTGGGTATCTTAATTCAAATCCTTATATGAGC  595

seq1  CATCTCCTCAGAATCCCTAAACTATTACTTTTCCTGGTCCTATACTAAAA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCCTCAGAATCCCTAAACTATTACTTTTCCTGGTCCTATACTAAAA  645

seq1  TAACAGTTGTATTATACCTTGAGAAATTATTTTCTTCCATATCCTATATC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGTTGTATTATACCTTGAGAAATTATTTTCTTCCATATCCTATATC  695

seq1  GATAAAGAGAAACAACTTACTAATCAATAACTAGTAGGATAGCATCATTT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAGAGAAACAACTTACTAATCAATAACTAGTAGGATAGCATCATTT  745

seq1  TCCTCTAATTCCCATTTTAATTCCAAGGTAATAGCAGTTCCCAGATAGTA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTAATTCCCATTTTAATTCCAAGGTAATAGCAGTTCCCAGATAGTA  795

seq1  CATAACCCCAATCTTCAATTTTCAAGTCTTTTGGTTACTCTTAGGATGGT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACCCCAATCTTCAATTTTCAAGTCTTTTGGTTACTCTTAGGATGGT  845

seq1  CCTAACAGCAGGTGGCCTACAAGTAGTTCAGCTGGCAGCTCTGGCCAATG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACAGCAGGTGGCCTACAAGTAGTTCAGCTGGCAGCTCTGGCCAATG  895

seq1  TTTTCACAGTGTGTAGCAAAGGAAACTAGAAAGGGAAACTGAGGCAAAAG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACAGTGTGTAGCAAAGGAAACTAGAAAGGGAAACTGAGGCAAAAG  945

seq1  GAGATTCTTACTGTGGCATGGATAGGCTAAATCAGGGAAGGATGCAGAAA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTCTTACTGTGGCATGGATAGGCTAAATCAGGGAAGGATGCAGAAA  995

seq1  AGAAAACCACCAATTAACTCTCACCATCATTGAATCATCTGCACACAAAT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACCACCAATTAACTCTCACCATCATTGAATCATCTGCACACAAAT  1045

seq1  GTCAACAATCTGACTTCTGTGGCCATGGCCTGGAAGTGTTGGCTTTAGAG  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAACAATCTGACTTCTGTGGCCATGGCCTGGAAGTGTTGGCTTTAGAG  1095

seq1  AAGTCCTGAATCTTGCTTTAGTAGACACTTAGAAATTTACCTGAATTC  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCTGAATCTTGCTTTAGTAGACACTTAGAAATTTACCTGAATTC  1143


| Home | SequenceCutter | Blast | Download |