BAC Information

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BAC

Clone NameB6Ng01-203C09
Chromosome1 (Build37)
Map Location 142,083,902 - 142,201,414
singlet/doubletdoublet
Overlap geneKcnt2
Upstream geneCrb1, Zbtb41, Aspm, F13b, Cfhr1, EG624286, EG214403, BC026782, LOC545399, EG545367, Cfh
Downstream geneEG226472
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-203C09.bB6Ng01-203C09.g
ACCGA023443GA023444
length1,1341,178
definitionB6Ng01-203C09.b B6Ng01-203C09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(142,083,902 - 142,085,041)(142,200,252 - 142,201,414)
sequence
gaattccacaatcacttttctttgcatatttaccagttatgtatctctat
gatagcctctatctgctgtaaaaagagaaagcttttttgatgaaggatga
gaactgaacttgtctctgggtatttaaggacaaatatttagaatatagtt
ggaagctgtattaatttagcaaaataggggtaataagttttctcctaaga
catttccagccatcattcctggctaggttttcaataacaggcagaaatcc
cctcctattgagtctgccttaataccagttaggtattgattactcttgtg
atgttagtggcactattgtagcatttagtgatgatatctttattgagcta
gttgttctgagtaacaattaattaaacattataaaaagtacaacagtacc
taaagacatgttgaagggaaaagtgttacgtagaaccaatgttttggaga
gaactgtcttagctctgatttttgaactaacagcagctacaagtacttat
ttgtaactaaatttaattttaagttaattagggagagagtagatggtagc
taacactcatgcatccaagagaataaatacctcatgaatgataatccaga
gcaaggaaagaaaatagtagagtagacatgaccaggagactgaaccatga
gaggagagataggaagagagcaagagaggaggaccaagagcattaagaga
gagccaagagccaagagatggctaaaagcatgcatgactgaaatgattgg
gttatacatgaatgtgaagcagaaggaatagaagccaataagctggagtt
tagggtaggaggcaaagtgagaagagctgaggggagccacaaatattgag
ttagcctagaggccagcatgtgctttggtatgctaaaaggcaccacagtt
atccatttgtcttcagttgttttggtcatgacattgaaattaagtagcaa
attaagaaagaaaaatttagaaatctgctacatcactcagtagtgacagg
cattacaggcctgaaaacctggatgcagtcactaggcagggagtttcaga
aaactttgccacctggaaccttgggcatcccactcacaccctgtccccgc
ttagttggggtataagatctgtgctctctttcag

gaattccctataaattgtacacttgataggcttctccccacacagtgtga
catggactttgtcttcgtacttgttcttgggttctttttaaaccattctt
gtaagctgtcattccgtaaaacaggttatcattcactgctccagtcctgt
ggaaccacttcaagctcttgaaggacattgcaggacagactttaatctat
tttgaggcctgttgtgtgatgaagaagatttgagggctctatgttagtca
ttaagttccagagaactaattgagatagaaaagtaagggtgctgaagaaa
tgtctgtaataatctgggtaatcaaacttcacacacttcttgtcccctaa
gtcactgatctttacaaacttaccatggtctctggggtgtcatgatatga
tagcaatctgctctgaagcctcaaaaataactgagtaataaaacttcaac
ttctgcattttttcaaatacttcttacacattaagaattttaagtattta
gcttgcacttttttttttttttttttttactttttcaaatatatgtacgg
gtataaatacatttgagcaataatttttggactgaataagagctattgtt
tctgcattttttcttagttcttgttttgttttagttcttcctttggaaat
aaatattaggagaatttggatttgagactaaacaaaaacctggaaattag
ttcaggtatgacaacgtaagtgaaaaataattgaattctgattatgaact
tccttagtagtggattattgtgtgatgctttcggatgttaattctgaaaa
tctaatctaagaaagaaaaaccttatataatttaaaatgatggctaaaat
cattttaacaagtaaacaagtaaaataacatctaaaatgttttatgatga
taacaatatcttaaattaaatgatagtactgttaacagaatcatctgaag
aatctcgatcatttagaaataatctaagaagatggttcttctgaaaacat
taatttttgattgtgctaattcatggaacaaatgccgtgccactgaaggg
tgaatgccattcctactgaataaatgggaatagatgagccagcaacatgc
attccaacattgtttattacattttcatggtgaatgtgagacctgctact
ccaatacctgtttggagaagccaattat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_142083902_142085041
seq2: B6Ng01-203C09.b_48_1181

seq1  GAATTCCACAATCACTTTTCTTTGCATATTTACCAGTTATGTATCTCTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAATCACTTTTCTTTGCATATTTACCAGTTATGTATCTCTAT  50

seq1  GATAGCCTCTATCTGCTGTAAAAAGAGAAAGCTTTTTTGATGAAGGATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGCCTCTATCTGCTGTAAAAAGAGAAAGCTTTTTTGATGAAGGATGA  100

seq1  GAACTGAACTTGTCTCTGGGTATTTAAGGACAAATATTTAGAATATAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGAACTTGTCTCTGGGTATTTAAGGACAAATATTTAGAATATAGTT  150

seq1  GGAAGCTGTATTAATTTAGCAAAATAGGGGTAATAAGTTTTCTCCTAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCTGTATTAATTTAGCAAAATAGGGGTAATAAGTTTTCTCCTAAGA  200

seq1  CATTTCCAGCCATCATTCCTGGCTAGGTTTTCAATAACAGGCAGAAATCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCCAGCCATCATTCCTGGCTAGGTTTTCAATAACAGGCAGAAATCC  250

seq1  CCTCCTATTGAGTCTGCCTTAATACCAGTTAGGTATTGATTACTCTTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTATTGAGTCTGCCTTAATACCAGTTAGGTATTGATTACTCTTGTG  300

seq1  ATGTTAGTGGCACTATTGTAGCATTTAGTGATGATATCTTTATTGAGCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAGTGGCACTATTGTAGCATTTAGTGATGATATCTTTATTGAGCTA  350

seq1  GTTGTTCTGAGTAACAATTAATTAAACATTATAAAAAGTACAACAGTACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTCTGAGTAACAATTAATTAAACATTATAAAAAGTACAACAGTACC  400

seq1  TAAAGACATGTTGAAGGGAAAAGTGTTACGTAGAACCAATGTTTTGGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGACATGTTGAAGGGAAAAGTGTTACGTAGAACCAATGTTTTGGAGA  450

seq1  GAACTGTCTTAGCTCTGATTTTTGAACTAACAGCAGCTACAAGTACTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGTCTTAGCTCTGATTTTTGAACTAACAGCAGCTACAAGTACTTAT  500

seq1  TTGTAACTAAATTTAATTTTAAGTTAATTAGGGAGAGAGTAGATGGTAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAACTAAATTTAATTTTAAGTTAATTAGGGAGAGAGTAGATGGTAGC  550

seq1  TAACACTCATGCATCCAAGAGAATAAATACCTCATGAATGATAATCCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACTCATGCATCCAAGAGAATAAATACCTCATGAATGATAATCCAGA  600

seq1  GCAAGGAAAGAAAATAGTAGAGTAGACATGACCAGGAGACTGAACCATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGAAAGAAAATAGTAGAGTAGACATGACCAGGAGACTGAACCATGA  650

seq1  GAGGAGAGATAGGAAGAGAGCAAGAGAGGAGGACCAAGAGCATTAAGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGAGATAGGAAGAGAGCAAGAGAGGAGGACCAAGAGCATTAAGAGA  700

seq1  GAGCCAAGAGCCAAGAGATGGCTAAAAGCATGCATGACTGAAATGATTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAAGAGCCAAGAGATGGCTAAAAGCATGCATGACTGAAATGATTGG  750

seq1  GTTATACATGAATGTGAAGCAGAAGGAATAGAAGCCAATAAGCTGGAGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATACATGAATGTGAAGCAGAAGGAATAGAAGCCAATAAGCTGGAGTT  800

seq1  TAGGGTAGGAGGCAAAGTGAGAAGAGCTGAGGGGAGCCACAAATATTGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTAGGAGGCAAAGTGAGAAGAGCTGAGGGGAGCCACAAATATTGAG  850

seq1  TTAGCCTAGAGGCCAGCATGTGCTTTGGTATGCTAAAAGGCACCACAGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCCTAGAGGCCAGCATGTGCTTTGGTATGCTAAAAGGCACCACAGTT  900

seq1  ATCCATTTGTCTTCAGTTGTTTTGGTCATGACATTGAAATTAAGTAGCAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATTTGTCTTCAGTTGTTTTGGTCATGACATTGAAATTAAGTAGCAA  950

seq1  ATTAAGAAAGAAAAATTTAGAAATCTGCTACATCCACTCCAGTAGTGACA  1000
      ||||||||||||||||||||||||||||||||| |||| |||||||||||
seq2  ATTAAGAAAGAAAAATTTAGAAATCTGCTACAT-CACT-CAGTAGTGACA  998

seq1  GGCATTACAGGCCTGAAAACCTGGATGCAGTCACTAGGCAGGGAGTTTCA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GGCATTACAGGCCTGAAAACCTGGATGCAGTCACTAGGCAGGGAGTTTC-  1047

seq1  AGAAAACTTTGCCACCTGGAACCTTGGCATTCCCACTCACACCCTGTCCC  1100
      |||||||||||||||||||||||||||   ||||||||||||||||||||
seq2  AGAAAACTTTGCCACCTGGAACCTTGGGCATCCCACTCACACCCTGTCCC  1097

seq1  CGCTTTAGTCTGGTGTAT-AGATTCCTGTGCTCTCTTTCAG  1140
      ||| ||||| ||| |||| ||||  ||||||||||||||||
seq2  CGC-TTAGT-TGGGGTATAAGAT--CTGTGCTCTCTTTCAG  1134


seq1: chr1_142200252_142201414
seq2: B6Ng01-203C09.g_63_1240 (reverse)

seq1  ATAA-TGGCTTCCCACAAACAGGTATTGAAAGTAGCAG--CTCACA-TCA  46
      |||| ||||||| | |||||||||||||  ||||||||  |||||| |||
seq2  ATAATTGGCTTCTC-CAAACAGGTATTG-GAGTAGCAGGTCTCACATTCA  48

seq1  CATTGAAATATGTAATAAACAATGTT-GAATGCATGTTGCT-GCTCATCT  94
      |  ||||| ||||||||||||||||| |||||||||||||| ||||||||
seq2  CCATGAAA-ATGTAATAAACAATGTTGGAATGCATGTTGCTGGCTCATCT  97

seq1  AT--CCATTTA-TCAGTAGGGAATGGCA-TCACCC-TCAGTGGCACGGCA  139
      ||  ||||||| |||||| ||||||||| |||||| ||||||||||||||
seq2  ATTCCCATTTATTCAGTA-GGAATGGCATTCACCCTTCAGTGGCACGGCA  146

seq1  -TTGTTCCATGAATTAGCACAATCAAAA--TAATG-TCTCAG-AGAACCA  184
       |||||||||||||||||||||||||||  ||||| | |||| |||||||
seq2  TTTGTTCCATGAATTAGCACAATCAAAAATTAATGTTTTCAGAAGAACCA  196

seq1  TC-TCTTAGATTA-TTCTAAATGATCGAGATTC-TCAGATGATTCTGTTA  231
      || |||||||||| ||||||||||||||||||| ||||||||||||||||
seq2  TCTTCTTAGATTATTTCTAAATGATCGAGATTCTTCAGATGATTCTGTTA  246

seq1  ACAGTACTATCATTTAATTTAAGATATTGTTATCATCATAAAACATTTTA  281
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTACTATCATTTAATTTAAGATATTGTTATCATCATAAAACATTTTA  296

seq1  GATGTTATTTTACTTGTTTACTTGTTAAAATGATTTTAGCCATCATTTTA  331
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTATTTTACTTGTTTACTTGTTAAAATGATTTTAGCCATCATTTTA  346

seq1  AATTATATAAGGTTTTTCTTTCTTAGATTAGATTTTCAGAATTAACATCC  381
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATATAAGGTTTTTCTTTCTTAGATTAGATTTTCAGAATTAACATCC  396

seq1  GAAAGCATCACACAATAATCCACTACTAAGGAAGTTCATAATCAGAATTC  431
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCATCACACAATAATCCACTACTAAGGAAGTTCATAATCAGAATTC  446

seq1  AATTATTTTTCACTTACGTTGTCATACCTGAACTAATTTCCAGGTTTTTG  481
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTTTTCACTTACGTTGTCATACCTGAACTAATTTCCAGGTTTTTG  496

seq1  TTTAGTCTCAAATCCAAATTCTCCTAATATTTATTTCCAAAGGAAGAACT  531
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTCTCAAATCCAAATTCTCCTAATATTTATTTCCAAAGGAAGAACT  546

seq1  AAAACAAAACAAGAACTAAGAAAAAATGCAGAAACAATAGCTCTTATTCA  581
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAACAAGAACTAAGAAAAAATGCAGAAACAATAGCTCTTATTCA  596

seq1  GTCCAAAAATTATTGCTCAAATGTATTTATACCCGTACATATATTTGAAA  631
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAAAAATTATTGCTCAAATGTATTTATACCCGTACATATATTTGAAA  646

seq1  AAGTAAAAAAAAAAAAAAAAAAAAGTGCAAGCTAAATACTTAAAATTCTT  681
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAAAAAAAAAAAAAAAAAAAGTGCAAGCTAAATACTTAAAATTCTT  696

seq1  AATGTGTAAGAAGTATTTGAAAAAATGCAGAAGTTGAAGTTTTATTACTC  731
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGTAAGAAGTATTTGAAAAAATGCAGAAGTTGAAGTTTTATTACTC  746

seq1  AGTTATTTTTGAGGCTTCAGAGCAGATTGCTATCATATCATGACACCCCA  781
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATTTTTGAGGCTTCAGAGCAGATTGCTATCATATCATGACACCCCA  796

seq1  GAGACCATGGTAAGTTTGTAAAGATCAGTGACTTAGGGGACAAGAAGTGT  831
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCATGGTAAGTTTGTAAAGATCAGTGACTTAGGGGACAAGAAGTGT  846

seq1  GTGAAGTTTGATTACCCAGATTATTACAGACATTTCTTCAGCACCCTTAC  881
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGTTTGATTACCCAGATTATTACAGACATTTCTTCAGCACCCTTAC  896

seq1  TTTTCTATCTCAATTAGTTCTCTGGAACTTAATGACTAACATAGAGCCCT  931
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTATCTCAATTAGTTCTCTGGAACTTAATGACTAACATAGAGCCCT  946

seq1  CAAATCTTCTTCATCACACAACAGGCCTCAAAATAGATTAAAGTCTGTCC  981
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCTTCTTCATCACACAACAGGCCTCAAAATAGATTAAAGTCTGTCC  996

seq1  TGCAATGTCCTTCAAGAGCTTGAAGTGGTTCCACAGGACTGGAGCAGTGA  1031
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATGTCCTTCAAGAGCTTGAAGTGGTTCCACAGGACTGGAGCAGTGA  1046

seq1  ATGATAACCTGTTTTACGGAATGACAGCTTACAAGAATGGTTTAAAAAGA  1081
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAACCTGTTTTACGGAATGACAGCTTACAAGAATGGTTTAAAAAGA  1096

seq1  ACCCAAGAACAAGTACGAAGACAAAGTCCATGTCACACTGTGTGGGGAGA  1131
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAGAACAAGTACGAAGACAAAGTCCATGTCACACTGTGTGGGGAGA  1146

seq1  AGCCTATCAAGTGTACAATTTATAGGGAATTC  1163
      ||||||||||||||||||||||||||||||||
seq2  AGCCTATCAAGTGTACAATTTATAGGGAATTC  1178


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