BAC Information

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BAC

Clone NameB6Ng01-203F06
Chromosome1 (Build37)
Map Location 67,027,727 - 67,157,790
singlet/doubletdoublet
Overlap geneLancl1
Upstream geneLOC667781, EG667786, Mtap2, C030018G13Rik, Rpe, 1110028C15Rik, Acadl, Myl1, LOC100043192
Downstream geneCps1, Kif22-ps, Erbb4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-203F06.bB6Ng01-203F06.g
ACCGA023575GA023576
length9491,017
definitionB6Ng01-203F06.b B6Ng01-203F06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,156,843 - 67,157,790)(67,027,727 - 67,028,763)
sequence
gaattcattcccttgctgttatttagcctgagttatctaacatagatgat
agataggtaggtaggtagatagatagatagatagatagatagatagatag
atagatagatagatagtaggtaagaaggtatgtagacagatagatagatt
tcacctttccttgagaaaactgagatcatgagatatcaatgatcatggag
aaatactctgtatcctaaccatgatctccccagatctgtgtgtaaaggag
gaacggctaccgttgtacatttcagaatggagatagcggtgtcatagata
taatataaagtcagtccatagatgcttttttttgactgatagtgagtagg
caaacacattatactagtcaacaagtagaggttagctttctcgtagcttc
attctcctcttagccaagtcaattagtgagcatagagcctagcttttcta
aaagctgaacaaatctactaggcgacaattgcagtaatacaaaagtttca
gagataatgtctatcacatcctgtgatctaaggagtaaacataatttata
tagaaaatgggcaatgggtaacaaagccattactgttactatacctgaaa
aatctggaattgactctggagctatatgatgggcagtagttagaagagtc
tagaagagaagactagaaaaggcatacagggattctggtggaaggcacag
ataaatggaagccttggaactgagatggctcatcaaaaagaggatcctat
tgaaaatgaggaaaaagctagccctacatagttccataccaaataacttg
actgcattggactcatgcccgaagactctggaagccaaacttaaaagcaa
tagagtactttttccactagaaattagcaaccaatcactgggtataacat
tgggtattattaccacgctttaattagactagtagttgagcttccaaga
gaattctccagtccagaggttgccctttccccagagactcttctgtatat
aattcaggcattttggttatccactcctcttttgctccttttgtatcttt
ggcctcctggctgctgttcttggttcttccctctcacttcccttccccct
tccctcacaaggttcagggtcatgaccattatggaatctcatggatgtat
ctgcctctggctatgctctccatatatttgtaataaattttctccctaac
cataacctgggaagtctttttgtttccttcctctttctttctttctttct
ttctttctttctttctttctttctttctttctttctttctttctttcttt
ctttctttctttctttttctcctctcctctcctctcctctcctcccctcc
cctcccctcctcctcctcctcctcctctcctcctcttcgtcctccttctt
cttcctctctctctctctctctctctctctctctccattcaattatattt
tgagagcagggtgtatgaagggaagaaagagaaggggtaaaatcttcttc
ctccttctatccttcctcctcctcttctttaaatatttcccctttcccat
ctcatttcttttcttactttctttgatgttatggtaagaaattagcattt
cctgctgctttagcatttgtctctgcattcatttgagccaaactattaaa
aaaaacccagcaaaataaaaattttacctgggattccgtgaaaatgatga
ggatgagtaaggccccttatggagagagctggcactgtggtgagggacag
atgagttccagctcagtaaaagtaaactagaaaaaaaaatagcttcttat
ctttgttgaaatctgttttcatgtttctgtttgttgttgtgctctttagt
tgctgagggcaaggacatggatttgttatagaaactatagagttttattt
cttgtgttattcatgacagataagtcaagttgagcatgatgactcacttc
tataattctgacagttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_67156843_67157790
seq2: B6Ng01-203F06.b_47_995 (reverse)

seq1  TCTTGG-AGCTC-ACTACTAGTCTAATT-AAGCGTGGTAAATAATAACCA  47
      |||||| ||||| ||||||||||||||| ||||||||| ||||||| |||
seq2  TCTTGGAAGCTCAACTACTAGTCTAATTAAAGCGTGGT-AATAATACCCA  49

seq1  TGTTTATACCCAAGTGATTGGTTGCTAA-TTCTAGTGGAAAAAGTACTCT  96
         |||||||| |||||||||||||||| |||||||||||||||||||||
seq2  ATGTTATACCC-AGTGATTGGTTGCTAATTTCTAGTGGAAAAAGTACTCT  98

seq1  ATTGCTTTTAAGTTTGGCCTTCCAGAGTCTTCGGGCATGAGTCCAATGCA  146
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ATTGCTTTTAAGTTTGG-CTTCCAGAGTCTTCGGGCATGAGTCCAATGCA  147

seq1  GTCAAGTTATTTGGTATGGAACTATGTAGGGCTAGCTTTTTCCTCATTTT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGTTATTTGGTATGGAACTATGTAGGGCTAGCTTTTTCCTCATTTT  197

seq1  CAATAGGATCCTCTTTTTGATGAGCCATCTCAGTTCCAAGGCTTCCATTT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGGATCCTCTTTTTGATGAGCCATCTCAGTTCCAAGGCTTCCATTT  247

seq1  ATCTGTGCCTTCCACCAGAATCCCTGTATGCCTTTTCTAGTCTTCTCTTC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTGCCTTCCACCAGAATCCCTGTATGCCTTTTCTAGTCTTCTCTTC  297

seq1  TAGACTCTTCTAACTACTGCCCATCATATAGCTCCAGAGTCAATTCCAGA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTCTTCTAACTACTGCCCATCATATAGCTCCAGAGTCAATTCCAGA  347

seq1  TTTTTCAGGTATAGTAACAGTAATGGCTTTGTTACCCATTGCCCATTTTC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCAGGTATAGTAACAGTAATGGCTTTGTTACCCATTGCCCATTTTC  397

seq1  TATATAAATTATGTTTACTCCTTAGATCACAGGATGTGATAGACATTATC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAAATTATGTTTACTCCTTAGATCACAGGATGTGATAGACATTATC  447

seq1  TCTGAAACTTTTGTATTACTGCAATTGTCGCCTAGTAGATTTGTTCAGCT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAACTTTTGTATTACTGCAATTGTCGCCTAGTAGATTTGTTCAGCT  497

seq1  TTTAGAAAAGCTAGGCTCTATGCTCACTAATTGACTTGGCTAAGAGGAGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAAAAGCTAGGCTCTATGCTCACTAATTGACTTGGCTAAGAGGAGA  547

seq1  ATGAAGCTACGAGAAAGCTAACCTCTACTTGTTGACTAGTATAATGTGTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGCTACGAGAAAGCTAACCTCTACTTGTTGACTAGTATAATGTGTT  597

seq1  TGCCTACTCACTATCAGTCAAAAAAAAGCATCTATGGACTGACTTTATAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTACTCACTATCAGTCAAAAAAAAGCATCTATGGACTGACTTTATAT  647

seq1  TATATCTATGACACCGCTATCTCCATTCTGAAATGTACAACGGTAGCCGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCTATGACACCGCTATCTCCATTCTGAAATGTACAACGGTAGCCGT  697

seq1  TCCTCCTTTACACACAGATCTGGGGAGATCATGGTTAGGATACAGAGTAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTTTACACACAGATCTGGGGAGATCATGGTTAGGATACAGAGTAT  747

seq1  TTCTCCATGATCATTGATATCTCATGATCTCAGTTTTCTCAAGGAAAGGT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCATGATCATTGATATCTCATGATCTCAGTTTTCTCAAGGAAAGGT  797

seq1  GAAATCTATCTATCTGTCTACATACCTTCTTACCTACTATCTATCTATCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCTATCTATCTGTCTACATACCTTCTTACCTACTATCTATCTATCT  847

seq1  ATCTATCTATCTATCTATCTATCTATCTATCTATCTACCTACCTACCTAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATCTATCTATCTATCTATCTATCTATCTATCTACCTACCTACCTAT  897

seq1  CTATCATCTATGTTAGATAACTCAGGCTAAATAACAGCAAGGGAATGAAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCATCTATGTTAGATAACTCAGGCTAAATAACAGCAAGGGAATGAAT  947

seq1  TC  948
      ||
seq2  TC  949

seq1: chr1_67027727_67028763
seq2: B6Ng01-203F06.g_62_1078

seq1  GAATTCTCCAGTCCAGAGGTTGCCCTTTCCCCAGAGACTCTTCTGTATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCAGTCCAGAGGTTGCCCTTTCCCCAGAGACTCTTCTGTATAT  50

seq1  AATTCAGGCATTTTGGTTATCCACTCCTCTTTTGCTCCTTTTGTATCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGGCATTTTGGTTATCCACTCCTCTTTTGCTCCTTTTGTATCTTT  100

seq1  GGCCTCCTGGCTGCTGTTCTTGGTTCTTCCCTCTCACTTCCCTTCCCCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCCTGGCTGCTGTTCTTGGTTCTTCCCTCTCACTTCCCTTCCCCCT  150

seq1  TCCCTCACAAGGTTCAGGGTCATGACCATTATGGAATCTCATGGATGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCACAAGGTTCAGGGTCATGACCATTATGGAATCTCATGGATGTAT  200

seq1  CTGCCTCTGGCTATGCTCTCCATATATTTGTAATAAATTTTCTCCCTAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCTGGCTATGCTCTCCATATATTTGTAATAAATTTTCTCCCTAAC  250

seq1  CATAACCTGGGAAGTCTTTTTGTTTCCTTCCTCTTTCTTTCTTTCTTTCT  300
      |||||||||||||||||||||||||||||||            |||||||
seq2  CATAACCTGGGAAGTCTTTTTGTTTCCTTCC------------TCTTTCT  288

seq1  TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT  338

seq1  CTTTCTTTCTTTCTTTCTTTCTTTCTTTTTCTCCTCTCCTCTCCTCTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTCTTTCTTTCTTTCTTTCTTTTTCTCCTCTCCTCTCCTCTCCT  388

seq1  CTCCTCCCCTCCCCTCCCCTCCTCCTCCTCCTCCTCCTCTCCTCCTCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCCCTCCCCTCCCCTCCTCCTCCTCCTCCTCCTCTCCTCCTCTTC  438

seq1  GTCCTCCTTCTTCTTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCCTTCTTCTTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCAT  488

seq1  TCAATTATATTTTGAGAGCAGGGTGTATGAAGGGAAGAAAGAGAAGGGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTATATTTTGAGAGCAGGGTGTATGAAGGGAAGAAAGAGAAGGGGT  538

seq1  AAAATCTTCTTCCTCCTTCTATCCTTCCTCCTCCTCTTCTTTAAATATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTTCTTCCTCCTTCTATCCTTCCTCCTCCTCTTCTTTAAATATTT  588

seq1  CCCCTTTCCCATCTCATTTCTTTTCTTACTTTCTTTGATGTTATGGTAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTTCCCATCTCATTTCTTTTCTTACTTTCTTTGATGTTATGGTAAG  638

seq1  AAATTAGCATTTCCTGCTGCTTTAGCATTTGTCTCTGCATTCATTTGAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGCATTTCCTGCTGCTTTAGCATTTGTCTCTGCATTCATTTGAGC  688

seq1  CAAACTATTAAAAAAAACCCAGCAAAATAAAAATTTTACCTGGGATTCCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTATTAAAAAAAACCCAGCAAAATAAAAATTTTACCTGGGATTCCG  738

seq1  TGAAAATGATGAGGATGAGTAAGGGCCCCTTATGGAGAGAGCTTGGCACT  800
      |||||||||||||||||||||| ||||||||||||||||||| |||||||
seq2  TGAAAATGATGAGGATGAGTAA-GGCCCCTTATGGAGAGAGC-TGGCACT  786

seq1  GTGGTGAGGGACAGATGAGTTCCAGCTCAGTAAAAGTAAACTAGAAAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGAGGGACAGATGAGTTCCAGCTCAGTAAAAGTAAACTAGAAAAAA  836

seq1  AAATAGCTTCTTATCTTTGTTGAAATCTGTTTTCATGTTTCTGTTTGTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGCTTCTTATCTTTGTTGAAATCTGTTTTCATGTTTCTGTTTGTTG  886

seq1  TTGTTGCTCTTTAAGTTGCTGAGGGCAAGGACATGGATTTGTTATAGAAA  950
      ||| |||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTG-TGCTCTTT-AGTTGCTGAGGGCAAGGACATGGATTTGTTATAGAAA  934

seq1  CTATAGGAGGTTTTAATTCTTGTTGTTATTCATTGACAGATAAAGTCAAG  1000
      ||||||   |||||| |||||| ||||||||| |||||||| ||||||||
seq2  CTATAG--AGTTTTATTTCTTG-TGTTATTCA-TGACAGAT-AAGTCAAG  979

seq1  TTGAGCATGATGACTCAC-TCTATAATCCTGACAGTTG  1037
      |||||||||||||||||| |||||||| ||||||||||
seq2  TTGAGCATGATGACTCACTTCTATAATTCTGACAGTTG  1017