BAC Information

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BAC

Clone NameB6Ng01-203N09
Chromosome1 (Build37)
Map Location 131,721,559 - 131,906,596
singlet/doubletdoublet
Overlap geneThsd7b
Upstream geneLOC100042732, LOC100042745, LOC100042740
Downstream geneDaf2, Cd55, Zp3r, C4bp, C4bp-ps1, Pfkfb2, Yod1, AA986860, Fcamr, Pigr, Faim3, Il24, Il20, Il19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-203N09.bB6Ng01-203N09.g
ACCGA023944GA023945
length1,1541,050
definitionB6Ng01-203N09.b B6Ng01-203N09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(131,905,447 - 131,906,596)(131,721,559 - 131,722,622)
sequence
gaattctcggtgatgggtgacagcacattcatagaaatatactaaatctc
catgaaaggctatggctacaatggtaacaacagtgcatatactcttggtc
atatacaaataataatgaatagctacagaatttgttttgtcagtaaaata
aagctttagatattgaaagatataaattcaatattaatctaaaacatagc
ttaaacttgaaagtaaatgtaagataacaatattcaagaaggtaagggag
tgttagggtggtcagatgggatttaatagagacttttctaaggaaaatta
ctttagtgttttgcttctacttggtagcctaggatccttaagcagcagga
aaacaaggacatttaccctgaacccagaacatgtcttgtgagagtccagg
atcattttatattagatatagttcttcaagaaaatactacaaccattttg
tttcctttgtaattagtacatagaaacaaagaaacttgaagagaaactgg
caataacagcagaattgtactccaaagaagatttagtagctgctgagctc
tcctatttcttattgctcttcatctgtggtattatcaggtacaaagatga
taatgttaaagaaattcaaggttcccaatcatcagagagtacaccaattg
ttcaagtcagcatactatattctatttaataaggctgtgaagtacactaa
taaatcttaagctatttctaagagcaaagattaaattggtaactttgtgt
taaccatagcttaaaatttaataataaaggcttttcatgtatctttgtgt
aatcaagtgtcaggaagacttatttctcttggggaaatgacacaccattg
cttatttattaattatattttatattcaagacttaatgcatcaactatta
tgactagttagatgattctatataaaataggtaaggtactatgaaatgca
gagatttaatctgggatatgttaatggaatcattttcaaatatggtggaa
gacaaatatccattgggggagtagctatctgttcccagtgttgctattgc
tttttatgaaaaggcacctgatcaaaatggaaagaatgaaaagctaaatt
aagacgtcaccacttcttatatagtctcagtatttctagaatgtttcaaa
cctg
gaattctaacccctgccctatcagacagatccatgacttcaggtcccttt
ggccttttttgggattaactcagcaatagacttagaagatgtgtacctta
accactatgtatgtttcagtccttcatgttcagtatttgcaataattata
gttctggaaatataaagatccgttgctttattttattgtgtttatgttgt
taacttgttcagttgatatatacttaaaactcatttatgtaattctcttc
tgatcacagaagaattaagaaagaaagaaagaaagaaagaaagaaagaaa
gaaagaaagaaagaaagaaagaaagaaagaaaaaaagagcaggcagaatt
accgcaatagcaaaatatcagtactttctccagagtagtgagaattctgg
ttctactgtataagatacactctgcttcatagagagtcagacatttttac
ccagttaattatgcttaatttgaataaagaaagaatacaatcccaatatt
gtgacagatgatactatagaagaaagaactatacattttcttttttattt
taaatcgctgcttaaagagataaacattttagtaatacaaaggggaaaaa
aaaggtcctgaaatttctcgaagtgcgacattatttatgaagtaatttta
attttactgtccacactcctttaaagctggcttaaaagaatccggatgtt
ttacttttggactgtacctcatttatcaaatgtcaagtgctcccttttat
cagagggacaacactgtagcactatgatggagatgaaacaggagatagag
gattacctttttgtgtctaagatgctcttgatgtcgtgaagtgcctgaac
tctttttcagtttactttcactgaataatgtttatgagaatgaagaaagg
gaggtctctaaccattatcaatctttttgttctttcttattagtttagac
ttctcacacacaggttacggatctgtttgcttgccttaaagatcttccaa
acttaggtgttttttctacttttaaaaagtgagggttggggaggtgggaa

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_131905447_131906596
seq2: B6Ng01-203N09.b_43_1196 (reverse)

seq1  CAGGTTTG-AACATCTAAGAAATACTGA---CATAATAGAAGTGGTTGAC  46
      |||||||| |||||   |||||||||||    |||  |||||||| ||||
seq2  CAGGTTTGAAACATTCTAGAAATACTGAGACTATATAAGAAGTGG-TGAC  49

seq1  GTTCTGTATTTAGCTTTTCATTCTTT-CATTTTGATCAGGTGCTTTTTAA  95
      | |||  ||||||||||||||||||| |||||||||||||||| |||| |
seq2  G-TCTTAATTTAGCTTTTCATTCTTTCCATTTTGATCAGGTGCCTTTTCA  98

seq1  T-AAAAGCAATAGCAACACTGGGAACAGATAGCTACT-CCCCAATGGATA  143
      | ||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TAAAAAGCAATAGCAACACTGGGAACAGATAGCTACTCCCCCAATGGATA  148

seq1  TTTTGTCTTCCACATTATTTGAAAATGATTCCATTAACATATCCCAGATT  193
       ||||||||||||  |||||||||||||||||||||||||||||||||||
seq2  -TTTGTCTTCCACCATATTTGAAAATGATTCCATTAACATATCCCAGATT  197

seq1  AAATCTCTGCATTTCATAGTACCTTACCTATTTTATATAGAATCATCTAA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTCTGCATTTCATAGTACCTTACCTATTTTATATAGAATCATCTAA  247

seq1  CTAGTCATAATAGTTGATGCATTAAGTCTTGAATATAAAATATAATTAAT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCATAATAGTTGATGCATTAAGTCTTGAATATAAAATATAATTAAT  297

seq1  AAATAAGCAATGGTGTGTCATTTCCCCAAGAGAAATAAGTCTTCCTGACA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGCAATGGTGTGTCATTTCCCCAAGAGAAATAAGTCTTCCTGACA  347

seq1  CTTGATTACACAAAGATACATGAAAAGCCTTTATTATTAAATTTTAAGCT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATTACACAAAGATACATGAAAAGCCTTTATTATTAAATTTTAAGCT  397

seq1  ATGGTTAACACAAAGTTACCAATTTAATCTTTGCTCTTAGAAATAGCTTA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTAACACAAAGTTACCAATTTAATCTTTGCTCTTAGAAATAGCTTA  447

seq1  AGATTTATTAGTGTACTTCACAGCCTTATTAAATAGAATATAGTATGCTG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTATTAGTGTACTTCACAGCCTTATTAAATAGAATATAGTATGCTG  497

seq1  ACTTGAACAATTGGTGTACTCTCTGATGATTGGGAACCTTGAATTTCTTT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAACAATTGGTGTACTCTCTGATGATTGGGAACCTTGAATTTCTTT  547

seq1  AACATTATCATCTTTGTACCTGATAATACCACAGATGAAGAGCAATAAGA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTATCATCTTTGTACCTGATAATACCACAGATGAAGAGCAATAAGA  597

seq1  AATAGGAGAGCTCAGCAGCTACTAAATCTTCTTTGGAGTACAATTCTGCT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGAGAGCTCAGCAGCTACTAAATCTTCTTTGGAGTACAATTCTGCT  647

seq1  GTTATTGCCAGTTTCTCTTCAAGTTTCTTTGTTTCTATGTACTAATTACA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTGCCAGTTTCTCTTCAAGTTTCTTTGTTTCTATGTACTAATTACA  697

seq1  AAGGAAACAAAATGGTTGTAGTATTTTCTTGAAGAACTATATCTAATATA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAACAAAATGGTTGTAGTATTTTCTTGAAGAACTATATCTAATATA  747

seq1  AAATGATCCTGGACTCTCACAAGACATGTTCTGGGTTCAGGGTAAATGTC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATCCTGGACTCTCACAAGACATGTTCTGGGTTCAGGGTAAATGTC  797

seq1  CTTGTTTTCCTGCTGCTTAAGGATCCTAGGCTACCAAGTAGAAGCAAAAC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTTTCCTGCTGCTTAAGGATCCTAGGCTACCAAGTAGAAGCAAAAC  847

seq1  ACTAAAGTAATTTTCCTTAGAAAAGTCTCTATTAAATCCCATCTGACCAC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAGTAATTTTCCTTAGAAAAGTCTCTATTAAATCCCATCTGACCAC  897

seq1  CCTAACACTCCCTTACCTTCTTGAATATTGTTATCTTACATTTACTTTCA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACACTCCCTTACCTTCTTGAATATTGTTATCTTACATTTACTTTCA  947

seq1  AGTTTAAGCTATGTTTTAGATTAATATTGAATTTATATCTTTCAATATCT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAAGCTATGTTTTAGATTAATATTGAATTTATATCTTTCAATATCT  997

seq1  AAAGCTTTATTTTACTGACAAAACAAATTCTGTAGCTATTCATTATTATT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTTTATTTTACTGACAAAACAAATTCTGTAGCTATTCATTATTATT  1047

seq1  TGTATATGACCAAGAGTATATGCACTGTTGTTACCATTGTAGCCATAGCC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATGACCAAGAGTATATGCACTGTTGTTACCATTGTAGCCATAGCC  1097

seq1  TTTCATGGAGATTTAGTATATTTCTATGAATGTGCTGTCACCCATCACCG  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGGAGATTTAGTATATTTCTATGAATGTGCTGTCACCCATCACCG  1147

seq1  AGAATTC  1150
      |||||||
seq2  AGAATTC  1154

seq1: chr1_131721559_131722622
seq2: B6Ng01-203N09.g_63_1112

seq1  GAATTCTAACCCCTGCCCTATCAGACAGATCCATGACTTCAGGTCCCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAACCCCTGCCCTATCAGACAGATCCATGACTTCAGGTCCCTTT  50

seq1  GGCCTTTTTTGGGATTAACTCAGCAATAGACTTAGAAGATGTGTACCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTTTTTGGGATTAACTCAGCAATAGACTTAGAAGATGTGTACCTTA  100

seq1  ACCACTATGTATGTTTCAGTCCTTCATGTTCAGTATTTGCAATAATTATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTATGTATGTTTCAGTCCTTCATGTTCAGTATTTGCAATAATTATA  150

seq1  GTTCTGGAAATATAAAGATCCGTTGCTTTATTTTATTGTGTTTATGTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGGAAATATAAAGATCCGTTGCTTTATTTTATTGTGTTTATGTTGT  200

seq1  TAACTTGTTCAGTTGATATATACTTAAAACTCATTTATGTAATTCTCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTGTTCAGTTGATATATACTTAAAACTCATTTATGTAATTCTCTTC  250

seq1  TGATCACAGAAGAATTAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA  300
      ||||||||||||||||    ||||||||||||||||||||||||||||||
seq2  TGATCACAGAAGAATT----AAGAAAGAAAGAAAGAAAGAAAGAAAGAAA  296

seq1  GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAAAAAGAGCAGGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAAAAAGAGCAGGCAG  346

seq1  AATTACCGCAATAGCAAAATATCAGTACTTTCTCCAGAGTAGTGAGAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACCGCAATAGCAAAATATCAGTACTTTCTCCAGAGTAGTGAGAATT  396

seq1  CTGGTTCTACTGTATAAGATACACTCTGCTTCATAGAGAGTCAGACATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTCTACTGTATAAGATACACTCTGCTTCATAGAGAGTCAGACATTT  446

seq1  TTACCCAGTTAATTATGCTTAATTTGAATAAAGAAAGAATACAATCCCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCAGTTAATTATGCTTAATTTGAATAAAGAAAGAATACAATCCCAA  496

seq1  TATTGTGACAGATGATACTATAGAAGAAAGAACTATACATTTTCTTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTGACAGATGATACTATAGAAGAAAGAACTATACATTTTCTTTTTT  546

seq1  ATTTTAAATCGCTGCTTAAAGAGATAAACATTTTAGTAATACAAAGGGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAATCGCTGCTTAAAGAGATAAACATTTTAGTAATACAAAGGGGA  596

seq1  AAAAAAAGGTCCTGAAATTTCTCGAAGTGCGACATTATTTATGAAGTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGGTCCTGAAATTTCTCGAAGTGCGACATTATTTATGAAGTAAT  646

seq1  TTTAATTTTACTGTCCACACTCCTTTAAAGCTGGCTTAAAAGAATCCGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTTTACTGTCCACACTCCTTTAAAGCTGGCTTAAAAGAATCCGGA  696

seq1  TGTTTTACTTTTGGACTGTACCTCATTTATCAAATGTCAAGTGCTCCCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTACTTTTGGACTGTACCTCATTTATCAAATGTCAAGTGCTCCCTT  746

seq1  TTATCAGAGGGACAACACTGTAGCACTATGATGGAGATGAAACAGGAGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAGAGGGACAACACTGTAGCACTATGATGGAGATGAAACAGGAGAT  796

seq1  AGAGGATTACCTTTTTGTGTCTAAGATGCTCTTGATGTCGTGAAGTGCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGATTACCTTTTTGTGTCTAAGATGCTCTTGATGTCGTGAAGTGCCT  846

seq1  GAACTCTTTTTCAGTTTACTTTCACTGAATAATGTTTATGAGAAATGAAG  900
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GAACTCTTTTTCAGTTTACTTTCACTGAATAATGTTTATGAG-AATGAAG  895

seq1  -AAGGGAGGTCTCTAACCATTATCAAATCTTTTTGTTCTTTCTTAATTAG  949
       ||||||||||||||||||||||| ||||||||||||||||||| |||||
seq2  AAAGGGAGGTCTCTAACCATTATC-AATCTTTTTGTTCTTTCTT-ATTAG  943

seq1  TTTAGACTTCTCACACAACAGGTTAAGGGAATCTGTTTGCTTTGCCTTTA  999
      |||||||||||||||| |||||||| ||  |||||||||| |||||||  
seq2  TTTAGACTTCTCACAC-ACAGGTTACGG--ATCTGTTTGC-TTGCCTT--  987

seq1  AAAGAATCTCCCAAAACTTAAGGTG-TTTTTCTACTTTTAAAAAAGTGAG  1048
      |||| |||| || |||||| ||||| ||||||||||||| ||||||||||
seq2  AAAG-ATCTTCC-AAACTT-AGGTGTTTTTTCTACTTTT-AAAAAGTGAG  1033

seq1  GG-TGGGGAGGTGGGAA  1064
      || ||||||||||||||
seq2  GGTTGGGGAGGTGGGAA  1050