BAC Information

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BAC

Clone NameB6Ng01-204H07
Chromosome1 (Build37)
Map Location 14,879,612 - 14,880,704
singlet/doubletsinglet
Overlap geneTrpa1
Upstream geneLOC100039869, Eya1, LOC665391, Msc, Smt3h2-ps4, EG665407
Downstream geneEG269105, LOC100039949, LOC100039959, Kcnb2, Ppia-ps1_109.1, Terf1, Gm106
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-204H07.bB6Ng01-204H07.g
ACCGA024398GA024399
length1,109985
definitionB6Ng01-204H07.b B6Ng01-204H07.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttgtaaaattgttcttgagataggtttatttatttatttattt
atttatttatttatttatgatgcatggatgttttgcctgcatttttgtct
gcaaaccaaatgtgtgcacggtgcccacaaatttcagaagactacactga
atccacttgaactggagttacagacaattgtgagccaccatgacggtact
gagaatcaactttgtgttttctgaaagagcagcagtgattgtaagcaatg
agccatctgtctaatcctctgtcacttcttcatgataaatcaaatatgca
agtttaattttctgctgaaagtttactggcataactatgggtaatttcaa
atggagaaaagggtattaagttagaacatgtaaattacaaaaataaatat
attggaaagatattctttcatatttttacagttcatagccatgaataaaa
ttcaattatttggtttaggcccacgtgtataaaaatcacccaaaatctaa
tggggtctagtttcataatcctgagaaaaaaaatcattgctcatcatgct
gtcctctctgatcctggaaggacaggatgtacgtacaacaggaactggac
cactgaacatcacctccataggacaggaattattttagagattcatcatt
cacataaaacctaagtaaatgtaaacactagaaatagcactaaatattgg
tggtaaaagaaactaaagatttaggggaaactcttacaaattaataatgc
aatatgaagccaatactcactaactactgtagattatagaaatatagtag
caccatttttcatattttcaaggaatttttataaaataaatttttagggt
atcaaaataagctttacatggtagtctttgacaggactttgtcttctgtg
gaaaggtatcatgcagaaatctaaaagaaccttttgagaaagaaaaccag
cctgaatatttgggggcagcagacttgtattatgagaaaaggagtttatt
tcacatttaaaaataatatacaagcattcccctgcttttcctttgctttc
atgattcttctcaggaatacaaagggaattgggcattttctttcttactg
ctaccctag
gaattcaaactgcaaaattcttgtgaggaacagtaagattcttattcagt
aaccatattgcagagaattcaacactggtgaacataaaaaagaaatagta
cacattcgccaggccccaccccgagatgactagctataggcaatcaatgt
ctacagagggcgagtatcagacttctccaggaaggagttcttgacaggtt
gtccaattccaagtggtcatcccaaaaccaaaatgtttatgtatatatga
acattgctaaatgggcccagcagatgtcatatattttcatatgtagatta
atgtgatagaaaaagagaccataaactttagaggaacagaaagaagagag
ggtgcttcacataaaaccagagacactgaaacttatagaggagaaagtgg
ggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaaca
gcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaa
actccaaagtttctgcaaggcaaaagacaccgtcaataagacaaagagac
caccaacagattgggaaaggatctttacctatcctaaatcagatagggga
ctaatatccaacatatataaagaactcaagaaggtggacttcagaaaatc
aaataaccccattaaaaaatggggctcagaactgaacatagaattctcac
ctgaggaataccgaaatggcagagaagcacctgaaaaaatgttcaacatc
cttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctca
cactcagtcagaatggctaagatcaaaaattcagtgacagcagatgctgg
gcgtgattgtggaagaaagaggaacactccctccattgttggtgggattg
caggcttgtacaaccactctggaaaatcagtcttggcggttccttagaaa
aactggtaatattagtactactggaaggatccagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_14879612_14880704
seq2: B6Ng01-204H07.b_42_1150

seq1  GAATTCTTTGTAAAATTGTTCTTGAGATAGGTTTATTTATTTATTTATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTAAAATTGTTCTTGAGATAGGTTTATTTATTTATTTATTT  50

seq1  ATTTATTTATTTATTTATGATGCATGGATGTTTTGCCTGCATTTTTGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTATTTATTTATGATGCATGGATGTTTTGCCTGCATTTTTGTCT  100

seq1  GCAAACCAAATGTGTGCACGGTGCCCACAAATTTCAGAAGACTACACTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACCAAATGTGTGCACGGTGCCCACAAATTTCAGAAGACTACACTGA  150

seq1  ATCCACTTGAACTGGAGTTACAGACAATTGTGAGCCACCATGACGGTACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACTTGAACTGGAGTTACAGACAATTGTGAGCCACCATGACGGTACT  200

seq1  GAGAATCAACTTTGTGTTTTCTGAAAGAGCAGCAGTGATTGTAAGCAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATCAACTTTGTGTTTTCTGAAAGAGCAGCAGTGATTGTAAGCAATG  250

seq1  AGCCATCTGTCTAATCCTCTGTCACTTCTTCATGATAAATCAAATATGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATCTGTCTAATCCTCTGTCACTTCTTCATGATAAATCAAATATGCA  300

seq1  AGTTTAATTTTCTGCTGAAAGTTTACTGGCATAACTATGGGTAATTTCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAATTTTCTGCTGAAAGTTTACTGGCATAACTATGGGTAATTTCAA  350

seq1  ATGGAGAAAAGGGTATTAAGTTAGAACATGTAAATTACAAAAATAAATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGAAAAGGGTATTAAGTTAGAACATGTAAATTACAAAAATAAATAT  400

seq1  ATTGGAAAGATATTCTTTCATATTTTTACAGTTCATAGCCATGAATAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAAAGATATTCTTTCATATTTTTACAGTTCATAGCCATGAATAAAA  450

seq1  TTCAATTATTTGGTTTAGGCCCACGTGTATAAAAATCACCCAAAATCTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTATTTGGTTTAGGCCCACGTGTATAAAAATCACCCAAAATCTAA  500

seq1  TGGGGTCTAGTTTCATAATCCTGAGAAAAAAAATCATTGCTCATCATGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTCTAGTTTCATAATCCTGAGAAAAAAAATCATTGCTCATCATGCT  550

seq1  GTCCTCTCTGATCCTGGAAGGACAGGATGTACGTACAACAGGAACTGGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCTCTGATCCTGGAAGGACAGGATGTACGTACAACAGGAACTGGAC  600

seq1  CACTGAACATCACCTCCATAGGACAGGAATTATTTTAGAGATTCATCATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAACATCACCTCCATAGGACAGGAATTATTTTAGAGATTCATCATT  650

seq1  CACATAAAACCTAAGTAAATGTAAACACTAGAAATAGCACTAAATATTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAAAACCTAAGTAAATGTAAACACTAGAAATAGCACTAAATATTGG  700

seq1  TGGTAAAAGAAACTAAAGATTTAGGGGAAACTCTTACAAATTAATAATGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAAAGAAACTAAAGATTTAGGGGAAACTCTTACAAATTAATAATGC  750

seq1  AATATGAAGCCAATACTCACTAACTACTGTAGATTATAGAAATATAGTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGAAGCCAATACTCACTAACTACTGTAGATTATAGAAATATAGTAG  800

seq1  CACCA-TTTTCATATTTTCAAGGAATTTTTATAAAATAAA-TTTTAGGGT  848
      ||||| |||||||||||||||||||||||||||||||||| |||||||||
seq2  CACCATTTTTCATATTTTCAAGGAATTTTTATAAAATAAATTTTTAGGGT  850

seq1  ATCAAAATAAGC-TTACATGGTAGTC-TTGACAGGAC-TTGTCTTCTGTG  895
      |||||||||||| ||||||||||||| |||||||||| ||||||||||||
seq2  ATCAAAATAAGCTTTACATGGTAGTCTTTGACAGGACTTTGTCTTCTGTG  900

seq1  G-AAGGTATCATGCAGAAATCTAAAAGAACC-TTTGAGAAAGAAAACCCA  943
      | ||||||||||||||||||||||||||||| ||||||||||||||||  
seq2  GAAAGGTATCATGCAGAAATCTAAAAGAACCTTTTGAGAAAGAAAACCAG  950

seq1  GCTGAATATT--GGGGCAGCAGAC-TGTA-TATGAG-AAAGGAGTTTATT  988
       |||||||||  |||||||||||| |||| |||||| |||||||||||||
seq2  CCTGAATATTTGGGGGCAGCAGACTTGTATTATGAGAAAAGGAGTTTATT  1000

seq1  TCACATTT-AAAATAATATACAAGCATTCCCCTGC-TTTCCTTTGC-TTC  1035
      |||||||| |||||||||||||||||||||||||| |||||||||| |||
seq2  TCACATTTAAAAATAATATACAAGCATTCCCCTGCTTTTCCTTTGCTTTC  1050

seq1  ATGATCCTTCTCCAGGAATA-ACAAGGAATTGGGCATTTTC-TTCTAACT  1083
      ||||| ||||| |||||||| | | |||||||||||||||| |||| |||
seq2  ATGATTCTTCT-CAGGAATACAAAGGGAATTGGGCATTTTCTTTCTTACT  1099

seq1  GCTACCCTAG  1093
      ||||||||||
seq2  GCTACCCTAG  1109